Wall clock time and date at job start Tue Mar 31 2020 10:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00455 * 2 1 4 4 C 1.52994 * 109.47524 * 125.00203 * 3 2 1 5 5 S 1.81394 * 109.47273 * 180.02562 * 4 3 2 6 6 C 1.81400 * 103.00101 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47134 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46845 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99942 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99979 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00404 * 179.97438 * 9 8 7 12 12 C 1.47026 * 125.64519 * 0.02976 * 11 9 8 13 13 C 1.54326 * 107.26969 * 181.02142 * 12 11 9 14 14 C 1.55159 * 102.94418 * 22.18985 * 13 12 11 15 15 O 1.42896 * 111.00598 * 82.57223 * 14 13 12 16 16 C 1.50702 * 111.00452 * 206.38939 * 14 13 12 17 17 H 1.07999 * 120.00192 * 118.09199 * 16 14 13 18 18 C 1.37875 * 119.99406 * 298.09138 * 16 14 13 19 19 N 1.31516 * 119.99481 * 187.05582 * 18 16 14 20 20 Si 1.86792 * 120.00596 * 7.04959 * 18 16 14 21 21 H 1.48504 * 109.46924 * 84.72016 * 20 18 16 22 22 H 1.48498 * 109.47682 * 204.71650 * 20 18 16 23 23 H 1.48505 * 109.47207 * 324.72281 * 20 18 16 24 24 C 1.47423 * 125.65072 * 179.71516 * 11 9 8 25 25 H 1.08008 * 119.99724 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00618 * 180.02562 * 1 2 3 27 27 H 1.08008 * 119.99724 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47063 * 4.99864 * 3 2 1 29 29 H 1.09004 * 109.46712 * 245.00411 * 3 2 1 30 30 H 1.09002 * 109.46792 * 299.99752 * 4 3 2 31 31 H 1.09003 * 109.47227 * 59.99762 * 4 3 2 32 32 H 1.09000 * 109.47108 * 300.00187 * 6 5 4 33 33 H 1.09004 * 109.47350 * 60.00019 * 6 5 4 34 34 H 1.09006 * 109.46872 * 299.99817 * 7 6 5 35 35 H 1.08999 * 109.47297 * 60.00171 * 7 6 5 36 36 H 0.96996 * 120.00621 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.88086 * 300.43183 * 12 11 9 38 38 H 1.08996 * 109.88709 * 61.60105 * 12 11 9 39 39 H 1.09001 * 110.72095 * 140.55488 * 13 12 11 40 40 H 1.09001 * 110.71760 * 263.65009 * 13 12 11 41 41 H 0.96700 * 114.00147 * 180.02562 * 15 14 13 42 42 H 0.96999 * 120.00273 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.36559 * 274.74993 * 24 11 9 44 44 H 1.08998 * 110.36359 * 37.07038 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1815 5 16 3.9416 2.9042 1.1819 6 6 5.0232 2.7510 2.6301 7 6 5.8681 4.0186 2.7720 8 7 6.7420 3.8945 3.9413 9 6 7.5819 4.8979 4.2643 10 8 7.6146 5.9059 3.5851 11 7 8.3855 4.7841 5.3403 12 6 8.4485 3.6261 6.2440 13 6 9.4854 3.9551 7.3387 14 6 9.5360 5.5056 7.3147 15 8 8.4686 6.0650 8.0825 16 6 10.8700 6.0101 7.8017 17 1 11.5037 6.5843 7.1421 18 6 11.2812 5.7386 9.0894 19 7 12.3772 6.2925 9.5602 20 14 10.2817 4.5842 10.1654 21 1 10.6793 3.1806 9.8880 22 1 10.5343 4.8968 11.5949 23 1 8.8370 4.7574 9.8685 24 6 9.3517 5.7973 5.8022 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9315 30 1 2.4773 1.2356 2.1129 31 1 3.7400 0.5064 1.0920 32 1 4.4154 2.6178 3.5250 33 1 5.6787 1.8892 2.5045 34 1 6.4759 4.1522 1.8771 35 1 5.2124 4.8802 2.8979 36 1 6.7163 3.0904 4.4830 37 1 7.4719 3.4563 6.6975 38 1 8.7617 2.7407 5.6909 39 1 9.1475 3.5953 8.3105 40 1 10.4578 3.5308 7.0887 41 1 8.4588 7.0318 8.0966 42 1 12.6664 6.1019 10.4662 43 1 10.2987 5.6870 5.2740 44 1 8.9492 6.7996 5.6559 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596717408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:17 Heat of formation + Delta-G solvation = -77.199112 kcal Electronic energy + Delta-G solvation = -23330.435151 eV Core-core repulsion = 19794.808824 eV Total energy + Delta-G solvation = -3535.626327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37517 -39.37630 -36.59626 -36.42262 -36.15353 -34.50063 -32.46069 -31.37871 -31.09851 -29.88400 -27.10905 -25.13680 -24.21924 -23.46131 -21.66475 -21.23119 -20.70082 -19.60054 -18.90959 -17.53302 -17.21365 -17.06862 -16.81066 -16.58666 -16.45684 -16.12924 -15.76925 -15.36708 -15.13794 -14.94774 -14.71591 -14.40096 -14.21986 -13.88765 -13.75400 -13.38523 -13.23644 -13.14682 -13.03940 -12.86951 -12.76056 -12.37936 -12.20761 -12.16374 -11.85337 -11.80136 -11.37840 -10.99751 -10.96258 -10.75782 -10.42458 -10.29856 -10.27163 -9.44736 -8.72622 -8.36004 -6.51432 0.42034 1.36786 1.38162 1.47435 1.56154 1.66485 1.72316 2.07092 2.39843 2.98929 3.04171 3.54418 3.61233 3.81153 3.86124 3.87782 4.03216 4.03447 4.15207 4.20774 4.34633 4.39717 4.43966 4.57209 4.57917 4.67589 4.76624 4.80261 4.82356 4.94408 5.02804 5.08374 5.11290 5.12890 5.35184 5.42335 5.51009 5.74071 5.85950 6.04028 6.07536 6.59775 6.93712 7.12044 7.29046 7.47802 8.78146 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.002110 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.542589 B =13268.648351 C =13828.460572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.077 4.077 4 C -0.068 4.068 5 S -0.286 6.286 6 C -0.085 4.085 7 C 0.160 3.840 8 N -0.727 5.727 9 C 0.717 3.283 10 O -0.639 6.639 11 N -0.629 5.629 12 C 0.109 3.891 13 C -0.130 4.130 14 C 0.215 3.785 15 O -0.574 6.574 16 C -0.554 4.554 17 H 0.039 0.961 18 C 0.038 3.962 19 N -0.934 5.934 20 Si 0.940 3.060 21 H -0.262 1.262 22 H -0.309 1.309 23 H -0.221 1.221 24 C 0.120 3.880 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.375 0.625 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 -17.308 -14.407 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.115 4.115 4 C -0.216 4.216 5 S -0.060 6.060 6 C -0.234 4.234 7 C 0.035 3.965 8 N -0.385 5.385 9 C 0.418 3.582 10 O -0.521 6.521 11 N -0.365 5.365 12 C -0.013 4.013 13 C -0.167 4.167 14 C 0.175 3.825 15 O -0.381 6.381 16 C -0.592 4.592 17 H 0.057 0.943 18 C -0.162 4.162 19 N -0.572 5.572 20 Si 0.765 3.235 21 H -0.187 1.187 22 H -0.237 1.237 23 H -0.143 1.143 24 C -0.004 4.004 25 H 0.115 0.885 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.249 0.751 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.223 0.777 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.716 -16.346 -15.460 31.269 hybrid contribution 0.679 -0.512 1.636 1.844 sum -21.038 -16.858 -13.823 30.296 Atomic orbital electron populations 1.24076 0.96026 1.02669 0.99985 1.22908 0.96096 0.97914 1.00845 1.20449 0.97342 0.96511 0.97222 1.23374 1.00151 0.95178 1.02940 1.87231 1.50483 1.29131 1.39139 1.23379 1.00069 1.00643 0.99267 1.20698 0.91463 0.96926 0.87439 1.44822 1.41847 1.19708 1.32091 1.15564 0.79085 0.83426 0.80084 1.90875 1.73721 1.32475 1.55070 1.47601 1.40665 1.20810 1.27474 1.22122 1.00171 0.88269 0.90714 1.22941 0.99752 0.95238 0.98816 1.20001 0.85040 0.91581 0.85915 1.86379 1.52497 1.25409 1.73783 1.21353 1.02858 1.36260 0.98714 0.94311 1.25768 0.95255 0.96316 0.98902 1.70071 1.25652 1.43926 1.17530 0.86067 0.82470 0.79164 0.75782 1.18740 1.23743 1.14332 1.22602 0.90594 0.91220 0.96015 0.88454 0.87263 0.86127 0.91045 0.90221 0.89136 0.88547 0.87727 0.87427 0.92047 0.92306 0.75100 0.90014 0.88713 0.90417 0.89367 0.77688 0.92260 0.92300 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 14.32 67.79 0.97 -0.58 16 2 C -0.16 -1.32 9.52 25.65 0.24 -1.08 16 3 C -0.08 -0.76 5.66 29.85 0.17 -0.60 16 4 C -0.07 -0.68 5.92 71.98 0.43 -0.26 16 5 S -0.29 -4.60 21.74 -56.49 -1.23 -5.82 16 6 C -0.09 -1.16 6.05 71.98 0.44 -0.72 16 7 C 0.16 3.45 5.68 86.38 0.49 3.95 16 8 N -0.73 -17.35 5.52 -478.52 -2.64 -19.99 16 9 C 0.72 25.00 8.49 179.05 1.52 26.52 16 10 O -0.64 -28.06 16.60 -4.01 -0.07 -28.13 16 11 N -0.63 -21.89 3.32 -829.29 -2.76 -24.65 16 12 C 0.11 3.06 6.15 86.73 0.53 3.60 16 13 C -0.13 -4.69 4.62 31.78 0.15 -4.55 16 14 C 0.22 9.31 0.71 -10.07 -0.01 9.30 16 15 O -0.57 -24.18 10.84 -148.98 -1.62 -25.80 16 16 C -0.55 -29.55 8.84 25.60 0.23 -29.32 16 17 H 0.04 2.32 8.03 -2.91 -0.02 2.30 16 18 C 0.04 2.10 5.47 84.65 0.46 2.56 16 19 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 20 Si 0.94 41.89 23.98 68.60 1.65 43.54 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.31 -14.23 7.11 99.48 0.71 -13.53 16 23 H -0.22 -9.35 5.43 99.48 0.54 -8.80 16 24 C 0.12 4.94 6.10 86.93 0.53 5.47 16 25 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 26 H 0.11 0.65 8.06 -2.91 -0.02 0.63 16 27 H 0.12 0.76 8.06 -2.91 -0.02 0.73 16 28 H 0.07 0.80 7.79 -2.39 -0.02 0.78 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.41 7.02 7.46 -92.71 -0.69 6.33 16 37 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 2.77 4.80 -2.39 -0.01 2.76 16 40 H 0.09 3.20 8.04 -2.39 -0.02 3.18 16 41 H 0.37 14.50 9.06 -74.06 -0.67 13.83 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.06 2.54 8.04 -2.38 -0.02 2.52 16 44 H 0.05 2.39 8.03 -2.39 -0.02 2.37 16 Total: -1.00 -71.64 369.93 -0.75 -72.39 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.53 Total: 29.52 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.15 Total: 14.29 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.10 Total: -99.99 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -1.68 Total: -53.93 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.65 Total: 43.54 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.23 Total: -5.82 kcal Total: -71.64 -0.75 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596717408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.808 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds