Wall clock time and date at job start Tue Mar 31 2020 10:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46912 * 2 1 4 4 N 1.46499 * 109.46959 * 119.99829 * 2 1 3 5 5 C 1.35306 * 125.86833 * 275.29424 * 4 2 1 6 6 C 1.35356 * 106.17184 * 180.18984 * 5 4 2 7 7 C 1.50707 * 126.74830 * 179.85168 * 6 5 4 8 8 N 1.46498 * 109.47071 * 94.71058 * 7 6 5 9 9 C 1.34770 * 119.99948 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00104 * 0.02562 * 9 8 7 11 11 C 1.47890 * 119.99746 * 179.97438 * 9 8 7 12 12 C 1.39918 * 120.02788 * 359.73282 * 11 9 8 13 13 C 1.38327 * 120.36083 * 180.29362 * 12 11 9 14 14 C 1.37759 * 120.41108 * 359.95771 * 13 12 11 15 15 C 1.40751 * 120.03894 * 0.04262 * 14 13 12 16 16 C 1.41435 * 120.17866 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99305 * 334.92409 * 16 15 14 18 18 C 1.39935 * 120.00365 * 154.92772 * 16 15 14 19 19 N 1.30833 * 119.99893 * 342.58405 * 18 16 15 20 20 Si 1.86796 * 120.00048 * 162.58545 * 18 16 15 21 21 H 1.48500 * 109.47378 * 90.00359 * 20 18 16 22 22 H 1.48506 * 109.47024 * 209.99844 * 20 18 16 23 23 H 1.48497 * 109.47242 * 329.99643 * 20 18 16 24 24 C 1.39002 * 120.02230 * 180.02562 * 11 9 8 25 25 N 1.33767 * 106.49615 * 359.59367 * 6 5 4 26 26 N 1.28634 * 108.88866 * 0.25693 * 25 6 5 27 27 H 1.09000 * 109.47549 * 300.00138 * 1 2 3 28 28 H 1.09005 * 109.47126 * 59.99983 * 1 2 3 29 29 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46729 * 240.00268 * 2 1 3 31 31 H 1.09005 * 109.47239 * 299.99947 * 3 2 1 32 32 H 1.08996 * 109.47515 * 59.99915 * 3 2 1 33 33 H 1.09001 * 109.47223 * 180.02562 * 3 2 1 34 34 H 1.08000 * 126.91961 * 0.04050 * 5 4 2 35 35 H 1.09000 * 109.47324 * 334.71133 * 7 6 5 36 36 H 1.09004 * 109.46875 * 214.71145 * 7 6 5 37 37 H 0.97002 * 119.99473 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.81817 * 0.25017 * 12 11 9 39 39 H 1.08002 * 119.79615 * 179.97438 * 13 12 11 40 40 H 1.07995 * 119.98263 * 180.02562 * 14 13 12 41 41 H 0.96995 * 120.00176 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.19934 * 359.71149 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1356 2.4186 6 6 2.6557 -1.1216 3.2188 7 6 3.0064 -1.0069 4.6800 8 7 1.8586 -1.4195 5.4915 9 6 1.9422 -1.3993 6.8365 10 8 2.9697 -1.0383 7.3762 11 6 0.7833 -1.8152 7.6557 12 6 -0.4021 -2.2244 7.0351 13 6 -1.4923 -2.6091 7.7946 14 6 -1.4236 -2.5946 9.1704 15 6 -0.2396 -2.1860 9.8126 16 6 -0.1657 -2.1706 11.2249 17 1 -1.0668 -2.0696 11.8116 18 6 1.0749 -2.2861 11.8620 19 7 2.1087 -2.7426 11.2028 20 14 1.2548 -1.7886 13.6534 21 1 0.9785 -2.9603 14.5228 22 1 2.6383 -1.3070 13.8969 23 1 0.2908 -0.7028 13.9648 24 6 0.8688 -1.7941 9.0429 25 7 2.7407 -2.2193 2.4590 26 7 2.3558 -1.9307 1.2660 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.9903 0.8887 2.6989 35 1 3.2627 0.0268 4.9121 36 1 3.8578 -1.6507 4.9009 37 1 1.0387 -1.7078 5.0608 38 1 -0.4664 -2.2394 5.9571 39 1 -2.4029 -2.9229 7.3061 40 1 -2.2788 -2.8968 9.7567 41 1 2.9687 -2.8224 11.6443 42 1 1.7817 -1.4788 9.5262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552205991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:34 Heat of formation + Delta-G solvation = 74.185099 kcal Electronic energy + Delta-G solvation = -24712.619018 eV Core-core repulsion = 21080.406002 eV Total energy + Delta-G solvation = -3632.213016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.50274 -39.13450 -37.10794 -36.84377 -34.63616 -33.69404 -31.85276 -31.38176 -30.04884 -29.40554 -28.03506 -26.66335 -25.19831 -24.18347 -22.48009 -21.47885 -20.98229 -20.79718 -19.54150 -17.94870 -17.39177 -16.64595 -16.17366 -15.46132 -15.28436 -15.09564 -14.94905 -14.64706 -14.45108 -13.84881 -13.79112 -13.39935 -13.18120 -13.04942 -12.93214 -12.62634 -12.45931 -12.39104 -12.12682 -11.93339 -11.68750 -11.60398 -11.13167 -11.04837 -10.94508 -10.73147 -10.46985 -10.31871 -10.02237 -9.66817 -9.57243 -9.18583 -8.93071 -8.65017 -7.60003 -7.48873 -6.76890 -4.38613 1.36618 2.01721 2.24015 2.26542 2.83927 3.09821 3.12745 3.18483 3.79222 3.88774 3.91938 3.94999 4.13415 4.20265 4.34647 4.61543 4.66779 4.81943 4.84020 4.97162 5.02891 5.07803 5.27106 5.42188 5.50233 5.56175 5.63177 5.86095 5.90647 6.01237 6.11973 6.30701 6.35823 6.74226 6.83772 7.01496 7.04475 7.24019 7.40958 7.72895 7.78604 7.95133 8.11674 8.21682 8.34584 8.53112 8.82980 8.86151 8.96915 10.17983 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.002556 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.582837 B =10950.748563 C =11496.291991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 C -0.166 4.166 4 N -0.288 5.288 5 C -0.029 4.029 6 C -0.034 4.034 7 C 0.210 3.790 8 N -0.732 5.732 9 C 0.566 3.434 10 O -0.545 6.545 11 C -0.127 4.127 12 C -0.216 4.216 13 C -0.098 4.098 14 C -0.211 4.211 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.909 3.091 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.091 4.091 25 N -0.252 5.252 26 N -0.086 5.086 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.191 0.809 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 8.921 -20.309 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.036 3.964 3 C -0.225 4.225 4 N -0.082 5.082 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.084 3.916 8 N -0.386 5.386 9 C 0.357 3.643 10 O -0.423 6.423 11 C -0.130 4.130 12 C -0.236 4.236 13 C -0.116 4.116 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.111 4.111 25 N -0.119 5.119 26 N -0.065 5.065 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.208 0.792 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.188 7.793 -20.705 22.123 hybrid contribution -0.440 0.994 0.866 1.390 sum -0.628 8.787 -19.839 21.707 Atomic orbital electron populations 1.22243 0.92225 1.04029 1.03969 1.21727 0.96035 0.93724 0.84952 1.22228 1.02613 0.93213 1.04396 1.47633 1.42341 1.08399 1.09859 1.23361 1.07183 1.02279 0.85299 1.22025 1.06629 0.90335 0.98221 1.19280 0.90088 1.01421 0.80811 1.45943 1.16374 1.70038 1.06282 1.18823 0.88261 0.76271 0.80941 1.90699 1.31576 1.47888 1.72162 1.19446 0.92718 1.06494 0.94325 1.20336 0.94316 1.12349 0.96646 1.20429 0.96611 1.00417 0.94183 1.21099 0.99511 1.09114 0.93420 1.17599 0.90684 0.88554 0.93558 1.19566 0.93648 1.44336 0.91378 0.90122 1.25964 0.95340 0.92435 1.00878 1.69790 1.01867 1.30436 1.38648 0.86292 0.78642 0.79903 0.81811 1.19468 1.19952 1.18416 1.21635 1.00316 0.98864 0.90307 1.75134 1.15734 1.24409 0.96645 1.78329 1.16082 0.96096 1.16008 0.91242 0.89636 0.91127 0.86800 0.89342 0.90932 0.91133 0.79227 0.89972 0.89879 0.76463 0.89379 0.88975 0.88635 0.90417 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 9.52 37.16 0.35 -0.42 16 2 C 0.14 0.75 3.85 -67.93 -0.26 0.49 16 3 C -0.17 -0.55 8.84 37.16 0.33 -0.22 16 4 N -0.29 -2.80 3.25 -54.76 -0.18 -2.98 16 5 C -0.03 -0.29 10.62 -17.05 -0.18 -0.47 16 6 C -0.03 -0.45 6.62 -82.77 -0.55 -0.99 16 7 C 0.21 3.08 6.23 -5.19 -0.03 3.05 16 8 N -0.73 -12.64 5.50 -62.41 -0.34 -12.99 16 9 C 0.57 12.53 7.77 -12.31 -0.10 12.44 16 10 O -0.55 -13.65 16.33 5.33 0.09 -13.57 16 11 C -0.13 -3.03 5.87 -105.03 -0.62 -3.65 16 12 C -0.22 -4.66 9.55 -38.92 -0.37 -5.03 16 13 C -0.10 -2.13 10.01 -39.72 -0.40 -2.53 16 14 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 15 C 0.10 2.63 5.57 -106.87 -0.59 2.03 16 16 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 17 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.78 -20.96 10.97 55.55 0.61 -20.35 16 20 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 24 C -0.09 -2.45 8.23 -38.44 -0.32 -2.76 16 25 N -0.25 -3.88 12.41 33.29 0.41 -3.47 16 26 N -0.09 -1.16 13.17 60.35 0.79 -0.37 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.22 7.18 -51.93 -0.37 -0.15 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.19 1.23 7.31 -52.49 -0.38 0.85 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.40 6.39 6.48 -40.82 -0.26 6.12 16 38 H 0.09 1.61 6.38 -52.49 -0.33 1.28 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 42 H 0.13 3.88 5.77 -52.49 -0.30 3.57 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -32.83 359.75 -7.21 -40.03 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.44 Total: 8.68 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.54 Total: -14.26 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.30 Total: -40.15 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.83 -7.21 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552205991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.218 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds