Wall clock time and date at job start Tue Mar 31 2020 10:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47162 * 2 1 4 4 N 1.46501 * 109.46818 * 120.00023 * 2 1 3 5 5 C 1.46500 * 119.99752 * 121.42073 * 4 2 1 6 6 C 1.50700 * 109.47065 * 269.99694 * 5 4 2 7 7 H 1.08002 * 120.00124 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00257 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00148 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47076 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46992 * 119.99755 * 10 8 6 13 13 H 1.48490 * 109.47059 * 239.99842 * 10 8 6 14 14 C 1.34778 * 120.00143 * 301.41929 * 4 2 1 15 15 O 1.21571 * 119.99832 * 212.57214 * 14 4 2 16 16 C 1.47685 * 119.99828 * 32.57069 * 14 4 2 17 17 C 1.39696 * 120.07598 * 137.47327 * 16 14 4 18 18 C 1.37739 * 119.91475 * 179.97438 * 17 16 14 19 19 C 1.39022 * 120.08503 * 359.97438 * 18 17 16 20 20 N 1.39934 * 119.92249 * 179.97438 * 19 18 17 21 21 C 1.36314 * 126.86717 * 179.97438 * 20 19 18 22 22 C 1.34957 * 106.77684 * 179.97438 * 21 20 19 23 23 N 1.33373 * 109.02236 * 0.02562 * 22 21 20 24 24 N 1.28768 * 109.92290 * 359.97438 * 23 22 21 25 25 C 1.39028 * 120.15708 * 0.25773 * 19 18 17 26 26 C 1.37736 * 120.08113 * 359.48789 * 25 19 18 27 27 H 1.09001 * 109.47346 * 253.46734 * 1 2 3 28 28 H 1.08996 * 109.47017 * 13.47176 * 1 2 3 29 29 H 1.09007 * 109.46874 * 133.47139 * 1 2 3 30 30 H 1.09003 * 109.47169 * 240.00059 * 2 1 3 31 31 H 1.09000 * 109.47233 * 223.87547 * 3 2 1 32 32 H 1.09002 * 109.47186 * 343.87500 * 3 2 1 33 33 H 1.09002 * 109.47248 * 103.87699 * 3 2 1 34 34 H 1.08996 * 109.47454 * 29.99736 * 5 4 2 35 35 H 1.08999 * 109.47223 * 149.99732 * 5 4 2 36 36 H 0.96996 * 120.00411 * 180.02562 * 9 8 6 37 37 H 1.07996 * 120.04030 * 359.94903 * 17 16 14 38 38 H 1.08008 * 119.95581 * 180.02562 * 18 17 16 39 39 H 1.07999 * 126.60460 * 359.72421 * 21 20 19 40 40 H 1.08004 * 125.49214 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.95866 * 179.72332 * 25 19 18 42 42 H 1.07999 * 120.04593 * 180.25925 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8860 -1.8633 1.0620 6 6 2.0404 -3.1090 0.9956 7 1 0.9642 -3.0346 1.0486 8 6 2.6406 -4.3438 0.8684 9 7 3.9510 -4.4345 0.8044 10 14 1.5924 -5.8878 0.7869 11 1 0.1573 -5.5173 0.8786 12 1 1.8412 -6.5877 -0.4991 13 1 1.9454 -6.7859 1.9155 14 6 1.6692 -0.2471 2.4201 15 8 2.4420 -0.3622 3.3515 16 6 0.3480 0.3786 2.6297 17 6 -0.4036 0.0640 3.7644 18 6 -1.6352 0.6500 3.9568 19 6 -2.1303 1.5539 3.0237 20 7 -3.3821 2.1468 3.2223 21 6 -4.0002 3.0458 2.4050 22 6 -5.1826 3.3475 2.9813 23 7 -5.2992 2.6615 4.1192 24 7 -4.2523 1.9345 4.3025 25 6 -1.3871 1.8657 1.8908 26 6 -0.1525 1.2876 1.6944 27 1 -0.3634 -0.2924 0.9852 28 1 -0.3633 0.9994 -0.2394 29 1 -0.3633 -0.7071 -0.7459 30 1 1.8934 -0.5138 -0.8900 31 1 2.8596 1.5381 -0.7123 32 1 1.2304 2.1141 -0.2854 33 1 2.3935 1.7028 0.9977 34 1 3.4764 -1.7761 0.1499 35 1 3.5529 -1.9223 1.9222 36 1 4.3733 -5.3031 0.7145 37 1 -0.0196 -0.6380 4.4896 38 1 -2.2166 0.4075 4.8341 39 1 -3.6156 3.4433 1.4774 40 1 -5.9160 4.0345 2.5854 41 1 -1.7768 2.5649 1.1658 42 1 0.4261 1.5335 0.8162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536360994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:17 Heat of formation + Delta-G solvation = 156.717525 kcal Electronic energy + Delta-G solvation = -26128.074181 eV Core-core repulsion = 22499.440040 eV Total energy + Delta-G solvation = -3628.634141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.23340 -42.30786 -39.59316 -38.04017 -35.86258 -35.02347 -33.57377 -32.04179 -31.58009 -30.93932 -29.12804 -27.97053 -26.20210 -24.80232 -24.56454 -23.35517 -22.73244 -22.07423 -20.05812 -19.61390 -18.67866 -17.90234 -17.52335 -16.87533 -16.70376 -16.52383 -16.42163 -15.97062 -15.59342 -15.40580 -15.20347 -14.93661 -14.70061 -14.25426 -14.14084 -13.69457 -13.63095 -13.43101 -13.25259 -13.19701 -12.91055 -12.75642 -12.56688 -12.27073 -12.20605 -12.17425 -12.12855 -11.76159 -11.65169 -11.28548 -10.91444 -10.67870 -10.39568 -9.87276 -9.44706 -9.22281 -8.24729 -6.41146 -0.71302 0.23735 0.62633 1.11022 1.35031 1.37074 1.48113 1.56473 1.62805 2.20764 2.38104 2.61695 3.04391 3.33063 3.51068 3.58756 3.73438 3.85021 3.90508 4.04945 4.15444 4.17101 4.21241 4.32605 4.41895 4.53655 4.63138 4.65896 4.82961 4.87005 4.93930 5.00426 5.04509 5.11878 5.18158 5.20325 5.21809 5.30035 5.41478 5.47162 5.57644 5.85318 5.88143 6.03190 6.66364 6.72904 7.09642 7.13214 7.32797 8.81631 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.003586 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.003557 B = 7805.673999 C = 8409.847349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.121 3.879 3 C -0.177 4.177 4 N -0.612 5.612 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.058 0.942 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.269 1.269 13 H -0.283 1.283 14 C 0.564 3.436 15 O -0.584 6.584 16 C -0.162 4.162 17 C -0.055 4.055 18 C -0.139 4.139 19 C 0.160 3.840 20 N -0.322 5.322 21 C 0.043 3.957 22 C -0.081 4.081 23 N -0.266 5.266 24 N -0.118 5.118 25 C -0.145 4.145 26 C -0.050 4.050 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.046 0.954 34 H 0.024 0.976 35 H -0.004 1.004 36 H 0.268 0.732 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.252 0.748 40 H 0.226 0.774 41 H 0.194 0.806 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 19.327 -6.706 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.018 3.982 3 C -0.234 4.234 4 N -0.344 5.344 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.194 1.194 13 H -0.209 1.209 14 C 0.355 3.645 15 O -0.465 6.465 16 C -0.166 4.166 17 C -0.075 4.075 18 C -0.159 4.159 19 C 0.067 3.933 20 N -0.104 5.104 21 C -0.107 4.107 22 C -0.237 4.237 23 N -0.134 5.134 24 N -0.094 5.094 25 C -0.165 4.165 26 C -0.067 4.067 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.268 0.732 40 H 0.243 0.757 41 H 0.211 0.789 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.872 18.390 -4.902 24.154 hybrid contribution 0.458 -1.305 -0.252 1.406 sum -14.414 17.085 -5.154 22.940 Atomic orbital electron populations 1.23749 0.94125 1.04534 1.03177 1.21464 0.95378 0.93836 0.87506 1.22715 1.03777 0.94182 1.02730 1.48017 1.50958 1.30238 1.05195 1.18810 0.89233 0.81926 0.95774 1.21789 0.93595 0.92041 1.50927 0.92392 1.25838 0.96187 1.02410 0.94470 1.70058 1.10206 1.25907 1.50405 0.85401 0.78887 0.78718 0.78031 1.19043 1.19437 1.20887 1.18625 0.86367 0.76969 0.82574 1.90685 1.53564 1.57644 1.44586 1.20154 0.95321 1.02670 0.98421 1.20959 0.93260 0.97862 0.95416 1.20665 0.96153 0.98476 1.00615 1.17868 0.82562 0.95773 0.97081 1.48142 1.13986 1.30555 1.17721 1.24576 0.94043 0.92411 0.99632 1.24033 1.00192 1.06092 0.93354 1.74330 1.15604 1.05788 1.17667 1.82187 0.97079 1.22252 1.07931 1.21116 0.94311 1.03841 0.97210 1.23073 0.96202 0.90296 0.97161 0.90787 0.85893 0.92090 0.89144 0.90358 0.86097 0.93482 0.95763 0.98569 0.92347 0.86207 0.84590 0.73247 0.75717 0.78939 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.28 7.72 71.98 0.56 -3.72 16 2 C 0.12 3.38 3.27 44.99 0.15 3.53 16 3 C -0.18 -3.40 8.36 71.98 0.60 -2.80 16 4 N -0.61 -25.28 2.38 -805.72 -1.92 -27.19 16 5 C 0.26 13.95 5.32 85.63 0.46 14.40 16 6 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 7 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.58 5.46 84.66 0.46 1.05 16 9 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 10 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 C 0.56 23.89 5.85 86.74 0.51 24.39 16 15 O -0.58 -30.40 16.79 -3.94 -0.07 -30.47 16 16 C -0.16 -5.10 4.27 -20.08 -0.09 -5.19 16 17 C -0.06 -1.74 9.65 22.50 0.22 -1.53 16 18 C -0.14 -3.70 9.66 22.34 0.22 -3.48 16 19 C 0.16 3.34 6.70 38.23 0.26 3.60 16 20 N -0.32 -6.47 3.85 -187.14 -0.72 -7.19 16 21 C 0.04 0.46 10.92 83.24 0.91 1.37 16 22 C -0.08 -1.09 11.86 83.70 0.99 -0.10 16 23 N -0.27 -6.39 12.33 -58.72 -0.72 -7.11 16 24 N -0.12 -3.17 13.15 37.02 0.49 -2.69 16 25 C -0.14 -2.05 9.20 22.34 0.21 -1.85 16 26 C -0.05 -1.00 4.88 22.50 0.11 -0.89 16 27 H 0.07 1.99 4.00 -11.13 -0.04 1.94 16 28 H 0.12 1.28 5.23 -2.39 -0.01 1.26 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 2.66 7.81 -2.39 -0.02 2.64 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.05 6.17 -2.39 -0.01 1.04 16 33 H 0.05 1.13 6.82 -2.39 -0.02 1.11 16 34 H 0.02 1.30 7.93 -2.39 -0.02 1.28 16 35 H 0.00 -0.24 7.36 -2.39 -0.02 -0.26 16 36 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.14 3.66 7.72 -2.91 -0.02 3.64 16 39 H 0.25 -0.46 7.16 -2.91 -0.02 -0.48 16 40 H 0.23 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.19 0.50 6.82 -2.91 -0.02 0.48 16 42 H 0.21 3.15 1.06 -4.12 0.00 3.15 16 Total: -1.00 -84.19 341.75 6.19 -77.99 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.03 Total: 6.86 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.79 Total: -1.37 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -2.59 Total: -98.97 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.07 Total: -30.47 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -84.19 6.19 -77.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536360994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.710 kcal (2) G-P(sol) polarization free energy of solvation -84.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds