Wall clock time and date at job start Tue Mar 31 2020 10:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 H 1.09004 * 109.47170 * 54.99901 * 3 2 1 5 5 C 1.50703 * 109.46992 * 175.00264 * 3 2 1 6 6 H 1.07995 * 119.99973 * 120.00527 * 5 3 2 7 7 C 1.37879 * 119.99728 * 299.99841 * 5 3 2 8 8 N 1.31513 * 119.99986 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00117 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.46916 * 89.99815 * 9 7 5 11 11 H 1.48497 * 109.47062 * 209.99872 * 9 7 5 12 12 H 1.48502 * 109.47121 * 330.00404 * 9 7 5 13 13 N 1.46505 * 109.47106 * 295.00157 * 3 2 1 14 14 C 1.34771 * 120.00090 * 84.99952 * 13 3 2 15 15 O 1.21555 * 120.00152 * 0.02562 * 14 13 3 16 16 C 1.47857 * 120.00017 * 179.97438 * 14 13 3 17 17 C 1.39613 * 120.50459 * 0.02562 * 16 14 13 18 18 N 1.31683 * 120.82612 * 179.97438 * 17 16 14 19 19 C 1.31819 * 122.01047 * 359.73308 * 18 17 16 20 20 C 1.39375 * 120.91806 * 0.53783 * 19 18 17 21 21 C 1.48498 * 120.46530 * 179.74777 * 20 19 18 22 22 C 1.40832 * 126.21690 * 179.69766 * 21 20 19 23 23 N 1.30674 * 108.09642 * 180.02562 * 22 21 20 24 24 N 1.40008 * 108.52793 * 359.97438 * 23 22 21 25 25 C 1.46495 * 125.90404 * 179.97438 * 24 23 22 26 26 C 1.34843 * 108.20471 * 0.02562 * 24 23 22 27 27 C 1.39465 * 119.06531 * 359.47857 * 20 19 18 28 28 H 1.08995 * 109.47548 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47130 * 300.00010 * 1 2 3 30 30 H 1.09008 * 109.47285 * 59.99758 * 1 2 3 31 31 H 1.08999 * 109.46730 * 240.00344 * 2 1 3 32 32 H 1.09000 * 109.47015 * 120.00127 * 2 1 3 33 33 H 0.96998 * 120.00019 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99729 * 264.99985 * 13 3 2 35 35 H 1.08000 * 119.58700 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.54225 * 180.25968 * 19 18 17 37 37 H 1.07997 * 125.95672 * 0.02562 * 22 21 20 38 38 H 1.09004 * 109.47121 * 90.02489 * 25 24 23 39 39 H 1.08998 * 109.47704 * 210.02783 * 25 24 23 40 40 H 1.09007 * 109.46765 * 330.03254 * 25 24 23 41 41 H 1.07993 * 126.19574 * 180.02562 * 26 24 23 42 42 H 1.08007 * 120.90882 * 180.27838 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1088 2.5700 10 1 2.8755 -1.3273 2.2632 11 1 3.7937 0.2347 3.8751 12 1 1.7876 0.8072 2.6386 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3410 2.6326 -0.4320 16 6 0.0441 3.3259 -2.6302 17 6 0.9275 3.3691 -3.7105 18 7 0.5856 3.9561 -4.8386 19 6 -0.5943 4.5203 -5.0031 20 6 -1.5343 4.5277 -3.9741 21 6 -2.8585 5.1711 -4.1685 22 6 -3.8957 5.2439 -3.2187 23 7 -4.8978 5.8843 -3.7602 24 7 -4.5427 6.2433 -5.0661 25 6 -5.3856 6.9745 -6.0153 26 6 -3.2913 5.7987 -5.2998 27 6 -1.2158 3.9176 -2.7611 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8770 0.4819 2.1128 34 1 2.2719 2.1232 -1.9978 35 1 1.9030 2.9145 -3.6201 36 1 -0.8344 4.9871 -5.9470 37 1 -3.8679 4.8407 -2.2172 38 1 -5.2144 8.0452 -5.9033 39 1 -5.1357 6.6710 -7.0319 40 1 -6.4340 6.7515 -5.8169 41 1 -2.7327 5.9185 -6.2162 42 1 -1.9234 3.9020 -1.9452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370380402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:00 Heat of formation + Delta-G solvation = 57.109031 kcal Electronic energy + Delta-G solvation = -25052.088922 eV Core-core repulsion = 21419.135433 eV Total energy + Delta-G solvation = -3632.953489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.31620 -41.43620 -40.06652 -37.13630 -34.96168 -34.42741 -33.76223 -33.36985 -32.49474 -30.22369 -29.34827 -27.57617 -25.76293 -24.67967 -24.38489 -22.79519 -21.78817 -21.60370 -21.06621 -19.50568 -18.49334 -17.76932 -17.58945 -17.51500 -16.87106 -16.42760 -16.26462 -16.14641 -15.53590 -15.25925 -15.10125 -14.78741 -14.64459 -14.24356 -14.04181 -13.85348 -13.73499 -13.65408 -13.55483 -13.46178 -13.00509 -12.90209 -12.75379 -12.39910 -11.87758 -11.84828 -11.41757 -11.28991 -11.23421 -11.08790 -10.84854 -10.57279 -10.45081 -10.39950 -9.80217 -8.90728 -8.36651 -6.42254 -0.37044 0.03280 0.93547 1.28368 1.36663 1.46312 1.61116 1.68561 2.10168 2.27192 2.33586 2.97191 3.00877 3.31659 3.49218 3.71250 3.87008 3.89531 3.92622 4.06350 4.21765 4.24736 4.32727 4.33410 4.46475 4.47588 4.59767 4.72290 4.75595 4.79605 4.85538 5.01274 5.06259 5.12819 5.22151 5.25115 5.39890 5.46506 5.52461 5.59421 5.63062 6.04204 6.14344 6.59299 6.61731 6.80511 6.88295 7.19011 7.37692 8.78348 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.002760 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.255786 B =10141.973317 C =10764.004063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.026 0.974 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.030 3.970 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.552 3.448 15 O -0.574 6.574 16 C -0.180 4.180 17 C 0.118 3.882 18 N -0.489 5.489 19 C 0.120 3.880 20 C -0.041 4.041 21 C -0.223 4.223 22 C 0.055 3.945 23 N -0.331 5.331 24 N -0.372 5.372 25 C 0.089 3.911 26 C 0.095 3.905 27 C -0.033 4.033 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.405 0.595 35 H 0.168 0.832 36 H 0.198 0.802 37 H 0.188 0.812 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.225 0.775 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.797 10.136 -19.166 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.043 0.957 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.339 3.661 15 O -0.455 6.455 16 C -0.186 4.186 17 C -0.039 4.039 18 N -0.197 5.197 19 C -0.038 4.038 20 C -0.044 4.044 21 C -0.235 4.235 22 C -0.131 4.131 23 N -0.152 5.152 24 N -0.152 5.152 25 C -0.050 4.050 26 C -0.054 4.054 27 C -0.060 4.060 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.242 0.758 35 H 0.185 0.815 36 H 0.214 0.786 37 H 0.205 0.795 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.241 0.759 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.889 10.612 -19.024 30.181 hybrid contribution 0.661 -0.804 1.585 1.897 sum -20.228 9.809 -17.439 28.451 Atomic orbital electron populations 1.21767 0.95236 1.00605 1.01567 1.22214 0.95827 0.98361 1.01212 1.18846 0.93388 0.89729 0.83529 0.95666 1.21270 0.90198 1.38617 1.07055 0.92353 1.25533 0.95729 0.95889 0.99815 1.69972 1.10242 1.46070 1.30845 0.86057 0.79376 0.80011 0.78330 1.18492 1.22174 1.18369 1.45939 1.15319 1.55591 1.17283 1.18413 0.81918 0.78298 0.87454 1.90719 1.52312 1.61224 1.41273 1.20850 0.97595 1.04641 0.95467 1.23098 0.99112 0.94291 0.87432 1.67708 1.19135 1.09272 1.23560 1.23505 0.87196 0.93962 0.99166 1.19020 0.93757 0.97885 0.93776 1.18690 0.95420 1.13092 0.96330 1.24213 0.90742 0.97404 1.00764 1.77262 1.24347 1.20643 0.92927 1.48847 1.12501 1.43107 1.10762 1.22315 0.95169 0.96599 0.90926 1.23176 0.86543 0.95175 1.00462 1.21706 0.94521 0.92167 0.97567 0.92238 0.94275 0.92923 0.91157 0.93640 0.92088 0.75820 0.81501 0.78578 0.79512 0.89253 0.85870 0.89231 0.75852 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.51 71.98 0.61 -4.59 16 2 C -0.14 -5.92 5.11 30.60 0.16 -5.77 16 3 C 0.25 11.75 1.83 44.25 0.08 11.83 16 4 H 0.03 1.33 6.63 -2.39 -0.02 1.32 16 5 C -0.53 -28.93 9.31 25.60 0.24 -28.69 16 6 H 0.06 3.36 7.98 -2.91 -0.02 3.33 16 7 C 0.03 1.70 5.45 84.66 0.46 2.16 16 8 N -0.93 -55.89 13.96 21.45 0.30 -55.59 16 9 Si 0.93 44.74 24.41 68.60 1.67 46.42 16 10 H -0.26 -11.66 6.83 99.48 0.68 -10.98 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 13 N -0.69 -27.18 4.98 -448.95 -2.23 -29.41 16 14 C 0.55 20.74 6.35 86.79 0.55 21.29 16 15 O -0.57 -24.87 13.55 -3.89 -0.05 -24.92 16 16 C -0.18 -5.39 5.89 -20.02 -0.12 -5.51 16 17 C 0.12 3.12 10.71 85.05 0.91 4.03 16 18 N -0.49 -11.57 10.33 -193.95 -2.00 -13.57 16 19 C 0.12 2.17 10.73 84.97 0.91 3.08 16 20 C -0.04 -0.85 5.89 -19.97 -0.12 -0.97 16 21 C -0.22 -4.02 6.05 -20.33 -0.12 -4.14 16 22 C 0.05 1.15 11.45 85.50 0.98 2.12 16 23 N -0.33 -7.03 12.54 -56.47 -0.71 -7.74 16 24 N -0.37 -5.08 4.00 -368.72 -1.48 -6.55 16 25 C 0.09 0.37 11.46 127.77 1.46 1.83 16 26 C 0.10 1.08 10.89 83.81 0.91 2.00 16 27 C -0.03 -0.87 9.23 22.95 0.21 -0.66 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 30 H 0.05 2.01 5.65 -2.38 -0.01 2.00 16 31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.05 2.04 3.21 -2.39 -0.01 2.03 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.41 13.98 6.60 -92.70 -0.61 13.36 16 35 H 0.17 4.00 6.41 -2.91 -0.02 3.99 16 36 H 0.20 1.71 7.02 -2.91 -0.02 1.69 16 37 H 0.19 3.60 7.41 -2.91 -0.02 3.57 16 38 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.23 0.30 7.30 -2.91 -0.02 0.27 16 42 H 0.14 3.77 6.84 -2.91 -0.02 3.75 16 Total: -1.00 -75.88 344.99 3.01 -72.88 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.38 Total: 20.48 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 7.13 Total: -1.99 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -6.12 Total: -112.86 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.42 kcal Total: -75.88 3.01 -72.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370380402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.986 kcal (2) G-P(sol) polarization free energy of solvation -75.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds