Wall clock time and date at job start Tue Mar 31 2020 10:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47162 * 2 1 4 4 N 1.46501 * 109.46818 * 120.00023 * 2 1 3 5 5 C 1.46500 * 119.99752 * 121.42073 * 4 2 1 6 6 C 1.50700 * 109.47065 * 269.99694 * 5 4 2 7 7 H 1.08002 * 120.00124 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00257 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00148 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47076 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46992 * 119.99755 * 10 8 6 13 13 H 1.48490 * 109.47059 * 239.99842 * 10 8 6 14 14 C 1.34778 * 120.00143 * 301.41929 * 4 2 1 15 15 O 1.21571 * 119.99832 * 212.57214 * 14 4 2 16 16 C 1.47685 * 119.99828 * 32.57069 * 14 4 2 17 17 C 1.39696 * 120.07598 * 137.47327 * 16 14 4 18 18 C 1.37739 * 119.91475 * 179.97438 * 17 16 14 19 19 C 1.39022 * 120.08503 * 359.97438 * 18 17 16 20 20 N 1.39934 * 119.92249 * 179.97438 * 19 18 17 21 21 C 1.36314 * 126.86717 * 179.97438 * 20 19 18 22 22 C 1.34957 * 106.77684 * 179.97438 * 21 20 19 23 23 N 1.33373 * 109.02236 * 0.02562 * 22 21 20 24 24 N 1.28768 * 109.92290 * 359.97438 * 23 22 21 25 25 C 1.39028 * 120.15708 * 0.25773 * 19 18 17 26 26 C 1.37736 * 120.08113 * 359.48789 * 25 19 18 27 27 H 1.09001 * 109.47346 * 253.46734 * 1 2 3 28 28 H 1.08996 * 109.47017 * 13.47176 * 1 2 3 29 29 H 1.09007 * 109.46874 * 133.47139 * 1 2 3 30 30 H 1.09003 * 109.47169 * 240.00059 * 2 1 3 31 31 H 1.09000 * 109.47233 * 223.87547 * 3 2 1 32 32 H 1.09002 * 109.47186 * 343.87500 * 3 2 1 33 33 H 1.09002 * 109.47248 * 103.87699 * 3 2 1 34 34 H 1.08996 * 109.47454 * 29.99736 * 5 4 2 35 35 H 1.08999 * 109.47223 * 149.99732 * 5 4 2 36 36 H 0.96996 * 120.00411 * 180.02562 * 9 8 6 37 37 H 1.07996 * 120.04030 * 359.94903 * 17 16 14 38 38 H 1.08008 * 119.95581 * 180.02562 * 18 17 16 39 39 H 1.07999 * 126.60460 * 359.72421 * 21 20 19 40 40 H 1.08004 * 125.49214 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.95866 * 179.72332 * 25 19 18 42 42 H 1.07999 * 120.04593 * 180.25925 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8860 -1.8633 1.0620 6 6 2.0404 -3.1090 0.9956 7 1 0.9642 -3.0346 1.0486 8 6 2.6406 -4.3438 0.8684 9 7 3.9510 -4.4345 0.8044 10 14 1.5924 -5.8878 0.7869 11 1 0.1573 -5.5173 0.8786 12 1 1.8412 -6.5877 -0.4991 13 1 1.9454 -6.7859 1.9155 14 6 1.6692 -0.2471 2.4201 15 8 2.4420 -0.3622 3.3515 16 6 0.3480 0.3786 2.6297 17 6 -0.4036 0.0640 3.7644 18 6 -1.6352 0.6500 3.9568 19 6 -2.1303 1.5539 3.0237 20 7 -3.3821 2.1468 3.2223 21 6 -4.0002 3.0458 2.4050 22 6 -5.1826 3.3475 2.9813 23 7 -5.2992 2.6615 4.1192 24 7 -4.2523 1.9345 4.3025 25 6 -1.3871 1.8657 1.8908 26 6 -0.1525 1.2876 1.6944 27 1 -0.3634 -0.2924 0.9852 28 1 -0.3633 0.9994 -0.2394 29 1 -0.3633 -0.7071 -0.7459 30 1 1.8934 -0.5138 -0.8900 31 1 2.8596 1.5381 -0.7123 32 1 1.2304 2.1141 -0.2854 33 1 2.3935 1.7028 0.9977 34 1 3.4764 -1.7761 0.1499 35 1 3.5529 -1.9223 1.9222 36 1 4.3733 -5.3031 0.7145 37 1 -0.0196 -0.6380 4.4896 38 1 -2.2166 0.4075 4.8341 39 1 -3.6156 3.4433 1.4774 40 1 -5.9160 4.0345 2.5854 41 1 -1.7768 2.5649 1.1658 42 1 0.4261 1.5335 0.8162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536360994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:18 Heat of formation + Delta-G solvation = 179.277641 kcal Electronic energy + Delta-G solvation = -26127.095901 eV Core-core repulsion = 22499.440040 eV Total energy + Delta-G solvation = -3627.655861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.43807 -41.12679 -38.33493 -36.67031 -34.66614 -33.35306 -32.05024 -31.12787 -30.55170 -29.93468 -27.34595 -26.97135 -24.96495 -23.77485 -23.01209 -22.21905 -21.64718 -21.18484 -18.85430 -18.68506 -16.74537 -16.44628 -16.08060 -16.05851 -15.77777 -15.30835 -14.92972 -14.80902 -14.54840 -14.19657 -14.13493 -13.84472 -13.44675 -13.12261 -12.61685 -12.44640 -12.34249 -12.26406 -12.14412 -11.84277 -11.45347 -11.37838 -11.26445 -11.19203 -10.93102 -10.82104 -10.63174 -10.31238 -10.21366 -9.72867 -9.65074 -9.32246 -8.95228 -8.54252 -8.25957 -7.71652 -6.14428 -4.21258 0.21415 1.20380 1.54379 1.89345 2.27656 2.99383 3.22666 3.31135 3.34104 3.57076 3.79280 4.16340 4.20132 4.34816 4.57752 4.67672 4.73303 4.78547 4.83961 4.95782 5.09636 5.14917 5.19737 5.24453 5.36869 5.49703 5.56337 5.63834 5.69995 5.75355 5.80003 5.97104 6.05702 6.12496 6.20385 6.28692 6.33358 6.42031 6.71854 6.98402 7.32023 7.47424 7.82793 7.86750 8.11019 8.25111 8.65296 8.87899 9.45161 10.92868 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.003586 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.003557 B = 7805.673999 C = 8409.847349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.135 3.865 3 C -0.181 4.181 4 N -0.607 5.607 5 C 0.248 3.752 6 C -0.536 4.536 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.891 5.891 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.570 3.430 15 O -0.525 6.525 16 C -0.138 4.138 17 C -0.041 4.041 18 C -0.129 4.129 19 C 0.153 3.847 20 N -0.311 5.311 21 C 0.022 3.978 22 C -0.076 4.076 23 N -0.237 5.237 24 N -0.063 5.063 25 C -0.169 4.169 26 C -0.066 4.066 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.196 0.804 40 H 0.189 0.811 41 H 0.134 0.866 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 16.468 -3.450 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.030 3.970 3 C -0.239 4.239 4 N -0.339 5.339 5 C 0.129 3.871 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.529 5.529 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.357 3.643 15 O -0.401 6.401 16 C -0.142 4.142 17 C -0.060 4.060 18 C -0.149 4.149 19 C 0.060 3.940 20 N -0.092 5.092 21 C -0.128 4.128 22 C -0.232 4.232 23 N -0.106 5.106 24 N -0.041 5.041 25 C -0.190 4.190 26 C -0.084 4.084 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.212 0.788 40 H 0.206 0.794 41 H 0.151 0.849 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.648 15.510 -1.633 19.465 hybrid contribution -0.471 -0.536 -1.227 1.419 sum -12.119 14.974 -2.859 19.475 Atomic orbital electron populations 1.23738 0.96418 1.01399 1.04260 1.21041 0.93350 0.92335 0.90279 1.22736 1.01630 0.96088 1.03425 1.48041 1.51470 1.31334 1.03089 1.19373 0.89218 0.79855 0.98608 1.21545 0.93599 0.91051 1.51253 0.92222 1.24943 0.94996 0.99078 0.94939 1.69938 1.08503 1.24958 1.49537 0.86463 0.80476 0.82908 0.77734 1.19752 1.20854 1.20792 1.17899 0.85174 0.77691 0.83501 1.90737 1.51534 1.54896 1.42964 1.20529 0.97296 1.00112 0.96265 1.21124 0.92176 0.97195 0.95512 1.20763 0.96877 0.97463 0.99771 1.17707 0.82247 0.96899 0.97108 1.48051 1.14258 1.29700 1.17215 1.23574 0.95108 0.94997 0.99161 1.23245 0.98926 1.06379 0.94627 1.74352 1.15469 1.05093 1.15666 1.82154 0.95853 1.20080 1.05974 1.20619 0.96156 1.04675 0.97533 1.22918 0.95500 0.91979 0.98016 0.88811 0.91249 0.91987 0.88216 0.91186 0.91297 0.91554 0.94807 0.93628 0.92619 0.83920 0.84059 0.78762 0.79384 0.84853 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 7.72 37.16 0.29 -2.24 16 2 C 0.14 1.97 3.27 -67.93 -0.22 1.75 16 3 C -0.18 -2.02 8.36 37.15 0.31 -1.71 16 4 N -0.61 -12.01 2.38 -168.64 -0.40 -12.41 16 5 C 0.25 6.14 5.32 -5.19 -0.03 6.11 16 6 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 10 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.57 11.39 5.85 -12.40 -0.07 11.32 16 15 O -0.52 -12.48 16.79 5.30 0.09 -12.39 16 16 C -0.14 -2.16 4.27 -104.95 -0.45 -2.61 16 17 C -0.04 -0.61 9.65 -39.22 -0.38 -0.99 16 18 C -0.13 -1.70 9.66 -39.47 -0.38 -2.09 16 19 C 0.15 1.84 6.70 -83.58 -0.56 1.28 16 20 N -0.31 -3.67 3.85 -10.50 -0.04 -3.71 16 21 C 0.02 0.18 10.92 -16.72 -0.18 0.00 16 22 C -0.08 -0.68 11.86 -18.05 -0.21 -0.90 16 23 N -0.24 -3.06 12.33 30.09 0.37 -2.69 16 24 N -0.06 -0.88 13.15 60.35 0.79 -0.09 16 25 C -0.17 -1.70 9.20 -39.47 -0.36 -2.06 16 26 C -0.07 -0.79 4.88 -39.22 -0.19 -0.98 16 27 H 0.09 1.37 4.00 -61.24 -0.24 1.13 16 28 H 0.07 0.61 5.23 -51.93 -0.27 0.34 16 29 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.10 1.50 7.81 -51.93 -0.41 1.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.54 6.17 -51.93 -0.32 0.21 16 33 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 34 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 35 H 0.05 1.29 7.36 -51.93 -0.38 0.90 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.14 1.79 7.72 -52.48 -0.41 1.38 16 39 H 0.20 0.74 7.16 -52.49 -0.38 0.36 16 40 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.13 0.85 6.82 -52.49 -0.36 0.49 16 42 H 0.19 1.91 1.06 -53.77 -0.06 1.85 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -33.70 341.75 -6.01 -39.71 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.82 Total: 1.33 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.86 Total: -6.14 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.46 Total: -43.69 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.70 -6.01 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536360994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.988 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds