Wall clock time and date at job start Tue Mar 31 2020 10:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 H 1.08996 * 109.47394 * 304.90044 * 3 2 1 5 5 C 1.50702 * 109.47188 * 184.89901 * 3 2 1 6 6 H 1.07993 * 120.00096 * 245.45389 * 5 3 2 7 7 C 1.37887 * 119.99762 * 65.45462 * 5 3 2 8 8 N 1.31511 * 119.99739 * 9.47207 * 7 5 3 9 9 Si 1.86800 * 119.99772 * 189.47013 * 7 5 3 10 10 H 1.48491 * 109.47218 * 84.99453 * 9 7 5 11 11 H 1.48502 * 109.46778 * 204.99465 * 9 7 5 12 12 H 1.48500 * 109.47160 * 324.98915 * 9 7 5 13 13 N 1.46502 * 109.46906 * 64.90287 * 3 2 1 14 14 C 1.34773 * 119.99769 * 274.99967 * 13 3 2 15 15 O 1.21551 * 120.00395 * 0.02562 * 14 13 3 16 16 C 1.47851 * 119.99821 * 180.02562 * 14 13 3 17 17 C 1.39573 * 120.14188 * 180.02562 * 16 14 13 18 18 C 1.37964 * 119.85315 * 180.02562 * 17 16 14 19 19 C 1.38362 * 120.13864 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.85096 * 179.97438 * 19 18 17 21 21 N 1.46503 * 109.46693 * 89.99747 * 20 19 18 22 22 C 1.35314 * 125.86240 * 124.71955 * 21 20 19 23 23 C 1.35356 * 106.17401 * 179.90172 * 22 21 20 24 24 N 1.33775 * 106.49306 * 0.35192 * 23 22 21 25 25 N 1.28629 * 108.88834 * 359.77393 * 24 23 22 26 26 C 1.38359 * 120.29802 * 0.27111 * 19 18 17 27 27 C 1.37960 * 120.13787 * 359.45276 * 26 19 18 28 28 H 1.09004 * 109.46861 * 299.99972 * 1 2 3 29 29 H 1.08998 * 109.46909 * 59.99817 * 1 2 3 30 30 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46861 * 240.00028 * 2 1 3 32 32 H 1.09003 * 109.47137 * 120.00576 * 2 1 3 33 33 H 0.97001 * 120.00111 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99901 * 95.00134 * 13 3 2 35 35 H 1.08006 * 120.07809 * 359.97438 * 17 16 14 36 36 H 1.07996 * 119.92981 * 179.97438 * 18 17 16 37 37 H 1.09007 * 109.46866 * 330.00351 * 20 19 18 38 38 H 1.08999 * 109.47675 * 209.99846 * 20 19 18 39 39 H 1.07997 * 126.91842 * 0.02562 * 22 21 20 40 40 H 1.08001 * 126.75159 * 180.12228 * 23 22 21 41 41 H 1.07997 * 119.92998 * 179.70534 * 26 19 18 42 42 H 1.08010 * 120.06668 * 180.29806 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8090 0.6939 7 6 4.1413 0.9800 -1.2733 8 7 3.4097 0.7116 -2.3326 9 14 5.9920 0.7327 -1.3290 10 1 6.3290 -0.6067 -0.7836 11 1 6.4619 0.8275 -2.7345 12 1 6.6562 1.7809 -0.5133 13 7 1.6504 2.0981 1.2508 14 6 0.4330 2.6651 1.3637 15 8 -0.3420 2.6320 0.4278 16 6 0.0400 3.3273 2.6258 17 6 -1.2203 3.9149 2.7461 18 6 -1.5806 4.5317 3.9265 19 6 -0.6954 4.5689 4.9892 20 6 -1.0955 5.2449 6.2754 21 7 -1.7373 4.2696 7.1604 22 6 -1.3616 3.9819 8.4281 23 6 -2.2219 3.0353 8.8707 24 7 -3.0658 2.7879 7.8626 25 7 -2.7520 3.5353 6.8639 26 6 0.5577 3.9937 4.8745 27 6 0.9282 3.3688 3.7016 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8311 0.3847 -3.1429 34 1 2.2687 2.1242 1.9978 35 1 -1.9117 3.8876 1.9168 36 1 -2.5553 4.9871 4.0208 37 1 -1.7936 6.0536 6.0589 38 1 -0.2095 5.6506 6.7636 39 1 -0.5417 4.4207 8.9771 40 1 -2.2241 2.5686 9.8447 41 1 1.2457 4.0303 5.7061 42 1 1.9049 2.9159 3.6149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529036903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:18 Heat of formation + Delta-G solvation = 85.386275 kcal Electronic energy + Delta-G solvation = -25064.359097 eV Core-core repulsion = 21432.631801 eV Total energy + Delta-G solvation = -3631.727296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.44890 -39.99668 -38.40504 -35.34470 -34.98564 -32.61658 -31.80530 -31.26624 -31.15979 -30.62392 -27.76684 -26.73537 -23.65825 -23.05451 -22.89939 -22.48418 -21.61036 -20.36630 -19.42693 -18.14054 -17.80028 -16.94076 -16.10728 -15.78408 -15.39319 -15.08819 -15.01440 -14.69623 -14.60343 -14.38773 -14.08861 -13.69234 -13.20903 -13.02229 -12.76339 -12.68125 -12.09458 -11.97926 -11.80598 -11.50426 -11.38515 -11.20556 -11.10455 -11.04691 -10.81641 -10.40251 -10.36947 -10.24418 -9.73219 -9.62656 -9.15654 -9.14148 -9.09791 -8.99999 -8.51845 -7.90673 -6.18324 -4.24134 0.64869 1.26683 1.37820 2.16012 2.38513 3.21390 3.22488 3.29290 3.30168 3.90358 3.97082 4.07285 4.19373 4.29517 4.34409 4.63497 4.71374 4.79487 4.85808 4.97332 5.14835 5.19321 5.28340 5.40351 5.49996 5.65755 5.84303 5.90387 6.15370 6.23951 6.28203 6.33401 6.37387 6.37713 6.57848 6.72756 6.97518 7.13903 7.27905 7.35726 7.56710 7.66865 7.79328 8.02856 8.30799 8.58716 8.74008 9.03567 9.41604 10.89927 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.002701 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.890020 B =10363.473503 C =10721.452565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.540 6.540 16 C -0.101 4.101 17 C -0.068 4.068 18 C -0.090 4.090 19 C -0.114 4.114 20 C 0.159 3.841 21 N -0.287 5.287 22 C -0.054 4.054 23 C -0.054 4.054 24 N -0.275 5.275 25 N -0.074 5.074 26 C -0.104 4.104 27 C -0.093 4.093 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.190 0.810 40 H 0.188 0.812 41 H 0.126 0.874 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 9.779 20.758 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.076 0.924 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.323 3.677 15 O -0.419 6.419 16 C -0.104 4.104 17 C -0.087 4.087 18 C -0.108 4.108 19 C -0.115 4.115 20 C 0.039 3.961 21 N -0.081 5.081 22 C -0.204 4.204 23 C -0.211 4.211 24 N -0.141 5.141 25 N -0.054 5.054 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.207 0.793 40 H 0.205 0.795 41 H 0.144 0.856 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.071 9.319 18.753 22.103 hybrid contribution 2.338 0.140 1.172 2.619 sum -4.733 9.459 19.925 22.559 Atomic orbital electron populations 1.21852 0.97971 0.98313 1.01529 1.21858 0.93037 0.99743 1.01248 1.18852 0.94457 0.88974 0.81061 0.92401 1.21151 0.90453 1.44291 1.01863 0.92113 1.24885 0.98502 0.95083 0.94947 1.69980 1.35808 1.43544 1.02158 0.86527 0.84932 0.78730 0.77312 1.20388 1.21130 1.19913 1.46465 1.14290 1.55291 1.18621 1.18159 0.83129 0.79599 0.86815 1.90753 1.51531 1.59936 1.39719 1.20517 0.95282 0.99555 0.95061 1.21329 0.95366 0.94293 0.97680 1.20993 0.98865 0.98653 0.92300 1.19681 0.95388 1.02013 0.94398 1.21000 0.98791 0.88453 0.87876 1.47647 1.21413 1.28139 1.10868 1.23707 1.05252 1.04073 0.87408 1.23639 0.95668 1.00611 1.01230 1.75162 1.23109 1.17979 0.97819 1.78372 1.02499 1.03597 1.20925 1.20900 0.95632 0.97840 0.97897 1.21377 0.99500 0.97898 0.92435 0.94071 0.92878 0.95657 0.90120 0.94682 0.92478 0.77959 0.84193 0.85184 0.87268 0.86629 0.79338 0.79493 0.85648 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.12 -2.87 5.50 -26.73 -0.15 -3.01 16 3 C 0.27 6.65 2.11 -69.08 -0.15 6.51 16 4 H 0.06 1.68 7.52 -51.93 -0.39 1.29 16 5 C -0.54 -14.01 8.66 -34.44 -0.30 -14.31 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.62 12.16 55.43 0.67 -23.95 16 9 Si 0.90 20.31 29.55 -169.99 -5.02 15.29 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.31 4.97 -55.88 -0.28 -14.59 16 14 C 0.54 10.72 6.34 -12.33 -0.08 10.65 16 15 O -0.54 -12.55 13.48 5.32 0.07 -12.48 16 16 C -0.10 -1.57 5.87 -104.97 -0.62 -2.19 16 17 C -0.07 -0.95 9.60 -39.18 -0.38 -1.33 16 18 C -0.09 -0.99 9.68 -39.64 -0.38 -1.37 16 19 C -0.11 -1.07 5.25 -104.53 -0.55 -1.62 16 20 C 0.16 0.98 6.58 -5.19 -0.03 0.95 16 21 N -0.29 -2.58 3.43 -62.44 -0.21 -2.79 16 22 C -0.05 -0.37 11.57 -17.04 -0.20 -0.57 16 23 C -0.05 -0.48 12.06 -17.73 -0.21 -0.70 16 24 N -0.27 -3.60 12.41 30.24 0.38 -3.23 16 25 N -0.07 -0.95 12.92 60.35 0.78 -0.17 16 26 C -0.10 -1.03 9.68 -39.64 -0.38 -1.41 16 27 C -0.09 -1.17 9.54 -39.19 -0.37 -1.55 16 28 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 29 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 2.11 6.80 -51.93 -0.35 1.76 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.39 6.82 6.56 -40.82 -0.27 6.55 16 35 H 0.14 2.02 7.65 -52.48 -0.40 1.62 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.12 0.32 8.01 -51.93 -0.42 -0.10 16 39 H 0.19 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.19 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 1.50 6.41 -52.48 -0.34 1.16 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -33.95 355.41 -7.19 -41.14 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.36 Total: 6.40 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.57 Total: -10.98 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 1.34 Total: -44.73 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.95 -7.19 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.530 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds