Wall clock time and date at job start Tue Mar 31 2020 10:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46912 * 2 1 4 4 N 1.46499 * 109.46959 * 119.99829 * 2 1 3 5 5 C 1.35306 * 125.86833 * 275.29424 * 4 2 1 6 6 C 1.35356 * 106.17184 * 180.18984 * 5 4 2 7 7 C 1.50707 * 126.74830 * 179.85168 * 6 5 4 8 8 N 1.46498 * 109.47071 * 94.71058 * 7 6 5 9 9 C 1.34770 * 119.99948 * 179.97438 * 8 7 6 10 10 O 1.21546 * 120.00104 * 0.02562 * 9 8 7 11 11 C 1.47890 * 119.99746 * 179.97438 * 9 8 7 12 12 C 1.39918 * 120.02788 * 359.73282 * 11 9 8 13 13 C 1.38327 * 120.36083 * 180.29362 * 12 11 9 14 14 C 1.37759 * 120.41108 * 359.95771 * 13 12 11 15 15 C 1.40751 * 120.03894 * 0.04262 * 14 13 12 16 16 C 1.41435 * 120.17866 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99305 * 334.92409 * 16 15 14 18 18 C 1.39935 * 120.00365 * 154.92772 * 16 15 14 19 19 N 1.30833 * 119.99893 * 342.58405 * 18 16 15 20 20 Si 1.86796 * 120.00048 * 162.58545 * 18 16 15 21 21 H 1.48500 * 109.47378 * 90.00359 * 20 18 16 22 22 H 1.48506 * 109.47024 * 209.99844 * 20 18 16 23 23 H 1.48497 * 109.47242 * 329.99643 * 20 18 16 24 24 C 1.39002 * 120.02230 * 180.02562 * 11 9 8 25 25 N 1.33767 * 106.49615 * 359.59367 * 6 5 4 26 26 N 1.28634 * 108.88866 * 0.25693 * 25 6 5 27 27 H 1.09000 * 109.47549 * 300.00138 * 1 2 3 28 28 H 1.09005 * 109.47126 * 59.99983 * 1 2 3 29 29 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46729 * 240.00268 * 2 1 3 31 31 H 1.09005 * 109.47239 * 299.99947 * 3 2 1 32 32 H 1.08996 * 109.47515 * 59.99915 * 3 2 1 33 33 H 1.09001 * 109.47223 * 180.02562 * 3 2 1 34 34 H 1.08000 * 126.91961 * 0.04050 * 5 4 2 35 35 H 1.09000 * 109.47324 * 334.71133 * 7 6 5 36 36 H 1.09004 * 109.46875 * 214.71145 * 7 6 5 37 37 H 0.97002 * 119.99473 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.81817 * 0.25017 * 12 11 9 39 39 H 1.08002 * 119.79615 * 179.97438 * 13 12 11 40 40 H 1.07995 * 119.98263 * 180.02562 * 14 13 12 41 41 H 0.96995 * 120.00176 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.19934 * 359.71149 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1356 2.4186 6 6 2.6557 -1.1216 3.2188 7 6 3.0064 -1.0069 4.6800 8 7 1.8586 -1.4195 5.4915 9 6 1.9422 -1.3993 6.8365 10 8 2.9697 -1.0383 7.3762 11 6 0.7833 -1.8152 7.6557 12 6 -0.4021 -2.2244 7.0351 13 6 -1.4923 -2.6091 7.7946 14 6 -1.4236 -2.5946 9.1704 15 6 -0.2396 -2.1860 9.8126 16 6 -0.1657 -2.1706 11.2249 17 1 -1.0668 -2.0696 11.8116 18 6 1.0749 -2.2861 11.8620 19 7 2.1087 -2.7426 11.2028 20 14 1.2548 -1.7886 13.6534 21 1 0.9785 -2.9603 14.5228 22 1 2.6383 -1.3070 13.8969 23 1 0.2908 -0.7028 13.9648 24 6 0.8688 -1.7941 9.0429 25 7 2.7407 -2.2193 2.4590 26 7 2.3558 -1.9307 1.2660 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.9903 0.8887 2.6989 35 1 3.2627 0.0268 4.9121 36 1 3.8578 -1.6507 4.9009 37 1 1.0387 -1.7078 5.0608 38 1 -0.4664 -2.2394 5.9571 39 1 -2.4029 -2.9229 7.3061 40 1 -2.2788 -2.8968 9.7567 41 1 2.9687 -2.8224 11.6443 42 1 1.7817 -1.4788 9.5262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552205991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:33 Heat of formation + Delta-G solvation = 52.398480 kcal Electronic energy + Delta-G solvation = -24713.563757 eV Core-core repulsion = 21080.406002 eV Total energy + Delta-G solvation = -3633.157754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.39023 -40.86246 -38.83966 -37.55966 -36.07098 -35.54601 -32.98903 -32.27491 -31.70719 -31.26110 -28.42823 -27.88738 -27.03538 -24.90681 -24.11113 -22.84480 -22.42625 -21.59379 -21.24021 -19.58921 -18.41250 -17.77506 -17.54223 -17.02222 -16.67209 -16.42001 -16.29521 -15.82952 -15.47749 -15.34558 -15.04371 -14.56156 -14.38532 -14.25532 -14.12900 -14.01593 -13.46452 -13.33005 -13.17586 -12.93748 -12.76555 -12.76209 -12.54150 -12.50339 -12.18901 -12.17853 -11.91254 -11.86958 -11.50596 -11.15802 -11.05371 -10.89884 -10.31788 -10.18374 -9.46498 -9.37891 -8.64928 -6.36938 0.38511 0.54496 1.01615 1.19942 1.37978 1.38011 1.47800 1.54429 2.10205 2.21038 2.44569 2.80141 3.14115 3.49422 3.70433 3.75255 3.79374 3.99535 4.01725 4.05107 4.33272 4.40521 4.55342 4.58608 4.63222 4.66078 4.74666 4.77176 4.87852 4.91721 4.98296 5.09949 5.16778 5.19245 5.22321 5.31498 5.38387 5.52818 5.65204 5.86754 5.93009 6.06062 6.29040 6.49292 6.66259 6.89083 6.95408 7.27830 7.41692 8.32092 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.002556 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.582837 B =10950.748563 C =11496.291991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 C -0.162 4.162 4 N -0.276 5.276 5 C -0.004 4.004 6 C -0.055 4.055 7 C 0.213 3.787 8 N -0.709 5.709 9 C 0.565 3.435 10 O -0.583 6.583 11 C -0.137 4.137 12 C -0.199 4.199 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.496 4.496 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.128 4.128 25 N -0.294 5.294 26 N -0.111 5.111 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.229 0.771 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.287 0.713 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 10.464 -22.525 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.070 5.070 5 C -0.157 4.157 6 C -0.194 4.194 7 C 0.088 3.912 8 N -0.362 5.362 9 C 0.355 3.645 10 O -0.465 6.465 11 C -0.140 4.140 12 C -0.218 4.218 13 C -0.114 4.114 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.804 3.196 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.149 4.149 25 N -0.161 5.161 26 N -0.089 5.089 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.246 0.754 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.020 9.319 -23.003 24.901 hybrid contribution 0.022 0.542 1.253 1.366 sum -1.998 9.861 -21.750 23.964 Atomic orbital electron populations 1.22247 0.91249 1.03188 1.05348 1.22208 0.96744 0.94794 0.83526 1.22259 1.02180 0.91533 1.06027 1.48062 1.40503 1.07483 1.10964 1.23820 1.04397 1.02977 0.84523 1.21823 1.08882 0.91190 0.97513 1.19303 0.88358 1.01874 0.81647 1.45748 1.17474 1.68265 1.04723 1.18653 0.87266 0.76264 0.82346 1.90677 1.32721 1.49820 1.73253 1.19744 0.94423 1.06089 0.93747 1.20784 0.92917 1.09436 0.98705 1.20897 0.98218 0.98948 0.93312 1.21403 0.98911 1.08397 0.94945 1.17954 0.91797 0.89507 0.94231 1.19855 0.94485 1.46300 0.91922 0.89711 1.26878 0.94593 0.91687 1.05476 1.69892 1.02457 1.32106 1.40690 0.85186 0.78581 0.79826 0.76041 1.18280 1.19696 1.17722 1.21450 0.99757 1.01792 0.91870 1.75074 1.17223 1.26085 0.97681 1.78250 1.17270 0.97999 1.15431 0.91247 0.86877 0.93034 0.86229 0.86884 0.90170 0.91813 0.75421 0.88130 0.91720 0.75416 0.85378 0.84583 0.87280 0.90264 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.52 71.98 0.69 -0.31 16 2 C 0.13 1.01 3.85 44.99 0.17 1.18 16 3 C -0.16 -0.45 8.84 71.98 0.64 0.19 16 4 N -0.28 -4.74 3.25 -327.17 -1.06 -5.80 16 5 C 0.00 -0.07 10.62 83.49 0.89 0.82 16 6 C -0.06 -1.38 6.62 41.60 0.28 -1.11 16 7 C 0.21 6.11 6.23 85.64 0.53 6.65 16 8 N -0.71 -23.76 5.50 -469.66 -2.58 -26.34 16 9 C 0.56 25.25 7.77 86.80 0.67 25.92 16 10 O -0.58 -30.32 16.33 -3.86 -0.06 -30.38 16 11 C -0.14 -6.60 5.87 -20.13 -0.12 -6.72 16 12 C -0.20 -8.09 9.55 22.70 0.22 -7.87 16 13 C -0.10 -3.90 10.01 22.18 0.22 -3.67 16 14 C -0.22 -10.28 9.78 22.77 0.22 -10.05 16 15 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 16 C -0.50 -27.22 9.05 23.47 0.21 -27.00 16 17 H 0.08 4.37 7.90 -2.91 -0.02 4.34 16 18 C 0.03 1.51 5.14 85.25 0.44 1.94 16 19 N -0.83 -46.66 10.97 21.82 0.24 -46.42 16 20 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 24 C -0.13 -7.20 8.23 23.01 0.19 -7.01 16 25 N -0.29 -8.91 12.41 -48.59 -0.60 -9.51 16 26 N -0.11 -2.88 13.17 37.02 0.49 -2.39 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 32 H 0.08 0.13 7.18 -2.39 -0.02 0.12 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.23 1.91 7.31 -2.91 -0.02 1.89 16 35 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.41 12.12 6.48 -92.71 -0.60 11.52 16 38 H 0.13 4.15 6.38 -2.91 -0.02 4.13 16 39 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 42 H 0.10 6.28 5.77 -2.91 -0.02 6.27 16 Total: -1.00 -76.88 359.75 4.03 -72.85 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.45 Total: 29.59 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 5.13 Total: -23.47 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.52 Total: -90.47 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.06 Total: -30.38 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -76.88 4.03 -72.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552205991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.250 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds