Wall clock time and date at job start Tue Mar 31 2020 10:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00455 * 2 1 4 4 C 1.52994 * 109.47524 * 125.00203 * 3 2 1 5 5 S 1.81394 * 109.47273 * 180.02562 * 4 3 2 6 6 C 1.81400 * 103.00101 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47134 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46845 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99942 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99979 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00404 * 179.97438 * 9 8 7 12 12 C 1.47026 * 125.64519 * 0.02976 * 11 9 8 13 13 C 1.54326 * 107.26969 * 181.02142 * 12 11 9 14 14 C 1.55159 * 102.94418 * 22.18985 * 13 12 11 15 15 O 1.42896 * 111.00598 * 82.57223 * 14 13 12 16 16 C 1.50702 * 111.00452 * 206.38939 * 14 13 12 17 17 H 1.07999 * 120.00192 * 118.09199 * 16 14 13 18 18 C 1.37875 * 119.99406 * 298.09138 * 16 14 13 19 19 N 1.31516 * 119.99481 * 187.05582 * 18 16 14 20 20 Si 1.86792 * 120.00596 * 7.04959 * 18 16 14 21 21 H 1.48504 * 109.46924 * 84.72016 * 20 18 16 22 22 H 1.48498 * 109.47682 * 204.71650 * 20 18 16 23 23 H 1.48505 * 109.47207 * 324.72281 * 20 18 16 24 24 C 1.47423 * 125.65072 * 179.71516 * 11 9 8 25 25 H 1.08008 * 119.99724 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00618 * 180.02562 * 1 2 3 27 27 H 1.08008 * 119.99724 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47063 * 4.99864 * 3 2 1 29 29 H 1.09004 * 109.46712 * 245.00411 * 3 2 1 30 30 H 1.09002 * 109.46792 * 299.99752 * 4 3 2 31 31 H 1.09003 * 109.47227 * 59.99762 * 4 3 2 32 32 H 1.09000 * 109.47108 * 300.00187 * 6 5 4 33 33 H 1.09004 * 109.47350 * 60.00019 * 6 5 4 34 34 H 1.09006 * 109.46872 * 299.99817 * 7 6 5 35 35 H 1.08999 * 109.47297 * 60.00171 * 7 6 5 36 36 H 0.96996 * 120.00621 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.88086 * 300.43183 * 12 11 9 38 38 H 1.08996 * 109.88709 * 61.60105 * 12 11 9 39 39 H 1.09001 * 110.72095 * 140.55488 * 13 12 11 40 40 H 1.09001 * 110.71760 * 263.65009 * 13 12 11 41 41 H 0.96700 * 114.00147 * 180.02562 * 15 14 13 42 42 H 0.96999 * 120.00273 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.36559 * 274.74993 * 24 11 9 44 44 H 1.08998 * 110.36359 * 37.07038 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1815 5 16 3.9416 2.9042 1.1819 6 6 5.0232 2.7510 2.6301 7 6 5.8681 4.0186 2.7720 8 7 6.7420 3.8945 3.9413 9 6 7.5819 4.8979 4.2643 10 8 7.6146 5.9059 3.5851 11 7 8.3855 4.7841 5.3403 12 6 8.4485 3.6261 6.2440 13 6 9.4854 3.9551 7.3387 14 6 9.5360 5.5056 7.3147 15 8 8.4686 6.0650 8.0825 16 6 10.8700 6.0101 7.8017 17 1 11.5037 6.5843 7.1421 18 6 11.2812 5.7386 9.0894 19 7 12.3772 6.2925 9.5602 20 14 10.2817 4.5842 10.1654 21 1 10.6793 3.1806 9.8880 22 1 10.5343 4.8968 11.5949 23 1 8.8370 4.7574 9.8685 24 6 9.3517 5.7973 5.8022 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9315 30 1 2.4773 1.2356 2.1129 31 1 3.7400 0.5064 1.0920 32 1 4.4154 2.6178 3.5250 33 1 5.6787 1.8892 2.5045 34 1 6.4759 4.1522 1.8771 35 1 5.2124 4.8802 2.8979 36 1 6.7163 3.0904 4.4830 37 1 7.4719 3.4563 6.6975 38 1 8.7617 2.7407 5.6909 39 1 9.1475 3.5953 8.3105 40 1 10.4578 3.5308 7.0887 41 1 8.4588 7.0318 8.0966 42 1 12.6664 6.1019 10.4662 43 1 10.2987 5.6870 5.2740 44 1 8.9492 6.7996 5.6559 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596717408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:18 Heat of formation + Delta-G solvation = -53.687962 kcal Electronic energy + Delta-G solvation = -23329.415631 eV Core-core repulsion = 19794.808824 eV Total energy + Delta-G solvation = -3534.606807 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.93822 -37.81818 -36.17991 -35.24303 -34.51640 -32.45683 -31.14935 -30.93097 -29.82572 -28.27743 -25.40119 -24.41094 -23.00196 -22.38677 -20.33375 -20.07175 -19.71791 -17.99921 -17.27372 -16.50357 -16.22834 -16.09164 -15.87607 -15.23074 -14.97968 -14.82676 -14.78922 -14.36978 -13.89854 -13.57216 -13.43194 -13.23710 -12.93980 -12.74249 -12.59473 -12.39530 -12.18522 -11.95365 -11.69491 -11.64408 -11.39918 -11.29313 -11.12920 -10.62389 -10.39615 -10.38117 -10.09497 -9.89952 -9.81925 -9.08151 -9.07368 -8.79982 -8.57276 -8.06577 -7.99765 -6.26133 -4.37621 1.06431 1.77875 2.14143 2.97685 3.24210 3.37255 3.48618 3.52902 4.24739 4.29574 4.36478 4.40000 4.47353 4.54158 4.56164 4.75677 5.00886 5.03120 5.04902 5.12421 5.24510 5.32559 5.41067 5.50064 5.51596 5.57295 5.64594 5.72690 5.82758 6.09212 6.10140 6.22519 6.43890 6.48093 6.54159 6.58958 6.62318 7.09195 7.27553 7.46086 8.14810 8.24594 8.71581 8.85096 8.90210 9.36932 10.84336 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.002110 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.542589 B =13268.648351 C =13828.460572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 C -0.078 4.078 4 C -0.083 4.083 5 S -0.239 6.239 6 C -0.103 4.103 7 C 0.158 3.842 8 N -0.749 5.749 9 C 0.721 3.279 10 O -0.595 6.595 11 N -0.626 5.626 12 C 0.105 3.895 13 C -0.127 4.127 14 C 0.217 3.783 15 O -0.572 6.572 16 C -0.553 4.553 17 H 0.080 0.920 18 C 0.090 3.910 19 N -0.884 5.884 20 Si 0.876 3.124 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.232 1.232 24 C 0.112 3.888 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.395 0.605 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.368 0.632 42 H 0.267 0.733 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.209 -13.971 -14.470 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.117 4.117 4 C -0.232 4.232 5 S -0.013 6.013 6 C -0.251 4.251 7 C 0.033 3.967 8 N -0.407 5.407 9 C 0.423 3.577 10 O -0.474 6.474 11 N -0.363 5.363 12 C -0.019 4.019 13 C -0.165 4.165 14 C 0.176 3.824 15 O -0.379 6.379 16 C -0.590 4.590 17 H 0.098 0.902 18 C -0.115 4.115 19 N -0.520 5.520 20 Si 0.704 3.296 21 H -0.209 1.209 22 H -0.226 1.226 23 H -0.156 1.156 24 C -0.010 4.010 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.228 0.772 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.215 0.785 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.317 -12.953 -15.508 27.954 hybrid contribution -0.056 -1.639 1.751 2.399 sum -19.373 -14.592 -13.757 27.884 Atomic orbital electron populations 1.23926 0.95903 1.02147 1.00441 1.22863 0.95999 0.97963 1.00466 1.20472 0.97504 0.96250 0.97430 1.23360 1.00333 0.96964 1.02531 1.86993 1.49503 1.26371 1.38399 1.23532 1.00359 1.02155 0.99091 1.20686 0.91871 0.95422 0.88752 1.45029 1.43311 1.20452 1.31875 1.15384 0.78709 0.83077 0.80545 1.90903 1.72407 1.30362 1.53698 1.47687 1.41023 1.20682 1.26913 1.21988 0.99976 0.88189 0.91707 1.22979 0.98375 0.97963 0.97163 1.20124 0.87200 0.89571 0.85488 1.86423 1.53124 1.24547 1.73793 1.21141 1.01436 1.37195 0.99272 0.90176 1.24939 0.94335 0.94831 0.97443 1.69933 1.23378 1.41741 1.16932 0.87060 0.83610 0.80413 0.78548 1.20908 1.22644 1.15562 1.22937 0.90373 0.90980 0.96733 0.88368 0.88262 0.87147 0.90387 0.89880 0.89850 0.89816 0.89314 0.89320 0.90731 0.90733 0.77161 0.92371 0.92607 0.90782 0.89237 0.78518 0.92283 0.91126 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 14.32 29.02 0.42 -0.51 16 2 C -0.15 -0.80 9.52 -36.02 -0.34 -1.14 16 3 C -0.08 -0.45 5.66 -27.89 -0.16 -0.61 16 4 C -0.08 -0.52 5.92 37.15 0.22 -0.30 16 5 S -0.24 -2.11 21.74 -107.50 -2.34 -4.45 16 6 C -0.10 -0.85 6.05 37.16 0.22 -0.63 16 7 C 0.16 1.85 5.68 -4.04 -0.02 1.82 16 8 N -0.75 -10.00 5.52 -65.22 -0.36 -10.36 16 9 C 0.72 13.15 8.49 -86.92 -0.74 12.41 16 10 O -0.59 -13.04 16.60 5.28 0.09 -12.96 16 11 N -0.63 -11.53 3.32 -176.09 -0.59 -12.12 16 12 C 0.10 1.69 6.15 -3.06 -0.02 1.67 16 13 C -0.13 -2.48 4.62 -24.89 -0.12 -2.60 16 14 C 0.22 4.77 0.71 -89.50 -0.06 4.71 16 15 O -0.57 -12.52 10.84 -35.23 -0.38 -12.91 16 16 C -0.55 -14.44 8.84 -34.44 -0.30 -14.74 16 17 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 18 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 19 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16 20 Si 0.88 20.63 23.98 -169.99 -4.08 16.56 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.23 -5.37 5.43 56.52 0.31 -5.07 16 24 C 0.11 2.32 6.10 -2.41 -0.01 2.30 16 25 H 0.10 0.46 7.84 -52.48 -0.41 0.05 16 26 H 0.10 0.40 8.06 -52.49 -0.42 -0.03 16 27 H 0.11 0.49 8.06 -52.48 -0.42 0.06 16 28 H 0.08 0.48 7.79 -51.93 -0.40 0.07 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.39 4.25 7.46 -40.82 -0.30 3.95 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.48 4.80 -51.93 -0.25 1.23 16 40 H 0.09 1.74 8.04 -51.93 -0.42 1.32 16 41 H 0.37 7.21 9.06 45.56 0.41 7.62 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 44 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -32.20 369.93 -8.83 -41.03 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.51 Total: 9.80 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.01 Total: 4.73 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.17 Total: -47.38 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.29 Total: -25.86 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.08 Total: 16.56 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.34 Total: -4.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.20 -8.83 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596717408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.660 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds