Wall clock time and date at job start Tue Mar 31 2020 10:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 6 6 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 7 7 C 1.34776 * 120.00219 * 154.99866 * 6 3 2 8 8 O 1.21274 * 120.00173 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99786 * 180.02562 * 7 6 3 10 10 H 1.09004 * 108.70227 * 61.74416 * 9 7 6 11 11 C 1.54557 * 108.75422 * 303.63844 * 9 7 6 12 12 S 1.84213 * 101.32590 * 215.93499 * 11 9 7 13 13 C 1.84076 * 93.90893 * 32.25838 * 12 11 9 14 14 N 1.45503 * 108.75116 * 179.97438 * 9 7 6 15 15 C 1.34778 * 122.43132 * 299.91085 * 14 9 7 16 16 O 1.21286 * 119.99543 * 0.02562 * 15 14 9 17 17 C 1.50700 * 120.00095 * 180.02562 * 15 14 9 18 18 C 1.52998 * 109.46804 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.46655 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99863 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99934 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47181 * 90.00058 * 23 21 19 25 25 H 1.48501 * 109.46770 * 209.99743 * 23 21 19 26 26 H 1.48496 * 109.47454 * 329.99929 * 23 21 19 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.08996 * 109.47654 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47476 * 300.00087 * 5 3 2 34 34 H 1.09008 * 109.46970 * 60.00049 * 5 3 2 35 35 H 0.97006 * 119.99491 * 334.99935 * 6 3 2 36 36 H 1.09002 * 111.05621 * 333.95076 * 11 9 7 37 37 H 1.09001 * 111.04795 * 97.92462 * 11 9 7 38 38 H 1.09000 * 110.77409 * 208.27382 * 13 12 11 39 39 H 1.08999 * 110.93313 * 84.92577 * 13 12 11 40 40 H 1.08993 * 109.46895 * 300.00497 * 17 15 14 41 41 H 1.08998 * 109.46860 * 60.00468 * 17 15 14 42 42 H 1.09006 * 109.47461 * 299.99583 * 18 17 15 43 43 H 1.08998 * 109.47211 * 60.00461 * 18 17 15 44 44 H 0.97001 * 120.00239 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7318 4.1028 -0.3061 9 6 1.1262 4.1122 -2.5871 10 1 0.1359 3.7584 -2.8742 11 6 2.1323 3.7121 -3.6901 12 16 2.2400 5.2717 -4.6645 13 6 1.9754 6.3538 -3.1990 14 7 1.0627 5.5485 -2.3633 15 6 0.2316 6.1030 -1.4587 16 8 -0.4992 5.3986 -0.7948 17 6 0.2104 7.5983 -1.2721 18 6 -0.8117 7.9631 -0.1937 19 6 -0.8333 9.4585 -0.0076 20 1 -0.1829 10.0858 -0.5990 21 6 -1.6829 10.0257 0.9186 22 7 -1.7014 11.3306 1.0813 23 14 -2.8074 8.9406 1.9420 24 1 -2.1103 8.5451 3.1922 25 1 -4.0441 9.6897 2.2806 26 1 -3.1618 7.7246 1.1669 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.9281 2.4720 0.1253 33 1 3.8532 0.9571 1.0571 34 1 3.9994 0.9054 -0.7162 35 1 1.4870 1.5661 -2.0463 36 1 3.0998 3.4505 -3.2614 37 1 1.7421 2.8963 -4.2987 38 1 1.5046 7.2924 -3.4915 39 1 2.9143 6.5399 -2.6777 40 1 1.1990 7.9402 -0.9660 41 1 -0.0652 8.0777 -2.2114 42 1 -1.8005 7.6211 -0.4995 43 1 -0.5357 7.4837 0.7455 44 1 -2.2993 11.7297 1.7326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361776811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:12 Heat of formation + Delta-G solvation = -98.697612 kcal Electronic energy + Delta-G solvation = -24878.325358 eV Core-core repulsion = 21341.766785 eV Total energy + Delta-G solvation = -3536.558572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82003 -40.23463 -37.71709 -37.02171 -35.60965 -34.00429 -33.31946 -31.97441 -30.58029 -28.46814 -28.10223 -25.52198 -24.63311 -23.43515 -21.97198 -21.51782 -20.36559 -19.29172 -18.74136 -18.43871 -17.60313 -17.10323 -16.70090 -16.41013 -16.28554 -16.00983 -15.35948 -15.04230 -14.88622 -14.78627 -14.66007 -14.57060 -14.35875 -14.19826 -14.11822 -13.54302 -13.37323 -13.13097 -13.04477 -12.90899 -12.69760 -12.30872 -12.17412 -12.07780 -12.01111 -11.92243 -11.82243 -11.66177 -11.43931 -11.03242 -10.81078 -10.73482 -10.15098 -9.92099 -8.94753 -8.34348 -6.36929 0.50572 0.86212 1.29632 1.30956 1.40229 1.46412 1.52724 1.71852 2.21765 2.31997 3.01117 3.07946 3.54874 3.64131 3.75922 3.95559 4.02136 4.06147 4.15705 4.24957 4.28337 4.34906 4.39468 4.45888 4.47187 4.60595 4.71641 4.83093 4.87045 4.96283 5.06421 5.08386 5.15498 5.25307 5.29279 5.37917 5.38132 5.53774 5.56137 6.01196 6.21082 6.49802 6.68284 7.06593 7.25109 7.28234 8.81308 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.004087 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.827378 B = 6848.925570 C = 8537.272146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.137 3.863 4 H 0.045 0.955 5 C -0.155 4.155 6 N -0.705 5.705 7 C 0.503 3.497 8 O -0.563 6.563 9 C 0.111 3.889 10 H 0.116 0.884 11 C -0.052 4.052 12 S -0.255 6.255 13 C 0.148 3.852 14 N -0.607 5.607 15 C 0.536 3.464 16 O -0.561 6.561 17 C -0.111 4.111 18 C 0.010 3.990 19 C -0.528 4.528 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.941 5.941 23 Si 0.935 3.065 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.264 1.264 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.417 0.583 36 H 0.117 0.883 37 H 0.169 0.831 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.012 0.988 43 H 0.000 1.000 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.738 -27.184 -12.667 32.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.033 3.967 4 H 0.064 0.936 5 C -0.213 4.213 6 N -0.359 5.359 7 C 0.287 3.713 8 O -0.440 6.440 9 C 0.002 3.998 10 H 0.133 0.867 11 C -0.200 4.200 12 S -0.029 6.029 13 C -0.085 4.085 14 N -0.343 5.343 15 C 0.326 3.674 16 O -0.438 6.438 17 C -0.150 4.150 18 C -0.028 4.028 19 C -0.566 4.566 20 H 0.071 0.929 21 C -0.180 4.180 22 N -0.581 5.581 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.188 1.188 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.254 0.746 36 H 0.136 0.864 37 H 0.187 0.813 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.581 -26.688 -12.700 31.744 hybrid contribution -0.911 -0.027 1.844 2.057 sum 10.670 -26.716 -10.855 30.748 Atomic orbital electron populations 1.21797 0.96125 1.02217 1.01192 1.21782 0.95671 0.93274 1.04851 1.21042 0.95466 0.94114 0.86116 0.93616 1.22102 0.94377 1.01254 1.03602 1.45844 1.70150 1.05454 1.14496 1.21096 0.76579 0.83410 0.90250 1.90754 1.50387 1.65260 1.37648 1.21364 1.02927 0.82112 0.93400 0.86682 1.24645 1.01689 0.98487 0.95184 1.88399 1.95501 1.04254 1.14728 1.24482 0.96905 0.97328 0.89743 1.48284 1.40653 1.05178 1.40210 1.20987 0.77867 0.91484 0.77080 1.90634 1.42547 1.64700 1.45924 1.21497 1.02321 0.89181 1.02023 1.19181 0.94909 0.94471 0.94282 1.21382 1.22351 0.91571 1.21305 0.92863 1.25737 0.98359 0.95984 0.97961 1.70007 1.40036 1.11362 1.36690 0.85884 0.79122 0.79493 0.79537 1.19829 1.19804 1.18810 0.90875 0.94952 0.92928 0.89376 0.88505 0.95017 0.90671 0.89934 0.74573 0.86428 0.81307 0.85228 0.87612 0.88551 0.87407 0.96972 0.98120 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.80 71.98 0.71 -1.43 16 2 C -0.12 -1.23 5.47 30.59 0.17 -1.06 16 3 C 0.14 2.39 2.57 44.99 0.12 2.50 16 4 H 0.05 1.22 7.58 -2.38 -0.02 1.20 16 5 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 6 N -0.71 -11.63 4.40 -442.53 -1.95 -13.58 16 7 C 0.50 13.14 6.42 87.66 0.56 13.70 16 8 O -0.56 -21.77 14.25 15.57 0.22 -21.55 16 9 C 0.11 2.40 2.87 44.96 0.13 2.53 16 10 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.05 -0.59 6.68 72.51 0.48 -0.11 16 12 S -0.26 -4.35 23.43 -56.49 -1.32 -5.67 16 13 C 0.15 3.21 7.21 127.55 0.92 4.13 16 14 N -0.61 -17.30 2.77 -807.35 -2.23 -19.54 16 15 C 0.54 21.03 6.74 87.66 0.59 21.63 16 16 O -0.56 -26.63 14.65 15.53 0.23 -26.40 16 17 C -0.11 -4.52 4.43 29.85 0.13 -4.39 16 18 C 0.01 0.50 3.33 29.85 0.10 0.60 16 19 C -0.53 -31.46 9.66 25.60 0.25 -31.21 16 20 H 0.05 3.30 7.99 -2.91 -0.02 3.28 16 21 C 0.02 1.07 5.47 84.66 0.46 1.54 16 22 N -0.94 -59.93 13.96 21.45 0.30 -59.63 16 23 Si 0.93 48.47 27.47 68.60 1.88 50.35 16 24 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.26 -13.67 6.54 99.48 0.65 -13.02 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.75 7.75 -2.39 -0.02 0.73 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.42 3.31 8.36 -92.70 -0.78 2.53 16 36 H 0.12 1.14 7.85 -2.39 -0.02 1.12 16 37 H 0.17 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.13 2.64 7.14 -2.39 -0.02 2.62 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.10 3.73 8.14 -2.39 -0.02 3.72 16 41 H 0.11 3.89 7.64 -2.39 -0.02 3.87 16 42 H 0.01 0.65 7.16 -2.38 -0.02 0.63 16 43 H 0.00 0.02 7.53 -2.39 -0.02 0.00 16 44 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -85.85 368.68 2.59 -83.26 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.16 Total: 5.98 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.30 Total: 6.78 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -3.88 Total: -92.74 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: 0.45 Total: -47.95 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.88 Total: 50.35 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -1.32 Total: -5.67 kcal Total: -85.85 2.59 -83.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361776811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.434 kcal (2) G-P(sol) polarization free energy of solvation -85.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds