Wall clock time and date at job start Tue Mar 31 2020 10:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 N 1.46499 * 109.46937 * 120.00211 * 2 1 3 5 5 C 1.35845 * 126.06020 * 274.99153 * 4 2 1 6 6 C 1.35728 * 107.56152 * 180.02562 * 5 4 2 7 7 N 1.40838 * 126.07524 * 179.97438 * 6 5 4 8 8 C 1.34769 * 120.00349 * 180.27810 * 7 6 5 9 9 O 1.21607 * 120.00103 * 359.73078 * 8 7 6 10 10 N 1.34777 * 120.00394 * 179.72637 * 8 7 6 11 11 C 1.39941 * 120.00099 * 174.84263 * 10 8 7 12 12 C 1.39294 * 119.94650 * 145.60743 * 11 10 8 13 13 C 1.38491 * 120.43002 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32006 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.88151 * 0.02562 * 14 13 12 16 16 C 1.41408 * 120.20442 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00439 * 25.23862 * 16 15 14 18 18 C 1.39937 * 119.99796 * 205.23920 * 16 15 14 19 19 N 1.30835 * 120.00093 * 16.70303 * 18 16 15 20 20 Si 1.86807 * 119.99830 * 196.70599 * 18 16 15 21 21 H 1.48499 * 109.46940 * 89.99665 * 20 18 16 22 22 H 1.48500 * 109.46600 * 209.99902 * 20 18 16 23 23 H 1.48497 * 109.46893 * 329.99551 * 20 18 16 24 24 C 1.38232 * 119.95116 * 325.33022 * 11 10 8 25 25 C 1.40228 * 107.85348 * 0.23378 * 6 5 4 26 26 N 1.30843 * 108.34145 * 359.61274 * 25 6 5 27 27 H 1.09009 * 109.46656 * 299.99764 * 1 2 3 28 28 H 1.08994 * 109.47123 * 59.99476 * 1 2 3 29 29 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46537 * 239.99733 * 2 1 3 31 31 H 1.09005 * 109.46967 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47040 * 300.00167 * 3 2 1 33 33 H 1.09003 * 109.46765 * 60.00435 * 3 2 1 34 34 H 1.08001 * 126.21432 * 0.06584 * 5 4 2 35 35 H 0.97009 * 119.99841 * 0.02562 * 7 6 5 36 36 H 0.97003 * 119.99584 * 354.84207 * 10 8 7 37 37 H 1.07997 * 119.78463 * 359.95848 * 12 11 10 38 38 H 1.07998 * 119.83861 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.05493 * 179.97438 * 14 13 12 40 40 H 0.96997 * 119.99555 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.15903 * 0.02562 * 24 11 10 42 42 H 1.08000 * 125.83342 * 179.76766 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1948 -0.1361 2.4237 6 6 2.6596 -1.1081 3.2491 7 7 2.9758 -0.9565 4.6132 8 6 3.4361 -2.0081 5.3192 9 8 3.5738 -3.0893 4.7797 10 7 3.7440 -1.8617 6.6231 11 6 4.1185 -2.9756 7.3830 12 6 5.0660 -2.8402 8.3950 13 6 5.4437 -3.9356 9.1535 14 6 4.8855 -5.1716 8.9154 15 6 3.9269 -5.3235 7.8962 16 6 3.3497 -6.5898 7.6455 17 1 3.3045 -7.3281 8.4325 18 6 2.8369 -6.8864 6.3777 19 7 3.1702 -6.1503 5.3487 20 14 1.6766 -8.3333 6.1545 21 1 0.2757 -7.8777 6.3415 22 1 1.8378 -8.8906 4.7875 23 1 1.9942 -9.3816 7.1571 24 6 3.5434 -4.2073 7.1320 25 6 2.7749 -2.2886 2.5011 26 7 2.3868 -2.0397 1.2766 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.9998 0.8912 2.6937 35 1 2.8658 -0.0941 5.0436 36 1 3.7059 -0.9842 7.0348 37 1 5.5093 -1.8747 8.5892 38 1 6.1795 -3.8199 9.9355 39 1 5.1835 -6.0231 9.5093 40 1 2.8144 -6.3557 4.4700 41 1 2.8056 -4.3125 6.3502 42 1 3.1220 -3.2413 2.8729 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576647219.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:07 Heat of formation + Delta-G solvation = 58.091100 kcal Electronic energy + Delta-G solvation = -25441.773521 eV Core-core repulsion = 21808.862617 eV Total energy + Delta-G solvation = -3632.910904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.37296 -41.10693 -39.04549 -36.83115 -35.95715 -35.36666 -34.86638 -31.40812 -31.15071 -30.45993 -29.03347 -28.14153 -27.13072 -24.21802 -23.69742 -22.86621 -21.94866 -21.42842 -20.85392 -19.52674 -18.79752 -18.42610 -17.44625 -16.68166 -16.62554 -16.35022 -16.15514 -15.91471 -15.61148 -15.32674 -14.85297 -14.80965 -14.53437 -14.08931 -13.82470 -13.81154 -13.42447 -13.14335 -13.03465 -12.97826 -12.82647 -12.60456 -12.38280 -12.20394 -12.16642 -11.83922 -11.70271 -11.62530 -11.49728 -11.10057 -10.78866 -10.66706 -10.32205 -9.23093 -8.83426 -8.55585 -8.34413 -6.25312 0.83658 0.98632 1.17480 1.36227 1.41454 1.49872 1.51751 1.71346 1.87361 2.23260 2.49232 2.87352 3.37240 3.62463 3.83886 3.91453 3.97016 4.13551 4.16362 4.52651 4.54572 4.58389 4.69286 4.77609 4.79524 4.85349 4.94456 4.97041 5.14929 5.18092 5.22481 5.28277 5.32340 5.34937 5.48254 5.85077 5.87018 5.93727 6.07769 6.17364 6.23216 6.31843 6.50794 6.71930 6.76606 7.04145 7.13395 7.21303 7.75290 8.42680 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.003683 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.885474 B = 7600.603646 C = 9276.556956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 C -0.156 4.156 4 N -0.363 5.363 5 C 0.038 3.962 6 C 0.005 3.995 7 N -0.641 5.641 8 C 0.681 3.319 9 O -0.571 6.571 10 N -0.667 5.667 11 C 0.162 3.838 12 C -0.257 4.257 13 C -0.079 4.079 14 C -0.259 4.259 15 C 0.085 3.915 16 C -0.503 4.503 17 H 0.074 0.926 18 C 0.030 3.970 19 N -0.791 5.791 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.254 1.254 24 C -0.186 4.186 25 C 0.024 3.976 26 N -0.321 5.321 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.222 0.778 35 H 0.423 0.577 36 H 0.417 0.583 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.279 0.721 41 H 0.110 0.890 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 20.280 -8.721 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 C -0.214 4.214 4 N -0.149 5.149 5 C -0.111 4.111 6 C -0.101 4.101 7 N -0.292 5.292 8 C 0.382 3.618 9 O -0.445 6.445 10 N -0.316 5.316 11 C 0.069 3.931 12 C -0.279 4.279 13 C -0.097 4.097 14 C -0.279 4.279 15 C 0.082 3.918 16 C -0.533 4.533 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.415 5.415 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.178 1.178 24 C -0.207 4.207 25 C -0.161 4.161 26 N -0.144 5.144 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.239 0.761 35 H 0.261 0.739 36 H 0.254 0.746 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.504 18.934 -10.749 22.457 hybrid contribution -0.221 -0.207 1.073 1.115 sum -5.725 18.728 -9.676 21.843 Atomic orbital electron populations 1.22229 0.92710 1.02236 1.04589 1.21631 0.95504 0.93983 0.84022 1.22187 1.01826 0.91877 1.05478 1.49020 1.50461 1.06198 1.09199 1.22255 1.04267 0.99915 0.84648 1.17634 1.12495 0.94741 0.85192 1.41506 1.68092 1.12493 1.07120 1.16230 0.79340 0.84371 0.81907 1.91052 1.57965 1.26259 1.69239 1.42190 1.71141 1.10568 1.07674 1.17470 0.96000 0.86569 0.93110 1.20440 1.04656 0.99661 1.03096 1.20709 0.98497 0.92041 0.98495 1.21176 1.03762 0.97546 1.05418 1.17878 0.89815 0.93251 0.90841 1.19745 1.36695 0.99689 0.97151 0.90781 1.26752 0.96526 1.00368 0.95070 1.70040 1.34429 1.36782 1.00202 0.85360 0.78674 0.78284 0.78324 1.19124 1.19875 1.17766 1.21258 1.03990 0.91417 1.04086 1.24253 1.01097 1.00394 0.90399 1.77310 1.21452 0.95628 1.20032 0.91293 0.87725 0.94169 0.88633 0.92277 0.87613 0.90026 0.76115 0.73877 0.74598 0.85327 0.85330 0.88654 0.91091 0.87233 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.52 71.98 0.69 -1.32 16 2 C 0.15 2.25 3.94 44.99 0.18 2.43 16 3 C -0.16 -1.21 8.84 71.98 0.64 -0.57 16 4 N -0.36 -8.88 3.55 -326.42 -1.16 -10.04 16 5 C 0.04 0.82 10.65 83.49 0.89 1.71 16 6 C 0.00 0.14 6.90 37.59 0.26 0.40 16 7 N -0.64 -18.29 5.48 -317.72 -1.74 -20.03 16 8 C 0.68 27.07 8.26 179.06 1.48 28.55 16 9 O -0.57 -29.29 11.26 -4.05 -0.05 -29.33 16 10 N -0.67 -24.32 5.34 -317.32 -1.70 -26.02 16 11 C 0.16 7.57 6.25 38.10 0.24 7.80 16 12 C -0.26 -10.77 9.97 22.58 0.23 -10.54 16 13 C -0.08 -3.43 10.02 22.20 0.22 -3.21 16 14 C -0.26 -13.22 9.79 22.75 0.22 -13.00 16 15 C 0.09 4.90 5.56 -21.31 -0.12 4.78 16 16 C -0.50 -29.22 9.05 23.46 0.21 -29.01 16 17 H 0.07 4.13 7.90 -2.91 -0.02 4.10 16 18 C 0.03 1.66 5.16 85.25 0.44 2.10 16 19 N -0.79 -46.60 10.95 21.83 0.24 -46.37 16 20 Si 0.97 42.48 29.59 68.60 2.03 44.51 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 24 C -0.19 -10.42 7.28 22.85 0.17 -10.25 16 25 C 0.02 0.96 10.84 85.32 0.92 1.88 16 26 N -0.32 -11.37 12.57 -56.78 -0.71 -12.08 16 27 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 32 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.41 7.17 -2.39 -0.02 0.39 16 34 H 0.22 2.27 7.29 -2.91 -0.02 2.25 16 35 H 0.42 7.57 8.85 -92.70 -0.82 6.75 16 36 H 0.42 10.64 8.84 -92.71 -0.82 9.82 16 37 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.28 15.58 8.30 -92.71 -0.77 14.81 16 41 H 0.11 6.74 4.63 -2.91 -0.01 6.73 16 42 H 0.17 8.15 5.91 -2.91 -0.02 8.14 16 Total: -1.00 -81.04 353.99 3.01 -78.03 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.57 Total: 39.57 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 6.66 Total: -18.25 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -5.07 Total: -114.53 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -81.04 3.01 -78.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576647219.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.120 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds