Wall clock time and date at job start Tue Mar 31 2020 10:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47061 * 2 1 4 4 H 1.08998 * 109.47262 * 304.99740 * 3 2 1 5 5 C 1.50705 * 109.47239 * 184.99766 * 3 2 1 6 6 C 1.38235 * 119.99973 * 128.86745 * 5 3 2 7 7 C 1.38244 * 119.99932 * 179.78846 * 6 5 3 8 8 C 1.38238 * 119.99709 * 0.44802 * 7 6 5 9 9 C 1.38237 * 120.00144 * 359.81318 * 8 7 6 10 10 C 1.38230 * 119.99946 * 359.97099 * 9 8 7 11 11 N 1.46498 * 109.47393 * 65.00328 * 3 2 1 12 12 C 1.35313 * 125.87412 * 84.10887 * 11 3 2 13 13 C 1.35348 * 106.17741 * 180.12038 * 12 11 3 14 14 C 1.50703 * 126.74812 * 179.84961 * 13 12 11 15 15 N 1.46496 * 109.46865 * 94.71637 * 14 13 12 16 16 C 1.34775 * 120.00055 * 179.97438 * 15 14 13 17 17 O 1.21683 * 120.00242 * 359.72982 * 16 15 14 18 18 C 1.46382 * 119.99963 * 179.97438 * 16 15 14 19 19 H 1.07996 * 120.00083 * 0.02562 * 18 16 15 20 20 C 1.40047 * 119.99654 * 180.02562 * 18 16 15 21 21 N 1.30665 * 120.00177 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99795 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47621 * 89.99344 * 22 20 18 24 24 H 1.48502 * 109.47043 * 209.99936 * 22 20 18 25 25 H 1.48508 * 109.47192 * 329.99559 * 22 20 18 26 26 N 1.33770 * 106.49560 * 359.59248 * 13 12 11 27 27 N 1.28632 * 108.88798 * 0.26436 * 26 13 12 28 28 H 1.08998 * 109.47139 * 300.00054 * 1 2 3 29 29 H 1.08998 * 109.46895 * 60.00030 * 1 2 3 30 30 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47139 * 239.99946 * 2 1 3 32 32 H 1.09004 * 109.47249 * 120.00173 * 2 1 3 33 33 H 1.07995 * 120.00104 * 0.02562 * 6 5 3 34 34 H 1.07997 * 119.99885 * 180.27316 * 7 6 5 35 35 H 1.08002 * 119.99816 * 179.82931 * 8 7 6 36 36 H 1.07994 * 119.99914 * 180.02562 * 9 8 7 37 37 H 1.07997 * 119.99965 * 180.02562 * 10 9 8 38 38 H 1.08003 * 126.90869 * 359.97241 * 12 11 3 39 39 H 1.08995 * 109.47392 * 334.71681 * 14 13 12 40 40 H 1.08998 * 109.47117 * 214.71083 * 14 13 12 41 41 H 0.97011 * 120.00074 * 0.02562 * 15 14 13 42 42 H 0.97002 * 120.00083 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 6 4.1551 2.2231 -1.0873 7 6 5.5331 2.2282 -1.1980 8 6 6.2973 1.4473 -0.3512 9 6 5.6838 0.6643 0.6088 10 6 4.3062 0.6627 0.7224 11 7 1.6525 2.0975 1.2518 12 6 2.3244 2.0277 2.4242 13 6 1.6191 2.7718 3.3079 14 6 1.9545 3.0075 4.7581 15 7 2.7038 4.2596 4.8887 16 6 3.1124 4.6769 6.1033 17 8 2.8548 4.0161 7.0921 18 6 3.8616 5.9277 6.2337 19 1 4.0864 6.5164 5.3567 20 6 4.2867 6.3609 7.4958 21 7 4.0142 5.6489 8.5570 22 14 5.2420 7.9575 7.6623 23 1 4.2947 9.0820 7.8699 24 1 6.1625 7.8647 8.8240 25 1 6.0287 8.1950 6.4253 26 7 0.5690 3.2613 2.6393 27 7 0.6176 2.8433 1.4238 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5578 2.8306 -1.7511 34 1 6.0123 2.8400 -1.9478 35 1 7.3737 1.4491 -0.4394 36 1 6.2809 0.0545 1.2706 37 1 3.8270 0.0513 1.4726 38 1 3.2383 1.4853 2.6168 39 1 2.5602 2.1812 5.1300 40 1 1.0339 3.0729 5.3379 41 1 2.9051 4.7888 4.1009 42 1 4.3089 5.9488 9.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603215220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:39 Heat of formation + Delta-G solvation = 57.473322 kcal Electronic energy + Delta-G solvation = -25275.659527 eV Core-core repulsion = 21642.721834 eV Total energy + Delta-G solvation = -3632.937693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.41753 -40.50549 -39.36412 -37.35796 -35.56654 -34.49898 -33.23542 -32.45062 -32.08176 -31.65143 -29.01462 -27.73945 -26.81051 -24.25184 -23.59753 -23.16198 -22.44250 -21.75822 -21.38544 -19.39284 -18.39976 -17.78211 -17.56457 -17.31798 -16.55793 -16.26227 -15.93598 -15.90279 -15.70533 -15.26685 -14.95896 -14.76611 -14.51240 -14.29132 -14.13974 -13.79060 -13.57855 -13.39953 -13.11546 -12.93777 -12.77916 -12.69406 -12.59685 -12.58140 -12.16721 -12.13188 -12.00266 -11.86746 -11.80868 -11.03574 -10.91926 -10.45370 -9.89765 -9.87335 -9.80190 -9.50928 -8.27817 -6.84614 0.11838 0.41927 0.55794 1.30740 1.41830 1.43165 1.46681 1.58303 2.27251 2.48105 2.80910 3.01066 3.25928 3.37277 3.57666 3.63003 3.72827 3.81917 4.01593 4.05462 4.12124 4.20037 4.24018 4.29524 4.46827 4.54995 4.57742 4.66344 4.73576 4.90092 4.93780 4.94727 4.98351 5.04674 5.06816 5.26253 5.33011 5.45031 5.47565 5.56745 5.63226 5.87052 5.99276 6.15222 6.25962 6.87681 7.43985 7.50499 8.48311 8.67841 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.003314 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.969540 B = 8447.927930 C = 9690.742704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.184 3.816 4 H 0.130 0.870 5 C -0.123 4.123 6 C -0.104 4.104 7 C -0.127 4.127 8 C -0.112 4.112 9 C -0.126 4.126 10 C -0.111 4.111 11 N -0.268 5.268 12 C -0.016 4.016 13 C -0.041 4.041 14 C 0.225 3.775 15 N -0.749 5.749 16 C 0.541 3.459 17 O -0.628 6.628 18 C -0.573 4.573 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.819 5.819 22 Si 0.998 3.002 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.250 1.250 26 N -0.293 5.293 27 N -0.096 5.096 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.211 0.789 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.390 0.610 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -12.452 -25.007 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C 0.085 3.915 4 H 0.148 0.852 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.144 4.144 8 C -0.130 4.130 9 C -0.144 4.144 10 C -0.129 4.129 11 N -0.061 5.061 12 C -0.168 4.168 13 C -0.179 4.179 14 C 0.099 3.901 15 N -0.403 5.403 16 C 0.346 3.654 17 O -0.515 6.515 18 C -0.609 4.609 19 H 0.101 0.899 20 C -0.185 4.185 21 N -0.449 5.449 22 Si 0.817 3.183 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.173 1.173 26 N -0.160 5.160 27 N -0.074 5.074 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.228 0.772 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.223 0.777 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.745 -12.381 -24.819 27.871 hybrid contribution 1.062 0.348 0.571 1.255 sum 3.807 -12.034 -24.247 27.336 Atomic orbital electron populations 1.21799 0.94918 1.02800 1.01750 1.22009 0.96704 0.92084 1.05391 1.20932 0.92566 0.95777 0.82272 0.85215 1.19644 0.92586 1.00677 0.99480 1.21301 0.95671 0.97380 0.97866 1.21472 0.93566 0.99351 1.00052 1.21616 1.01369 0.95368 0.94655 1.21469 0.94545 0.99613 0.98796 1.21298 0.94603 0.98466 0.98579 1.47778 1.16066 1.31611 1.10694 1.23599 1.02169 1.05736 0.85290 1.21860 0.95353 1.02801 0.97911 1.18886 0.95403 0.88432 0.87421 1.45837 1.60714 1.24468 1.09288 1.18568 0.79285 0.86551 0.81006 1.90551 1.62487 1.59952 1.38542 1.21384 1.37732 1.06654 0.95152 0.89851 1.26947 0.95290 1.01856 0.94415 1.70176 1.36961 1.37990 0.99734 0.85018 0.77992 0.76111 0.79149 1.18835 1.19416 1.17308 1.75046 1.21365 1.20835 0.98781 1.78184 1.07608 1.08686 1.12938 0.95243 0.91327 0.90672 0.86421 0.90568 0.84444 0.83820 0.83953 0.84069 0.84777 0.77204 0.91104 0.93881 0.77737 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.79 71.98 0.70 -1.55 16 2 C -0.12 -1.46 5.21 30.59 0.16 -1.30 16 3 C 0.18 2.87 2.90 44.25 0.13 3.00 16 4 H 0.13 1.76 7.90 -2.39 -0.02 1.74 16 5 C -0.12 -1.82 4.69 -19.86 -0.09 -1.91 16 6 C -0.10 -1.43 9.67 22.27 0.22 -1.22 16 7 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 8 C -0.11 -1.44 10.05 22.27 0.22 -1.21 16 9 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 10 C -0.11 -1.59 7.28 22.27 0.16 -1.42 16 11 N -0.27 -6.54 2.80 -330.75 -0.93 -7.47 16 12 C -0.02 -0.43 10.33 83.49 0.86 0.44 16 13 C -0.04 -1.45 6.61 41.60 0.28 -1.18 16 14 C 0.22 9.56 6.23 85.63 0.53 10.10 16 15 N -0.75 -36.32 5.54 -471.16 -2.61 -38.93 16 16 C 0.54 32.56 7.75 86.36 0.67 33.23 16 17 O -0.63 -42.94 15.02 -4.29 -0.06 -43.01 16 18 C -0.57 -33.50 9.54 24.83 0.24 -33.26 16 19 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 20 C 0.03 1.72 5.50 85.31 0.47 2.19 16 21 N -0.82 -50.79 11.83 21.83 0.26 -50.53 16 22 Si 1.00 41.71 29.56 68.60 2.03 43.74 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 26 N -0.29 -11.14 12.41 -48.60 -0.60 -11.74 16 27 N -0.10 -3.03 12.55 37.02 0.46 -2.57 16 28 H 0.03 0.62 7.22 -2.39 -0.02 0.60 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.93 7.15 -2.38 -0.02 0.91 16 33 H 0.14 1.47 7.97 -2.91 -0.02 1.45 16 34 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.13 1.63 6.13 -2.91 -0.02 1.61 16 38 H 0.21 4.55 5.66 -2.91 -0.02 4.53 16 39 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.39 17.36 8.44 -92.70 -0.78 16.57 16 42 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -82.41 358.17 3.81 -78.61 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.27 Total: 28.88 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.99 Total: 3.02 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -3.42 Total: -111.24 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.06 Total: -43.01 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -82.41 3.81 -78.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603215220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.079 kcal (2) G-P(sol) polarization free energy of solvation -82.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds