Wall clock time and date at job start Tue Mar 31 2020 10:37:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53006 * 109.47511 * 2 1
4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1
5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1
6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2
7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2
8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3
9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3
10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5
11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5
12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5
13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1
14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2
15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3
16 16 C 1.47855 * 119.99622 * 179.97438 * 14 13 3
17 17 C 1.39573 * 120.14385 * 359.72367 * 16 14 13
18 18 C 1.37963 * 119.84915 * 179.79190 * 17 16 14
19 19 C 1.38350 * 120.14396 * 0.48150 * 18 17 16
20 20 C 1.50708 * 119.85146 * 179.76357 * 19 18 17
21 21 N 1.46489 * 109.47449 * 269.98032 * 20 19 18
22 22 C 1.34435 * 126.82035 * 124.71048 * 21 20 19
23 23 N 1.30834 * 108.07609 * 179.89527 * 22 21 20
24 24 C 1.33248 * 109.82857 * 0.38166 * 23 22 21
25 25 N 1.30710 * 108.94492 * 359.76281 * 24 23 22
26 26 C 1.38363 * 120.29611 * 359.74886 * 19 18 17
27 27 C 1.37956 * 120.14219 * 0.02562 * 26 19 18
28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3
29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47087 * 300.00556 * 1 2 3
31 31 H 1.08999 * 109.47149 * 240.00193 * 2 1 3
32 32 H 1.08996 * 109.47208 * 119.99805 * 2 1 3
33 33 H 0.97003 * 119.99675 * 354.92508 * 8 7 5
34 34 H 0.96997 * 119.99566 * 264.99631 * 13 3 2
35 35 H 1.07996 * 120.07301 * 359.97438 * 17 16 14
36 36 H 1.08002 * 119.92513 * 180.23279 * 18 17 16
37 37 H 1.08996 * 109.46991 * 29.98779 * 20 19 18
38 38 H 1.09004 * 109.47001 * 149.98108 * 20 19 18
39 39 H 1.07994 * 125.96208 * 0.03607 * 22 21 20
40 40 H 1.08001 * 125.52197 * 179.72734 * 24 23 22
41 41 H 1.08000 * 119.92848 * 179.97438 * 26 19 18
42 42 H 1.08000 * 120.07256 * 180.02562 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.5974 1.9844 0.8359
5 6 3.5407 1.4447 0.1381
6 1 4.1572 1.8010 -0.6740
7 6 4.1267 0.9918 1.3011
8 7 5.3846 0.6081 1.2974
9 14 3.1338 0.9231 2.8819
10 1 3.2701 2.2113 3.6083
11 1 1.7040 0.6860 2.5586
12 1 3.6382 -0.1823 3.7356
13 7 1.6644 2.0933 -1.2576
14 6 0.4483 2.6598 -1.3861
15 8 -0.3370 2.6304 -0.4588
16 6 0.0693 3.3172 -2.6551
17 6 0.9709 3.3577 -3.7199
18 6 0.6094 3.9689 -4.9028
19 6 -0.6398 4.5494 -5.0314
20 6 -1.0259 5.2199 -6.3247
21 7 -0.6439 6.6333 -6.2751
22 6 0.1343 7.2888 -7.1537
23 7 0.2336 8.5323 -6.7590
24 6 -0.4575 8.7057 -5.6331
25 7 -1.0127 7.5711 -5.2969
26 6 -1.5364 4.5169 -3.9781
27 6 -1.1892 3.9049 -2.7914
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 5.8787 0.5738 0.4634
34 1 2.2909 2.1165 -1.9977
35 1 1.9480 2.9091 -3.6190
36 1 1.3046 3.9977 -5.7287
37 1 -0.5119 4.7334 -7.1537
38 1 -2.1034 5.1396 -6.4681
39 1 0.5950 6.8639 -8.0331
40 1 -0.5442 9.6332 -5.0865
41 1 -2.5099 4.9723 -4.0848
42 1 -1.8901 3.8798 -1.9701
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000613037128.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:37:44
Heat of formation + Delta-G solvation = 77.420008 kcal
Electronic energy + Delta-G solvation = -25088.367417 eV
Core-core repulsion = 21456.294678 eV
Total energy + Delta-G solvation = -3632.072739 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.31165 -40.06657 -38.50589 -35.38417 -34.82550 -32.64049 -31.89818 -31.49414
-31.12126 -30.74928 -27.67733 -26.73894 -23.42416 -22.92485 -22.35341 -22.16920
-21.73921 -20.49296 -19.57729 -18.28680 -17.69458 -17.03838 -16.47805 -15.82537
-15.53983 -15.14385 -14.96462 -14.75544 -14.57865 -14.29862 -13.74863 -13.63184
-13.24350 -13.17509 -12.90980 -12.63189 -12.44096 -12.29270 -12.16023 -11.81732
-11.69510 -11.19842 -10.82707 -10.74683 -10.49542 -10.32512 -10.08246 -10.00516
-9.91894 -9.74140 -9.34988 -9.13904 -9.12679 -9.00742 -8.35425 -8.13219
-6.62592 -4.25391 0.63339 1.23601 1.37048 2.07454 2.71664 3.12799
3.39340 3.43564 3.58750 3.84039 3.93606 3.99860 4.05186 4.27209
4.41386 4.59746 4.63738 4.72771 4.87879 4.96894 5.09809 5.16794
5.23453 5.42036 5.62665 5.81287 5.92793 6.04024 6.06489 6.11764
6.15356 6.22591 6.24860 6.32413 6.47237 6.66035 6.70711 6.76621
6.91868 7.01209 7.32329 7.34712 7.61795 7.80464 8.20380 8.39937
8.65101 8.89319 9.41713 10.76210
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.021729 B = 0.002806 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1288.265668 B = 9974.546103 C =10436.463394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.129 4.129
3 C 0.247 3.753
4 H 0.045 0.955
5 C -0.624 4.624
6 H 0.062 0.938
7 C 0.045 3.955
8 N -0.892 5.892
9 Si 1.034 2.966
10 H -0.283 1.283
11 H -0.268 1.268
12 H -0.283 1.283
13 N -0.694 5.694
14 C 0.540 3.460
15 O -0.544 6.544
16 C -0.107 4.107
17 C -0.092 4.092
18 C -0.107 4.107
19 C -0.104 4.104
20 C 0.172 3.828
21 N -0.375 5.375
22 C 0.251 3.749
23 N -0.548 5.548
24 C 0.195 3.805
25 N -0.308 5.308
26 C -0.091 4.091
27 C -0.067 4.067
28 H 0.048 0.952
29 H 0.030 0.970
30 H 0.052 0.948
31 H 0.050 0.950
32 H 0.061 0.939
33 H 0.271 0.729
34 H 0.391 0.609
35 H 0.131 0.869
36 H 0.126 0.874
37 H 0.112 0.888
38 H 0.099 0.901
39 H 0.218 0.782
40 H 0.216 0.784
41 H 0.128 0.872
42 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.640 8.087 -18.645 23.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.167 4.167
3 C 0.144 3.856
4 H 0.063 0.937
5 C -0.661 4.661
6 H 0.080 0.920
7 C -0.162 4.162
8 N -0.524 5.524
9 Si 0.860 3.140
10 H -0.209 1.209
11 H -0.193 1.193
12 H -0.209 1.209
13 N -0.341 5.341
14 C 0.325 3.675
15 O -0.424 6.424
16 C -0.110 4.110
17 C -0.111 4.111
18 C -0.125 4.125
19 C -0.105 4.105
20 C 0.051 3.949
21 N -0.166 5.166
22 C -0.046 4.046
23 N -0.275 5.275
24 C -0.108 4.108
25 N -0.135 5.135
26 C -0.110 4.110
27 C -0.086 4.086
28 H 0.067 0.933
29 H 0.050 0.950
30 H 0.071 0.929
31 H 0.068 0.932
32 H 0.080 0.920
33 H 0.081 0.919
34 H 0.225 0.775
35 H 0.149 0.851
36 H 0.144 0.856
37 H 0.130 0.870
38 H 0.117 0.883
39 H 0.234 0.766
40 H 0.232 0.768
41 H 0.146 0.854
42 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -13.331 7.770 -15.884 22.145
hybrid contribution 0.498 0.181 -2.211 2.273
sum -12.833 7.950 -18.095 23.566
Atomic orbital electron populations
1.21897 0.97349 0.98906 1.02027 1.22203 0.93778 0.99590 1.01172
1.19161 0.95876 0.88595 0.81941 0.93705 1.22032 0.89625 1.49625
1.04842 0.92030 1.25643 0.96846 0.91918 1.01815 1.70835 1.10498
1.40056 1.31058 0.84188 0.76419 0.77476 0.75892 1.20929 1.19276
1.20926 1.46250 1.14244 1.55356 1.18262 1.18224 0.82975 0.79344
0.86942 1.90736 1.50947 1.60064 1.40605 1.20404 0.95397 1.00345
0.94883 1.21371 0.99215 0.98011 0.92467 1.20906 0.95439 0.98264
0.97926 1.19799 0.95286 0.99979 0.95461 1.20714 1.02477 0.74953
0.96800 1.50662 1.37463 1.09849 1.18644 1.26091 0.93239 0.88723
0.96505 1.70539 1.25686 1.16716 1.14607 1.26034 0.94161 0.97608
0.93026 1.78113 1.24422 0.99224 1.11757 1.20958 0.99575 0.98138
0.92340 1.21299 0.95470 0.94389 0.97473 0.93335 0.95045 0.92867
0.93160 0.92041 0.91938 0.77465 0.85148 0.85648 0.87026 0.88276
0.76590 0.76798 0.85390 0.84383
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.92 8.53 37.16 0.32 -2.60 16
2 C -0.13 -2.85 5.03 -26.73 -0.13 -2.98 16
3 C 0.25 5.86 1.78 -69.08 -0.12 5.74 16
4 H 0.05 1.16 5.99 -51.93 -0.31 0.85 16
5 C -0.62 -16.65 8.97 -34.44 -0.31 -16.96 16
6 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16
7 C 0.05 1.26 5.25 -17.82 -0.09 1.17 16
8 N -0.89 -26.27 13.70 55.43 0.76 -25.51 16
9 Si 1.03 24.87 26.33 -169.99 -4.48 20.40 16
10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
11 H -0.27 -6.13 5.88 56.52 0.33 -5.79 16
12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
13 N -0.69 -13.96 4.98 -55.87 -0.28 -14.23 16
14 C 0.54 10.40 6.37 -12.33 -0.08 10.32 16
15 O -0.54 -12.00 13.48 5.32 0.07 -11.93 16
16 C -0.11 -1.63 5.87 -104.97 -0.62 -2.25 16
17 C -0.09 -1.15 9.54 -39.18 -0.37 -1.53 16
18 C -0.11 -1.06 9.68 -39.64 -0.38 -1.44 16
19 C -0.10 -0.97 5.35 -104.53 -0.56 -1.53 16
20 C 0.17 1.05 6.67 -5.20 -0.03 1.02 16
21 N -0.38 -3.25 3.68 -63.82 -0.23 -3.49 16
22 C 0.25 1.93 12.63 -90.65 -1.14 0.79 16
23 N -0.55 -5.74 11.19 -15.83 -0.18 -5.91 16
24 C 0.19 2.00 13.03 -91.81 -1.20 0.81 16
25 N -0.31 -3.49 12.56 29.29 0.37 -3.13 16
26 C -0.09 -0.99 9.68 -39.64 -0.38 -1.38 16
27 C -0.07 -0.92 9.60 -39.19 -0.38 -1.29 16
28 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16
29 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16
30 H 0.05 1.13 7.88 -51.93 -0.41 0.72 16
31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
32 H 0.06 1.41 5.64 -51.93 -0.29 1.11 16
33 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16
34 H 0.39 7.00 6.56 -40.82 -0.27 6.73 16
35 H 0.13 1.52 6.41 -52.49 -0.34 1.19 16
36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
37 H 0.11 0.29 8.03 -51.93 -0.42 -0.12 16
38 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16
39 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16
40 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16
41 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16
42 H 0.14 1.92 7.65 -52.49 -0.40 1.52 16
LS Contribution 351.05 15.07 5.29 5.29
Total: -1.00 -34.71 351.05 -9.49 -44.20
By element:
Atomic # 1 Polarization: 11.76 SS G_CDS: -5.32 Total: 6.44 kcal
Atomic # 6 Polarization: -6.64 SS G_CDS: -5.49 Total: -12.13 kcal
Atomic # 7 Polarization: -52.71 SS G_CDS: 0.44 Total: -52.27 kcal
Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal
Atomic # 14 Polarization: 24.87 SS G_CDS: -4.48 Total: 20.40 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -34.71 -9.49 -44.20 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613037128.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.623 kcal
(2) G-P(sol) polarization free energy of solvation -34.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds