Wall clock time and date at job start Tue Mar 31 2020 10:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46701 * 2 1 4 4 H 1.09000 * 109.47391 * 305.69077 * 3 2 1 5 5 C 1.50703 * 109.46762 * 185.68980 * 3 2 1 6 6 H 1.07993 * 120.00509 * 275.00632 * 5 3 2 7 7 C 1.37889 * 119.99837 * 95.00658 * 5 3 2 8 8 N 1.31513 * 119.99816 * 184.83132 * 7 5 3 9 9 Si 1.86801 * 119.99777 * 4.82671 * 7 5 3 10 10 H 1.48508 * 109.46885 * 84.86475 * 9 7 5 11 11 H 1.48497 * 109.46904 * 204.85876 * 9 7 5 12 12 H 1.48494 * 109.47258 * 324.86646 * 9 7 5 13 13 N 1.46496 * 109.47229 * 65.69432 * 3 2 1 14 14 C 1.34776 * 120.00190 * 274.99574 * 13 3 2 15 15 O 1.21555 * 119.99725 * 359.97438 * 14 13 3 16 16 C 1.47854 * 120.00445 * 179.97438 * 14 13 3 17 17 C 1.39617 * 120.50252 * 359.97438 * 16 14 13 18 18 N 1.31685 * 120.82373 * 179.97438 * 17 16 14 19 19 C 1.31821 * 122.01121 * 359.74497 * 18 17 16 20 20 C 1.39365 * 120.91728 * 0.55151 * 19 18 17 21 21 C 1.48496 * 120.46464 * 179.71937 * 20 19 18 22 22 C 1.40840 * 126.22129 * 179.74273 * 21 20 19 23 23 N 1.30671 * 108.10166 * 179.97438 * 22 21 20 24 24 N 1.40013 * 108.52258 * 0.02562 * 23 22 21 25 25 C 1.46498 * 125.89723 * 179.97438 * 24 23 22 26 26 C 1.34833 * 108.20888 * 359.97438 * 24 23 22 27 27 C 1.39476 * 119.06932 * 359.44187 * 20 19 18 28 28 H 1.09002 * 109.47592 * 60.00039 * 1 2 3 29 29 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47111 * 299.99861 * 1 2 3 31 31 H 1.08997 * 109.47111 * 240.00139 * 2 1 3 32 32 H 1.08992 * 109.47082 * 119.99935 * 2 1 3 33 33 H 0.97000 * 119.99475 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00045 * 94.99597 * 13 3 2 35 35 H 1.08004 * 119.58464 * 0.02599 * 17 16 14 36 36 H 1.07999 * 119.54422 * 180.28561 * 19 18 17 37 37 H 1.08005 * 125.94763 * 359.96397 * 22 21 20 38 38 H 1.09002 * 109.47345 * 90.02680 * 25 24 23 39 39 H 1.09002 * 109.46930 * 210.02656 * 25 24 23 40 40 H 1.08996 * 109.47060 * 330.02144 * 25 24 23 41 41 H 1.08003 * 126.20096 * 180.02562 * 26 24 23 42 42 H 1.07996 * 120.90521 * 180.25926 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 3.5403 1.4449 -0.1409 6 1 4.1650 1.3334 0.7330 7 6 4.1157 1.5894 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3741 -2.9864 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6667 2.0924 1.2587 14 6 0.4508 2.6588 1.3901 15 8 -0.3360 2.6308 0.4639 16 6 0.0738 3.3143 2.6607 17 6 0.9690 3.3521 3.7314 18 7 0.6400 3.9346 4.8657 19 6 -0.5339 4.5077 5.0421 20 6 -1.4892 4.5104 4.0274 21 6 -2.8107 5.1536 4.2393 22 6 -3.8583 5.2316 3.3011 23 7 -4.8540 5.8701 3.8565 24 7 -4.4844 6.2228 5.1601 25 6 -5.3161 6.9510 6.1214 26 6 -3.2309 5.7764 5.3780 27 6 -1.1844 3.9055 2.8082 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8252 1.5985 -2.3973 34 1 2.2946 2.1151 1.9977 35 1 1.9437 2.8987 3.6278 36 1 -0.7601 4.9781 5.9876 37 1 -3.8415 4.8331 2.2974 38 1 -5.8996 6.2414 6.7080 39 1 -4.6779 7.5336 6.7858 40 1 -5.9895 7.6200 5.5857 41 1 -2.6624 5.8909 6.2892 42 1 -1.9009 3.8940 2.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370380408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:03 Heat of formation + Delta-G solvation = 49.190122 kcal Electronic energy + Delta-G solvation = -25052.568387 eV Core-core repulsion = 21419.271508 eV Total energy + Delta-G solvation = -3633.296879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.31690 -41.41285 -40.03156 -36.99383 -34.95099 -34.41211 -33.74278 -33.36954 -32.42682 -30.22378 -29.34512 -27.57725 -25.73157 -24.68973 -24.43815 -22.61822 -21.71209 -21.49185 -21.09427 -19.52488 -18.59481 -17.73089 -17.59435 -17.47653 -16.73450 -16.42596 -16.22304 -16.10786 -15.54264 -15.24681 -14.92334 -14.77102 -14.63078 -14.23894 -13.92575 -13.87463 -13.76546 -13.66750 -13.56373 -13.45791 -12.95198 -12.90867 -12.56707 -12.36325 -11.88887 -11.86140 -11.69775 -11.28932 -11.20212 -11.10178 -10.82315 -10.57012 -10.45287 -10.39396 -9.73403 -8.90730 -8.37922 -6.43594 -0.36269 0.03484 0.93193 1.29968 1.34743 1.45266 1.60798 1.69021 2.11635 2.27820 2.35697 2.99007 3.03379 3.33274 3.49285 3.72475 3.87728 3.89795 3.93627 4.07766 4.22239 4.32311 4.33265 4.42800 4.47375 4.53852 4.61534 4.72112 4.75334 4.79625 4.84676 5.06660 5.12964 5.21648 5.25582 5.29111 5.41704 5.46381 5.56397 5.60893 5.74570 6.03940 6.13345 6.61294 6.61629 6.83464 6.89371 7.21348 7.39275 8.76901 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023587 B = 0.002856 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.794491 B = 9801.433007 C =10232.492504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.241 3.759 4 H 0.032 0.968 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.035 3.965 8 N -0.928 5.928 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.253 1.253 13 N -0.695 5.695 14 C 0.549 3.451 15 O -0.577 6.577 16 C -0.181 4.181 17 C 0.118 3.882 18 N -0.489 5.489 19 C 0.119 3.881 20 C -0.041 4.041 21 C -0.223 4.223 22 C 0.055 3.945 23 N -0.331 5.331 24 N -0.372 5.372 25 C 0.089 3.911 26 C 0.095 3.905 27 C -0.034 4.034 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.270 0.730 34 H 0.404 0.596 35 H 0.168 0.832 36 H 0.198 0.802 37 H 0.188 0.812 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.225 0.775 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.143 9.773 19.246 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.050 0.950 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.166 4.166 8 N -0.567 5.567 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.177 1.177 13 N -0.344 5.344 14 C 0.336 3.664 15 O -0.459 6.459 16 C -0.186 4.186 17 C -0.040 4.040 18 N -0.197 5.197 19 C -0.039 4.039 20 C -0.045 4.045 21 C -0.235 4.235 22 C -0.131 4.131 23 N -0.152 5.152 24 N -0.152 5.152 25 C -0.050 4.050 26 C -0.054 4.054 27 C -0.061 4.061 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.185 0.815 36 H 0.214 0.786 37 H 0.204 0.796 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.242 0.758 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.230 10.287 19.090 29.656 hybrid contribution 0.566 -0.314 -1.648 1.770 sum -19.663 9.973 17.442 28.113 Atomic orbital electron populations 1.21778 0.95893 1.00344 1.01146 1.21989 0.94943 0.97833 1.01450 1.18970 0.93416 0.90377 0.83458 0.94971 1.21200 0.90157 1.50405 0.94656 0.92317 1.25579 0.95722 0.93961 1.01337 1.69975 1.11196 1.50262 1.25256 0.86107 0.80109 0.79245 0.79753 1.20159 1.20402 1.17708 1.46312 1.14902 1.55570 1.17616 1.18463 0.82143 0.78401 0.87394 1.90710 1.51687 1.61362 1.42128 1.20895 0.97529 1.04593 0.95583 1.23101 0.99028 0.94385 0.87437 1.67706 1.19671 1.09217 1.23075 1.23497 0.87159 0.93973 0.99263 1.19022 0.93741 0.97930 0.93773 1.18695 0.95361 1.13166 0.96306 1.24210 0.90721 0.97457 1.00759 1.77262 1.24273 1.20827 0.92802 1.48846 1.12328 1.43247 1.10793 1.22315 0.95909 0.96769 0.90011 1.23175 0.86619 0.95251 1.00306 1.21708 0.94685 0.92267 0.97413 0.94638 0.92388 0.93372 0.92865 0.91828 0.92055 0.75998 0.81477 0.78583 0.79555 0.89173 0.85906 0.89262 0.75838 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.53 71.98 0.61 -4.56 16 2 C -0.12 -5.19 5.59 30.59 0.17 -5.02 16 3 C 0.24 11.24 1.89 44.25 0.08 11.32 16 4 H 0.03 1.65 4.73 -2.39 -0.01 1.64 16 5 C -0.53 -28.14 9.05 25.60 0.23 -27.91 16 6 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 7 C 0.03 1.94 5.47 84.66 0.46 2.40 16 8 N -0.93 -55.16 13.96 21.45 0.30 -54.86 16 9 Si 0.92 44.58 26.99 68.60 1.85 46.44 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.25 -11.90 6.82 99.48 0.68 -11.22 16 13 N -0.70 -27.42 4.98 -448.97 -2.24 -29.66 16 14 C 0.55 20.90 6.38 86.79 0.55 21.45 16 15 O -0.58 -25.29 13.56 -3.89 -0.05 -25.34 16 16 C -0.18 -5.51 5.89 -20.02 -0.12 -5.63 16 17 C 0.12 3.16 10.71 85.05 0.91 4.08 16 18 N -0.49 -11.75 10.33 -193.95 -2.00 -13.76 16 19 C 0.12 2.21 10.73 84.97 0.91 3.12 16 20 C -0.04 -0.87 5.89 -19.97 -0.12 -0.99 16 21 C -0.22 -4.11 6.05 -20.33 -0.12 -4.23 16 22 C 0.05 1.16 11.45 85.50 0.98 2.14 16 23 N -0.33 -7.12 12.54 -56.46 -0.71 -7.83 16 24 N -0.37 -5.17 4.00 -368.72 -1.48 -6.65 16 25 C 0.09 0.38 11.46 127.77 1.46 1.85 16 26 C 0.10 1.11 10.89 83.81 0.91 2.03 16 27 C -0.03 -0.92 9.23 22.95 0.21 -0.71 16 28 H 0.03 1.46 7.88 -2.39 -0.02 1.44 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.86 5.63 -2.39 -0.01 1.84 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.40 14.00 6.65 -92.71 -0.62 13.39 16 35 H 0.17 4.07 6.41 -2.91 -0.02 4.06 16 36 H 0.20 1.78 7.02 -2.91 -0.02 1.76 16 37 H 0.19 3.67 7.41 -2.91 -0.02 3.65 16 38 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.23 0.36 7.30 -2.91 -0.02 0.33 16 42 H 0.14 3.83 6.84 -2.91 -0.02 3.81 16 Total: -1.00 -75.16 351.67 3.24 -71.92 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.42 Total: 20.39 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 7.15 Total: -0.65 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -6.13 Total: -112.76 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.85 Total: 46.44 kcal Total: -75.16 3.24 -71.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370380408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.112 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds