Wall clock time and date at job start Tue Mar 31 2020 10:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46738 * 2 1 4 4 N 1.46506 * 109.47033 * 119.99582 * 2 1 3 5 5 C 1.46496 * 119.99918 * 304.64562 * 4 2 1 6 6 C 1.50696 * 109.47257 * 263.35987 * 5 4 2 7 7 H 1.08004 * 119.99844 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00228 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00004 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00010 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47175 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47252 * 120.00082 * 10 8 6 13 13 H 1.48501 * 109.47004 * 240.00096 * 10 8 6 14 14 C 1.34777 * 119.99622 * 124.64355 * 4 2 1 15 15 O 1.21557 * 120.00019 * 4.32959 * 14 4 2 16 16 C 1.47840 * 119.99624 * 184.32723 * 14 4 2 17 17 N 1.34570 * 126.02434 * 353.85403 * 16 14 4 18 18 C 1.30864 * 107.28867 * 180.02562 * 17 16 14 19 19 N 1.34887 * 107.59085 * 359.97438 * 18 17 16 20 20 C 1.40147 * 125.77271 * 180.02562 * 19 18 17 21 21 C 1.38847 * 120.06345 * 359.72159 * 20 19 18 22 22 C 1.38116 * 119.92882 * 179.72205 * 21 20 19 23 23 C 1.38284 * 120.06879 * 0.58262 * 22 21 20 24 24 C 1.38283 * 120.13283 * 359.68981 * 23 22 21 25 25 C 1.38111 * 120.07107 * 0.02562 * 24 23 22 26 26 N 1.28855 * 108.46088 * 0.02562 * 19 18 17 27 27 H 1.08994 * 109.47436 * 299.99912 * 1 2 3 28 28 H 1.08997 * 109.47154 * 60.00591 * 1 2 3 29 29 H 1.09007 * 109.46580 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47436 * 240.00088 * 2 1 3 31 31 H 1.09008 * 109.47115 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47630 * 300.00010 * 3 2 1 33 33 H 1.09005 * 109.47439 * 60.00235 * 3 2 1 34 34 H 1.08997 * 109.47490 * 23.36125 * 5 4 2 35 35 H 1.09005 * 109.47015 * 143.36314 * 5 4 2 36 36 H 0.96999 * 119.99699 * 180.02562 * 9 8 6 37 37 H 1.07994 * 126.20605 * 180.26181 * 18 17 16 38 38 H 1.08001 * 120.03945 * 0.02610 * 21 20 19 39 39 H 1.08003 * 119.96886 * 180.31730 * 22 21 20 40 40 H 1.08001 * 119.93384 * 179.72441 * 23 22 21 41 41 H 1.08003 * 119.96747 * 180.02562 * 24 23 22 42 42 H 1.08002 * 120.03784 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 1.5825 -0.2520 2.5244 6 6 2.6191 0.6688 3.1146 7 1 3.5130 0.9043 2.5561 8 6 2.4264 1.2108 4.3677 9 7 1.3381 0.9237 5.0480 10 14 3.7110 2.3529 5.0990 11 1 4.8336 2.5137 4.1403 12 1 3.0981 3.6778 5.3711 13 1 4.2229 1.7744 6.3673 14 6 2.8686 -1.7293 1.0748 15 8 3.2918 -2.0434 -0.0205 16 6 3.2863 -2.4865 2.2738 17 7 2.9886 -2.1767 3.5491 18 6 3.5406 -3.0875 4.3096 19 7 4.1788 -3.9600 3.5029 20 6 4.8987 -5.0872 3.9218 21 6 5.0047 -5.3817 5.2745 22 6 5.7099 -6.4965 5.6839 23 6 6.3202 -7.3122 4.7488 24 6 6.2211 -7.0184 3.4012 25 6 5.5123 -5.9083 2.9852 26 7 4.0148 -3.5820 2.2820 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.6332 0.2767 2.4391 35 1 1.4578 -1.1207 3.1710 36 1 1.2024 1.3053 5.9294 37 1 3.4901 -3.1347 5.3873 38 1 4.5321 -4.7425 6.0056 39 1 5.7885 -6.7290 6.7356 40 1 6.8748 -8.1809 5.0716 41 1 6.6984 -7.6575 2.6731 42 1 5.4349 -5.6796 1.9325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535799026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:57 Heat of formation + Delta-G solvation = 106.869003 kcal Electronic energy + Delta-G solvation = -26093.325010 eV Core-core repulsion = 22462.529275 eV Total energy + Delta-G solvation = -3630.795735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.20140 -39.45323 -38.87949 -35.74950 -34.40550 -32.74044 -31.88508 -31.29897 -30.92948 -29.30310 -27.05418 -26.60436 -24.77464 -23.86954 -22.86144 -22.24275 -21.31172 -20.34925 -18.80642 -18.01629 -16.66608 -16.49062 -16.23176 -15.99924 -15.83330 -14.97333 -14.82069 -14.32722 -14.19769 -14.14518 -13.68875 -13.47547 -13.08322 -12.88629 -12.39715 -12.26491 -12.16037 -11.88955 -11.63208 -11.47971 -11.39525 -11.08623 -10.89332 -10.81220 -10.65966 -10.58369 -10.31669 -9.85682 -9.54498 -9.53032 -9.40606 -9.30015 -9.22449 -8.46420 -8.25843 -7.61841 -5.94293 -3.93559 0.63447 1.04928 2.08538 2.40148 2.72773 3.30677 3.39034 3.44330 3.54580 3.68920 4.06683 4.41786 4.48611 4.55384 4.68576 4.83350 4.95278 5.06205 5.09976 5.32899 5.41410 5.44716 5.54536 5.71110 5.72646 5.87726 6.02953 6.03661 6.15464 6.18543 6.21977 6.38590 6.42935 6.47418 6.50447 6.74155 6.84231 6.92537 6.98900 7.07080 7.60439 7.81520 7.98391 8.30178 8.35606 8.49686 8.95125 9.09466 9.67328 11.14261 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013089 B = 0.004517 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.622455 B = 6197.036298 C = 7741.682643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 C -0.154 4.154 4 N -0.569 5.569 5 C 0.223 3.777 6 C -0.500 4.500 7 H 0.051 0.949 8 C 0.070 3.930 9 N -0.891 5.891 10 Si 0.883 3.117 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.610 3.390 15 O -0.557 6.557 16 C 0.170 3.830 17 N -0.400 5.400 18 C 0.176 3.824 19 N -0.266 5.266 20 C 0.145 3.855 21 C -0.127 4.127 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.100 4.100 25 C -0.109 4.109 26 N -0.272 5.272 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.258 0.742 37 H 0.220 0.780 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -13.273 0.921 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 C -0.212 4.212 4 N -0.300 5.300 5 C 0.104 3.896 6 C -0.539 4.539 7 H 0.070 0.930 8 C -0.131 4.131 9 N -0.531 5.531 10 Si 0.712 3.288 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.213 1.213 14 C 0.394 3.606 15 O -0.435 6.435 16 C -0.110 4.110 17 N -0.122 5.122 18 C -0.118 4.118 19 N -0.056 5.056 20 C 0.053 3.947 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.119 4.119 25 C -0.129 4.129 26 N -0.108 5.108 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.236 0.764 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.922 -13.275 -0.006 14.158 hybrid contribution 0.854 0.732 1.126 1.592 sum 5.776 -12.543 1.120 13.855 Atomic orbital electron populations 1.22137 0.95304 1.01833 1.02394 1.20933 0.93696 0.93544 0.88450 1.22081 1.01412 0.95626 1.02039 1.48183 1.43081 1.28613 1.10093 1.19982 0.95470 0.97729 0.76392 1.21278 1.05000 1.26504 1.01088 0.93029 1.24720 0.95217 0.96531 0.96621 1.69934 1.25937 1.44578 1.12602 0.86690 0.82169 0.80857 0.79130 1.20129 1.21212 1.21256 1.16286 0.79591 0.80264 0.84474 1.90706 1.56953 1.69766 1.26118 1.23903 0.99888 0.93451 0.93715 1.72244 1.19235 1.20616 1.00072 1.27002 0.95876 0.88106 1.00794 1.44747 1.36790 1.19619 1.04396 1.17707 0.96402 0.86822 0.93767 1.20911 1.01655 0.99288 0.92876 1.20990 0.96662 0.93760 1.00178 1.21280 0.99930 1.00010 0.93109 1.21100 0.98130 0.96402 0.96246 1.21091 0.97130 0.94334 1.00319 1.74280 1.19508 1.15542 1.01424 0.91255 0.92129 0.92915 0.89536 0.92824 0.93039 0.90514 0.94838 0.90610 0.93248 0.76361 0.84594 0.84792 0.85382 0.84968 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.10 37.16 0.34 -2.28 16 2 C 0.14 2.64 3.24 -67.93 -0.22 2.42 16 3 C -0.15 -2.81 8.92 37.16 0.33 -2.48 16 4 N -0.57 -12.82 2.38 -168.58 -0.40 -13.22 16 5 C 0.22 5.48 4.11 -5.20 -0.02 5.46 16 6 C -0.50 -13.24 7.45 -34.44 -0.26 -13.50 16 7 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 8 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 9 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 10 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.61 14.46 7.62 -12.33 -0.09 14.37 16 15 O -0.56 -13.84 16.44 5.32 0.09 -13.76 16 16 C 0.17 3.85 7.63 -156.30 -1.19 2.66 16 17 N -0.40 -8.81 7.17 -12.29 -0.09 -8.90 16 18 C 0.18 3.09 11.93 -90.21 -1.08 2.01 16 19 N -0.27 -4.56 3.52 -11.77 -0.04 -4.60 16 20 C 0.14 1.96 6.67 -83.60 -0.56 1.40 16 21 C -0.13 -1.31 9.45 -39.40 -0.37 -1.68 16 22 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 23 C -0.12 -0.98 10.04 -39.55 -0.40 -1.38 16 24 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 25 C -0.11 -1.35 9.61 -39.40 -0.38 -1.73 16 26 N -0.27 -5.60 11.33 32.08 0.36 -5.23 16 27 H 0.07 1.22 6.50 -51.93 -0.34 0.88 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16 31 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.54 7.29 -51.93 -0.38 1.16 16 34 H 0.03 0.85 6.20 -51.93 -0.32 0.53 16 35 H 0.08 1.98 5.29 -51.93 -0.27 1.70 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.22 2.83 7.01 -52.49 -0.37 2.46 16 38 H 0.14 1.15 6.71 -52.49 -0.35 0.80 16 39 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.14 1.90 7.68 -52.49 -0.40 1.50 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -32.89 352.77 -9.14 -42.03 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.30 Total: 1.50 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -4.79 Total: 4.55 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.57 Total: -55.83 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.89 -9.14 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535799026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.900 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds