Wall clock time and date at job start Tue Mar 31 2020 10:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47207 * 2 1 4 4 H 1.08996 * 109.47824 * 54.99704 * 3 2 1 5 5 C 1.50703 * 109.46987 * 175.00397 * 3 2 1 6 6 H 1.07991 * 120.00014 * 120.00110 * 5 3 2 7 7 C 1.37880 * 119.99553 * 299.99512 * 5 3 2 8 8 N 1.31513 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46933 * 59.99580 * 9 7 5 11 11 H 1.48489 * 109.47398 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46959 * 300.00139 * 9 7 5 13 13 N 1.46500 * 109.46872 * 294.99642 * 3 2 1 14 14 C 1.34786 * 119.99837 * 85.00301 * 13 3 2 15 15 O 1.21588 * 119.99811 * 0.02562 * 14 13 3 16 16 C 1.47532 * 119.99807 * 179.97438 * 14 13 3 17 17 C 1.39927 * 120.61483 * 6.77825 * 16 14 13 18 18 C 1.38367 * 118.37850 * 180.24274 * 17 16 14 19 19 C 1.38454 * 119.53685 * 359.74423 * 18 17 16 20 20 N 1.31748 * 121.24020 * 359.97438 * 19 18 17 21 21 C 1.32636 * 121.75548 * 0.02728 * 20 19 18 22 22 C 1.48027 * 119.84010 * 179.97438 * 21 20 19 23 23 C 1.41045 * 126.27174 * 231.62089 * 22 21 20 24 24 N 1.30588 * 108.04460 * 179.73916 * 23 22 21 25 25 N 1.39994 * 108.59995 * 0.24245 * 24 23 22 26 26 C 1.46495 * 125.85023 * 180.02562 * 25 24 23 27 27 C 1.34595 * 108.30103 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.46946 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46677 * 300.00006 * 1 2 3 30 30 H 1.09002 * 109.46916 * 60.00218 * 1 2 3 31 31 H 1.09003 * 109.46781 * 239.99564 * 2 1 3 32 32 H 1.09002 * 109.46916 * 119.99782 * 2 1 3 33 33 H 0.97001 * 120.00124 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00510 * 264.99839 * 13 3 2 35 35 H 1.07997 * 120.81637 * 359.97438 * 17 16 14 36 36 H 1.07995 * 120.23242 * 179.72458 * 18 17 16 37 37 H 1.08004 * 119.37919 * 180.02562 * 19 18 17 38 38 H 1.08001 * 125.97683 * 0.02562 * 23 22 21 39 39 H 1.09003 * 109.46953 * 89.97601 * 26 25 24 40 40 H 1.08995 * 109.47166 * 209.97850 * 26 25 24 41 41 H 1.09005 * 109.47024 * 329.98024 * 26 25 24 42 42 H 1.07995 * 126.19715 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5420 1.4442 0.1237 6 1 4.1472 1.8887 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8810 1.3818 10 1 6.4996 2.2813 1.3820 11 1 6.3978 0.2176 2.6508 12 1 6.5975 0.1470 0.2349 13 7 1.6526 2.0973 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3411 2.6326 -0.4318 16 6 0.0452 3.3243 -2.6275 17 6 0.8687 3.2482 -3.7563 18 6 0.4603 3.8887 -4.9127 19 6 -0.7416 4.5760 -4.9243 20 7 -1.5069 4.6322 -3.8533 21 6 -1.1644 4.0368 -2.7186 22 6 -2.0563 4.1278 -1.5407 23 6 -1.6838 4.5298 -0.2411 24 7 -2.7467 4.4854 0.5163 25 7 -3.8294 4.0526 -0.2586 26 6 -5.2037 3.8689 0.2142 27 6 -3.3912 3.8342 -1.5123 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0619 2.9495 34 1 2.2720 2.1230 -1.9978 35 1 1.8024 2.7064 -3.7244 36 1 1.0748 3.8531 -5.8001 37 1 -1.0582 5.0747 -5.8285 38 1 -0.6938 4.8271 0.0718 39 1 -5.7590 4.7983 0.0871 40 1 -5.6833 3.0774 -0.3616 41 1 -5.1914 3.5944 1.2690 42 1 -3.9874 3.4941 -2.3461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597506485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:09 Heat of formation + Delta-G solvation = 63.837112 kcal Electronic energy + Delta-G solvation = -26263.971756 eV Core-core repulsion = 22631.310018 eV Total energy + Delta-G solvation = -3632.661738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23613 -41.12463 -39.87175 -36.90832 -34.69340 -34.17211 -33.66745 -32.93737 -32.24665 -30.29116 -28.94772 -27.52585 -25.67965 -24.77614 -24.27708 -22.34189 -21.78782 -21.42561 -21.03492 -19.31363 -18.36162 -17.70421 -17.47193 -16.90313 -16.59072 -16.33341 -16.24481 -15.88218 -15.47059 -15.05149 -14.89914 -14.63597 -14.55969 -14.07463 -13.84376 -13.60418 -13.49120 -13.44492 -13.26138 -13.16642 -12.98839 -12.87234 -12.64249 -12.17926 -12.05872 -11.70693 -11.58148 -11.05564 -10.88695 -10.83419 -10.52807 -10.49879 -10.26477 -10.05484 -9.50866 -8.93363 -8.14179 -6.31582 -0.25726 0.22475 1.05927 1.45632 1.47399 1.54968 1.74730 1.85820 2.23532 2.36422 2.63638 2.97985 3.15629 3.33552 3.74273 3.92983 3.93527 3.99648 4.07963 4.22284 4.35010 4.47325 4.48725 4.56628 4.61733 4.69117 4.72290 4.77422 4.87886 4.98878 5.07798 5.15720 5.20261 5.26768 5.44715 5.57446 5.62709 5.64915 5.73788 5.82179 5.96576 6.18551 6.20445 6.76382 6.79824 6.96345 7.05946 7.35729 7.62373 8.90757 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.004370 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.058018 B = 6405.085780 C = 7762.259525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C 0.284 3.716 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.700 5.700 14 C 0.541 3.459 15 O -0.553 6.553 16 C -0.193 4.193 17 C -0.045 4.045 18 C -0.171 4.171 19 C 0.121 3.879 20 N -0.502 5.502 21 C 0.248 3.752 22 C -0.214 4.214 23 C 0.121 3.879 24 N -0.345 5.345 25 N -0.379 5.379 26 C 0.095 3.905 27 C 0.095 3.905 28 H 0.040 0.960 29 H 0.021 0.979 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.399 0.601 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.156 0.844 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 6.172 -16.246 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.181 3.819 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.350 5.350 14 C 0.328 3.672 15 O -0.432 6.432 16 C -0.199 4.199 17 C -0.071 4.071 18 C -0.191 4.191 19 C -0.037 4.037 20 N -0.211 5.211 21 C 0.111 3.889 22 C -0.226 4.226 23 C -0.066 4.066 24 N -0.166 5.166 25 N -0.160 5.160 26 C -0.044 4.044 27 C -0.054 4.054 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.235 0.765 35 H 0.173 0.827 36 H 0.198 0.802 37 H 0.215 0.785 38 H 0.173 0.827 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.974 6.665 -14.167 20.333 hybrid contribution 2.466 -0.824 -0.178 2.606 sum -10.508 5.840 -14.345 18.717 Atomic orbital electron populations 1.21617 0.97149 0.98676 1.00002 1.21771 0.93484 0.99333 1.01169 1.18300 0.93493 0.88929 0.81165 0.98363 1.21550 0.91446 1.38917 1.06705 0.90994 1.25743 1.03151 0.94399 0.95021 1.70049 1.37087 1.38330 1.09855 0.85460 0.79309 0.78405 0.77538 1.19744 1.21397 1.18764 1.46185 1.15182 1.56038 1.17564 1.18385 0.82207 0.78962 0.87689 1.90787 1.51461 1.59857 1.41143 1.20972 0.98748 1.04471 0.95720 1.22067 0.98381 0.95169 0.91455 1.22498 0.98592 0.98505 0.99473 1.23634 0.90173 0.93571 0.96309 1.67888 1.34748 1.19050 0.99382 1.18968 0.89571 0.89741 0.90649 1.18418 0.93569 1.17691 0.92941 1.23405 0.96398 0.95714 0.91122 1.77109 0.94829 1.24812 1.19887 1.48545 1.09424 1.51253 1.06785 1.22182 0.75263 1.04470 1.02510 1.22782 0.94297 0.98999 0.89312 0.94069 0.95947 0.93918 0.94095 0.91127 0.92702 0.76536 0.82748 0.80171 0.78496 0.82682 0.88906 0.86746 0.89795 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.51 71.99 0.61 -4.80 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.71 16 3 C 0.28 14.52 2.24 44.24 0.10 14.62 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -28.74 8.73 25.60 0.22 -28.51 16 6 H 0.07 3.50 7.74 -2.92 -0.02 3.48 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -52.58 11.29 21.45 0.24 -52.33 16 9 Si 0.97 41.93 29.54 68.60 2.03 43.95 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 N -0.70 -28.75 4.97 -449.28 -2.23 -30.98 16 14 C 0.54 21.78 6.18 86.69 0.54 22.31 16 15 O -0.55 -25.86 9.01 -3.99 -0.04 -25.90 16 16 C -0.19 -6.18 5.91 -19.82 -0.12 -6.30 16 17 C -0.04 -1.03 9.62 22.71 0.22 -0.81 16 18 C -0.17 -2.76 10.09 22.35 0.23 -2.54 16 19 C 0.12 2.16 11.16 84.76 0.95 3.11 16 20 N -0.50 -13.17 10.30 -183.96 -1.89 -15.06 16 21 C 0.25 7.88 6.65 42.22 0.28 8.16 16 22 C -0.21 -7.39 4.69 -20.35 -0.10 -7.48 16 23 C 0.12 4.77 8.93 85.57 0.76 5.53 16 24 N -0.34 -13.27 12.53 -56.37 -0.71 -13.98 16 25 N -0.38 -11.20 3.99 -368.68 -1.47 -12.68 16 26 C 0.10 1.68 11.45 127.77 1.46 3.14 16 27 C 0.09 2.72 11.44 83.91 0.96 3.68 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.02 1.12 7.84 -2.39 -0.02 1.10 16 30 H 0.04 1.92 5.65 -2.39 -0.01 1.90 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.40 13.76 6.69 -92.71 -0.62 13.14 16 35 H 0.15 2.96 6.57 -2.91 -0.02 2.94 16 36 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 6.50 7.63 -2.91 -0.02 6.48 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.20 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -75.62 348.14 3.09 -72.53 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.43 Total: 28.69 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.73 Total: 5.76 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -6.07 Total: -125.03 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.04 Total: -25.90 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -75.62 3.09 -72.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597506485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.364 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds