Wall clock time and date at job start Tue Mar 31 2020 10:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 H 1.08994 * 109.47012 * 55.00480 * 3 2 1 5 5 C 1.50706 * 109.46585 * 175.00226 * 3 2 1 6 6 H 1.08004 * 119.99675 * 120.00597 * 5 3 2 7 7 C 1.37875 * 120.00160 * 299.72168 * 5 3 2 8 8 N 1.31514 * 119.99991 * 180.28165 * 7 5 3 9 9 Si 1.86808 * 119.99930 * 0.27694 * 7 5 3 10 10 H 1.48501 * 109.46926 * 90.00075 * 9 7 5 11 11 H 1.48496 * 109.47116 * 210.00272 * 9 7 5 12 12 H 1.48500 * 109.47111 * 330.00161 * 9 7 5 13 13 N 1.46495 * 109.47221 * 294.99842 * 3 2 1 14 14 C 1.34777 * 119.99964 * 85.00165 * 13 3 2 15 15 O 1.21584 * 119.99674 * 0.02562 * 14 13 3 16 16 C 1.47611 * 120.00378 * 179.97438 * 14 13 3 17 17 C 1.39643 * 120.18526 * 353.66061 * 16 14 13 18 18 C 1.37844 * 119.91221 * 179.78518 * 17 16 14 19 19 C 1.50704 * 119.84847 * 180.24858 * 18 17 16 20 20 C 1.38514 * 120.30493 * 0.49069 * 18 17 16 21 21 C 1.38098 * 120.38207 * 359.74093 * 20 18 17 22 22 C 1.38719 * 120.07813 * 0.02562 * 21 20 18 23 23 N 1.39798 * 120.15160 * 179.97438 * 22 21 20 24 24 C 1.36369 * 127.11419 * 121.95652 * 23 22 21 25 25 N 1.30507 * 107.19040 * 179.83674 * 24 23 22 26 26 N 1.28533 * 109.92585 * 0.44647 * 25 24 23 27 27 C 1.30502 * 109.92173 * 359.71364 * 26 25 24 28 28 H 1.09006 * 109.46943 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46536 * 299.99740 * 1 2 3 30 30 H 1.08994 * 109.47591 * 59.99990 * 1 2 3 31 31 H 1.08995 * 109.46929 * 239.99751 * 2 1 3 32 32 H 1.09000 * 109.47153 * 120.00034 * 2 1 3 33 33 H 0.97003 * 119.99539 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00433 * 265.00606 * 13 3 2 35 35 H 1.08004 * 120.04181 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.47622 * 270.23962 * 19 18 17 37 37 H 1.09004 * 109.46810 * 30.24058 * 19 18 17 38 38 H 1.09005 * 109.46956 * 150.23511 * 19 18 17 39 39 H 1.07992 * 119.80946 * 179.71761 * 20 18 17 40 40 H 1.07997 * 119.96333 * 180.02562 * 21 20 18 41 41 H 1.08000 * 126.40536 * 0.02562 * 24 23 22 42 42 H 1.08003 * 126.40223 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1431 0.8835 1.2306 8 7 5.4536 0.8899 1.3412 9 14 3.0962 0.1145 2.5731 10 1 2.8804 -1.3231 2.2702 11 1 3.7907 0.2464 3.8790 12 1 1.7852 0.8091 2.6374 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4317 16 6 0.0447 3.3248 -2.6280 17 6 0.9765 3.4815 -3.6562 18 6 0.6047 4.0952 -4.8332 19 6 1.6099 4.2585 -5.9441 20 6 -0.6873 4.5668 -4.9977 21 6 -1.6174 4.4227 -3.9872 22 6 -1.2617 3.8034 -2.7980 23 7 -2.2019 3.6572 -1.7738 24 6 -2.6131 2.4932 -1.1943 25 7 -3.4939 2.8060 -0.2835 26 7 -3.6672 4.0794 -0.2607 27 6 -2.9020 4.6483 -1.1517 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8764 0.4957 2.1201 34 1 2.2718 2.1231 -1.9978 35 1 1.9861 3.1189 -3.5309 36 1 2.1344 5.2063 -5.8231 37 1 2.3276 3.4389 -5.9080 38 1 1.0947 4.2483 -6.9047 39 1 -0.9687 5.0504 -5.9214 40 1 -2.6229 4.7926 -4.1229 41 1 -2.2714 1.4988 -1.4408 42 1 -2.8353 5.7065 -1.3575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433377367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:55 Heat of formation + Delta-G solvation = 84.676679 kcal Electronic energy + Delta-G solvation = -26612.571897 eV Core-core repulsion = 22980.813830 eV Total energy + Delta-G solvation = -3631.758067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.92850 -40.31463 -38.69527 -35.77773 -34.98314 -32.86301 -32.09325 -31.71782 -30.91108 -30.25257 -27.62423 -27.02768 -24.45152 -23.33799 -22.73297 -22.11178 -21.55718 -20.47213 -19.81102 -18.73084 -17.57156 -16.55056 -16.22055 -15.69198 -15.54399 -15.25262 -14.85963 -14.79905 -14.41630 -14.37638 -14.25749 -13.95530 -13.47653 -13.09212 -12.72628 -12.60735 -12.33280 -12.27272 -11.98182 -11.89917 -11.79641 -11.29221 -11.17695 -10.99903 -10.71527 -10.60521 -10.28309 -10.01403 -9.73549 -9.44714 -9.39004 -9.33311 -8.98613 -8.83225 -8.81730 -8.23731 -6.29262 -4.32940 0.41134 0.75432 2.05876 2.57496 2.83061 3.18726 3.20969 3.31912 3.36902 3.57221 3.62042 4.25047 4.33895 4.40364 4.52304 4.65601 4.75975 4.80413 5.00542 5.04696 5.19021 5.26188 5.29292 5.46948 5.52062 5.63342 5.67186 5.74182 5.86080 5.94241 6.00935 6.07034 6.10853 6.32123 6.34782 6.54481 6.62233 6.72077 6.83851 7.08263 7.16095 7.17505 7.38651 7.97380 8.34809 8.59803 8.71534 8.94572 9.30794 10.82488 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005136 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.856447 B = 5450.705488 C = 7146.240651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.051 0.949 5 C -0.539 4.539 6 H 0.080 0.920 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.686 5.686 14 C 0.536 3.464 15 O -0.530 6.530 16 C -0.111 4.111 17 C -0.075 4.075 18 C -0.080 4.080 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.113 4.113 22 C 0.155 3.845 23 N -0.431 5.431 24 C 0.226 3.774 25 N -0.308 5.308 26 N -0.296 5.296 27 C 0.153 3.847 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.268 0.732 34 H 0.394 0.606 35 H 0.141 0.859 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.206 0.794 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 6.581 -17.233 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.069 0.931 5 C -0.577 4.577 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.711 3.289 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.333 5.333 14 C 0.321 3.679 15 O -0.409 6.409 16 C -0.115 4.115 17 C -0.094 4.094 18 C -0.080 4.080 19 C -0.175 4.175 20 C -0.108 4.108 21 C -0.132 4.132 22 C 0.061 3.939 23 N -0.120 5.120 24 C -0.060 4.060 25 N -0.145 5.145 26 N -0.133 5.133 27 C -0.133 4.133 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.223 0.777 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -11.225 6.308 -15.229 19.943 hybrid contribution 1.168 -0.301 -0.597 1.346 sum -10.057 6.007 -15.826 19.690 Atomic orbital electron populations 1.21885 0.96884 0.99262 1.01984 1.22280 0.94384 0.99703 1.01288 1.19223 0.95840 0.88587 0.82314 0.93090 1.20989 0.88385 1.40388 1.07895 0.90218 1.24809 0.94870 0.95011 0.97601 1.69858 1.08708 1.44309 1.29727 0.86923 0.81029 0.80000 0.80965 1.20119 1.22034 1.18411 1.46149 1.14209 1.54784 1.18202 1.18041 0.83395 0.79812 0.86697 1.90821 1.50871 1.59690 1.39540 1.20306 0.92629 1.02315 0.96297 1.21290 0.99309 0.97221 0.91589 1.20020 0.95164 0.97196 0.95615 1.20865 0.97606 1.03214 0.95781 1.21076 0.92306 0.98649 0.98765 1.21066 1.00680 1.00187 0.91300 1.17460 0.87257 1.01322 0.87814 1.43802 1.31268 1.08138 1.28807 1.26336 0.94529 0.92206 0.92939 1.74137 1.17477 1.06162 1.16731 1.74075 1.20815 1.01017 1.17395 1.26534 0.94853 0.96636 0.95305 0.94672 0.92567 0.93533 0.92245 0.92552 0.92166 0.77136 0.84137 0.90483 0.90756 0.91103 0.84601 0.84574 0.77723 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.51 37.16 0.32 -2.42 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.06 16 3 C 0.24 5.49 1.83 -69.08 -0.13 5.36 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -13.97 9.31 -34.44 -0.32 -14.29 16 6 H 0.08 2.16 7.98 -52.48 -0.42 1.74 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 9 Si 0.88 21.49 24.41 -169.99 -4.15 17.34 16 10 H -0.27 -6.47 6.84 56.52 0.39 -6.08 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.36 6.52 56.52 0.37 -5.99 16 13 N -0.69 -12.50 4.97 -55.95 -0.28 -12.78 16 14 C 0.54 9.27 6.18 -12.44 -0.08 9.20 16 15 O -0.53 -10.76 9.78 5.29 0.05 -10.71 16 16 C -0.11 -1.47 5.88 -104.83 -0.62 -2.09 16 17 C -0.07 -0.78 9.16 -39.20 -0.36 -1.14 16 18 C -0.08 -0.64 5.87 -104.66 -0.61 -1.25 16 19 C -0.12 -0.66 10.00 36.01 0.36 -0.30 16 20 C -0.09 -0.64 9.68 -39.53 -0.38 -1.02 16 21 C -0.11 -0.98 9.82 -39.45 -0.39 -1.37 16 22 C 0.15 1.89 5.95 -83.32 -0.50 1.39 16 23 N -0.43 -6.17 2.10 -62.96 -0.13 -6.30 16 24 C 0.23 3.69 9.43 -89.15 -0.84 2.85 16 25 N -0.31 -5.77 12.19 29.86 0.36 -5.41 16 26 N -0.30 -5.27 12.19 29.86 0.36 -4.90 16 27 C 0.15 2.18 12.61 -89.15 -1.12 1.05 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.18 7.84 -51.92 -0.41 0.78 16 30 H 0.05 0.83 4.95 -51.93 -0.26 0.57 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.28 3.24 -51.93 -0.17 1.11 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.39 6.22 6.61 -40.82 -0.27 5.95 16 35 H 0.14 1.33 6.45 -52.48 -0.34 0.99 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 39 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.21 3.04 7.29 -52.49 -0.38 2.66 16 42 H 0.21 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -33.64 338.95 -7.95 -41.58 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.15 Total: 6.00 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -4.90 Total: -4.95 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 1.09 Total: -54.38 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.05 Total: -10.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.15 Total: 17.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.64 -7.95 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433377367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.260 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds