Wall clock time and date at job start Tue Mar 31 2020 10:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99622 * 179.97438 * 14 13 3 17 17 C 1.39573 * 120.14385 * 359.72367 * 16 14 13 18 18 C 1.37963 * 119.84915 * 179.79190 * 17 16 14 19 19 C 1.38350 * 120.14396 * 0.48150 * 18 17 16 20 20 C 1.50708 * 119.85146 * 179.76357 * 19 18 17 21 21 N 1.46489 * 109.47449 * 269.98032 * 20 19 18 22 22 C 1.34435 * 126.82035 * 124.71048 * 21 20 19 23 23 N 1.30834 * 108.07609 * 179.89527 * 22 21 20 24 24 C 1.33248 * 109.82857 * 0.38166 * 23 22 21 25 25 N 1.30710 * 108.94492 * 359.76281 * 24 23 22 26 26 C 1.38363 * 120.29611 * 359.74886 * 19 18 17 27 27 C 1.37956 * 120.14219 * 0.02562 * 26 19 18 28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 31 31 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 32 32 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 33 33 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 34 34 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 35 35 H 1.07996 * 120.07301 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.92513 * 180.23279 * 18 17 16 37 37 H 1.08996 * 109.46991 * 29.98779 * 20 19 18 38 38 H 1.09004 * 109.47001 * 149.98108 * 20 19 18 39 39 H 1.07994 * 125.96208 * 0.03607 * 22 21 20 40 40 H 1.08001 * 125.52197 * 179.72734 * 24 23 22 41 41 H 1.08000 * 119.92848 * 179.97438 * 26 19 18 42 42 H 1.08000 * 120.07256 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3370 2.6304 -0.4588 16 6 0.0693 3.3172 -2.6551 17 6 0.9709 3.3577 -3.7199 18 6 0.6094 3.9689 -4.9028 19 6 -0.6398 4.5494 -5.0314 20 6 -1.0259 5.2199 -6.3247 21 7 -0.6439 6.6333 -6.2751 22 6 0.1343 7.2888 -7.1537 23 7 0.2336 8.5323 -6.7590 24 6 -0.4575 8.7057 -5.6331 25 7 -1.0127 7.5711 -5.2969 26 6 -1.5364 4.5169 -3.9781 27 6 -1.1892 3.9049 -2.7914 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8787 0.5738 0.4634 34 1 2.2909 2.1165 -1.9977 35 1 1.9480 2.9091 -3.6190 36 1 1.3046 3.9977 -5.7287 37 1 -0.5119 4.7334 -7.1537 38 1 -2.1034 5.1396 -6.4681 39 1 0.5950 6.8639 -8.0331 40 1 -0.5442 9.6332 -5.0865 41 1 -2.5099 4.9723 -4.0848 42 1 -1.8901 3.8798 -1.9701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:44 Heat of formation + Delta-G solvation = 77.420008 kcal Electronic energy + Delta-G solvation = -25088.367417 eV Core-core repulsion = 21456.294678 eV Total energy + Delta-G solvation = -3632.072739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31165 -40.06657 -38.50589 -35.38417 -34.82550 -32.64049 -31.89818 -31.49414 -31.12126 -30.74928 -27.67733 -26.73894 -23.42416 -22.92485 -22.35341 -22.16920 -21.73921 -20.49296 -19.57729 -18.28680 -17.69458 -17.03838 -16.47805 -15.82537 -15.53983 -15.14385 -14.96462 -14.75544 -14.57865 -14.29862 -13.74863 -13.63184 -13.24350 -13.17509 -12.90980 -12.63189 -12.44096 -12.29270 -12.16023 -11.81732 -11.69510 -11.19842 -10.82707 -10.74683 -10.49542 -10.32512 -10.08246 -10.00516 -9.91894 -9.74140 -9.34988 -9.13904 -9.12679 -9.00742 -8.35425 -8.13219 -6.62592 -4.25391 0.63339 1.23601 1.37048 2.07454 2.71664 3.12799 3.39340 3.43564 3.58750 3.84039 3.93606 3.99860 4.05186 4.27209 4.41386 4.59746 4.63738 4.72771 4.87879 4.96894 5.09809 5.16794 5.23453 5.42036 5.62665 5.81287 5.92793 6.04024 6.06489 6.11764 6.15356 6.22591 6.24860 6.32413 6.47237 6.66035 6.70711 6.76621 6.91868 7.01209 7.32329 7.34712 7.61795 7.80464 8.20380 8.39937 8.65101 8.89319 9.41713 10.76210 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.002806 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.265668 B = 9974.546103 C =10436.463394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.247 3.753 4 H 0.045 0.955 5 C -0.624 4.624 6 H 0.062 0.938 7 C 0.045 3.955 8 N -0.892 5.892 9 Si 1.034 2.966 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.283 1.283 13 N -0.694 5.694 14 C 0.540 3.460 15 O -0.544 6.544 16 C -0.107 4.107 17 C -0.092 4.092 18 C -0.107 4.107 19 C -0.104 4.104 20 C 0.172 3.828 21 N -0.375 5.375 22 C 0.251 3.749 23 N -0.548 5.548 24 C 0.195 3.805 25 N -0.308 5.308 26 C -0.091 4.091 27 C -0.067 4.067 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.271 0.729 34 H 0.391 0.609 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.218 0.782 40 H 0.216 0.784 41 H 0.128 0.872 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 8.087 -18.645 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.661 4.661 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.524 5.524 9 Si 0.860 3.140 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.209 1.209 13 N -0.341 5.341 14 C 0.325 3.675 15 O -0.424 6.424 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.125 4.125 19 C -0.105 4.105 20 C 0.051 3.949 21 N -0.166 5.166 22 C -0.046 4.046 23 N -0.275 5.275 24 C -0.108 4.108 25 N -0.135 5.135 26 C -0.110 4.110 27 C -0.086 4.086 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.234 0.766 40 H 0.232 0.768 41 H 0.146 0.854 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.331 7.770 -15.884 22.145 hybrid contribution 0.498 0.181 -2.211 2.273 sum -12.833 7.950 -18.095 23.566 Atomic orbital electron populations 1.21897 0.97349 0.98906 1.02027 1.22203 0.93778 0.99590 1.01172 1.19161 0.95876 0.88595 0.81941 0.93705 1.22032 0.89625 1.49625 1.04842 0.92030 1.25643 0.96846 0.91918 1.01815 1.70835 1.10498 1.40056 1.31058 0.84188 0.76419 0.77476 0.75892 1.20929 1.19276 1.20926 1.46250 1.14244 1.55356 1.18262 1.18224 0.82975 0.79344 0.86942 1.90736 1.50947 1.60064 1.40605 1.20404 0.95397 1.00345 0.94883 1.21371 0.99215 0.98011 0.92467 1.20906 0.95439 0.98264 0.97926 1.19799 0.95286 0.99979 0.95461 1.20714 1.02477 0.74953 0.96800 1.50662 1.37463 1.09849 1.18644 1.26091 0.93239 0.88723 0.96505 1.70539 1.25686 1.16716 1.14607 1.26034 0.94161 0.97608 0.93026 1.78113 1.24422 0.99224 1.11757 1.20958 0.99575 0.98138 0.92340 1.21299 0.95470 0.94389 0.97473 0.93335 0.95045 0.92867 0.93160 0.92041 0.91938 0.77465 0.85148 0.85648 0.87026 0.88276 0.76590 0.76798 0.85390 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.53 37.16 0.32 -2.60 16 2 C -0.13 -2.85 5.03 -26.73 -0.13 -2.98 16 3 C 0.25 5.86 1.78 -69.08 -0.12 5.74 16 4 H 0.05 1.16 5.99 -51.93 -0.31 0.85 16 5 C -0.62 -16.65 8.97 -34.44 -0.31 -16.96 16 6 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 7 C 0.05 1.26 5.25 -17.82 -0.09 1.17 16 8 N -0.89 -26.27 13.70 55.43 0.76 -25.51 16 9 Si 1.03 24.87 26.33 -169.99 -4.48 20.40 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.13 5.88 56.52 0.33 -5.79 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.69 -13.96 4.98 -55.87 -0.28 -14.23 16 14 C 0.54 10.40 6.37 -12.33 -0.08 10.32 16 15 O -0.54 -12.00 13.48 5.32 0.07 -11.93 16 16 C -0.11 -1.63 5.87 -104.97 -0.62 -2.25 16 17 C -0.09 -1.15 9.54 -39.18 -0.37 -1.53 16 18 C -0.11 -1.06 9.68 -39.64 -0.38 -1.44 16 19 C -0.10 -0.97 5.35 -104.53 -0.56 -1.53 16 20 C 0.17 1.05 6.67 -5.20 -0.03 1.02 16 21 N -0.38 -3.25 3.68 -63.82 -0.23 -3.49 16 22 C 0.25 1.93 12.63 -90.65 -1.14 0.79 16 23 N -0.55 -5.74 11.19 -15.83 -0.18 -5.91 16 24 C 0.19 2.00 13.03 -91.81 -1.20 0.81 16 25 N -0.31 -3.49 12.56 29.29 0.37 -3.13 16 26 C -0.09 -0.99 9.68 -39.64 -0.38 -1.38 16 27 C -0.07 -0.92 9.60 -39.19 -0.38 -1.29 16 28 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 29 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16 30 H 0.05 1.13 7.88 -51.93 -0.41 0.72 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.41 5.64 -51.93 -0.29 1.11 16 33 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 34 H 0.39 7.00 6.56 -40.82 -0.27 6.73 16 35 H 0.13 1.52 6.41 -52.49 -0.34 1.19 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.11 0.29 8.03 -51.93 -0.42 -0.12 16 38 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.14 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -34.71 351.05 -9.49 -44.20 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.32 Total: 6.44 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -5.49 Total: -12.13 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.44 Total: -52.27 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.48 Total: 20.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.71 -9.49 -44.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.623 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds