Wall clock time and date at job start Tue Mar 31 2020 10:37:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53006 * 109.47511 * 2 1
4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1
5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1
6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2
7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2
8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3
9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3
10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5
11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5
12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5
13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1
14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2
15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3
16 16 C 1.47855 * 119.99622 * 179.97438 * 14 13 3
17 17 C 1.39573 * 120.14385 * 359.72367 * 16 14 13
18 18 C 1.37963 * 119.84915 * 179.79190 * 17 16 14
19 19 C 1.38350 * 120.14396 * 0.48150 * 18 17 16
20 20 C 1.50708 * 119.85146 * 179.76357 * 19 18 17
21 21 N 1.46489 * 109.47449 * 269.98032 * 20 19 18
22 22 C 1.34435 * 126.82035 * 124.71048 * 21 20 19
23 23 N 1.30834 * 108.07609 * 179.89527 * 22 21 20
24 24 C 1.33248 * 109.82857 * 0.38166 * 23 22 21
25 25 N 1.30710 * 108.94492 * 359.76281 * 24 23 22
26 26 C 1.38363 * 120.29611 * 359.74886 * 19 18 17
27 27 C 1.37956 * 120.14219 * 0.02562 * 26 19 18
28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3
29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47087 * 300.00556 * 1 2 3
31 31 H 1.08999 * 109.47149 * 240.00193 * 2 1 3
32 32 H 1.08996 * 109.47208 * 119.99805 * 2 1 3
33 33 H 0.97003 * 119.99675 * 354.92508 * 8 7 5
34 34 H 0.96997 * 119.99566 * 264.99631 * 13 3 2
35 35 H 1.07996 * 120.07301 * 359.97438 * 17 16 14
36 36 H 1.08002 * 119.92513 * 180.23279 * 18 17 16
37 37 H 1.08996 * 109.46991 * 29.98779 * 20 19 18
38 38 H 1.09004 * 109.47001 * 149.98108 * 20 19 18
39 39 H 1.07994 * 125.96208 * 0.03607 * 22 21 20
40 40 H 1.08001 * 125.52197 * 179.72734 * 24 23 22
41 41 H 1.08000 * 119.92848 * 179.97438 * 26 19 18
42 42 H 1.08000 * 120.07256 * 180.02562 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.5974 1.9844 0.8359
5 6 3.5407 1.4447 0.1381
6 1 4.1572 1.8010 -0.6740
7 6 4.1267 0.9918 1.3011
8 7 5.3846 0.6081 1.2974
9 14 3.1338 0.9231 2.8819
10 1 3.2701 2.2113 3.6083
11 1 1.7040 0.6860 2.5586
12 1 3.6382 -0.1823 3.7356
13 7 1.6644 2.0933 -1.2576
14 6 0.4483 2.6598 -1.3861
15 8 -0.3370 2.6304 -0.4588
16 6 0.0693 3.3172 -2.6551
17 6 0.9709 3.3577 -3.7199
18 6 0.6094 3.9689 -4.9028
19 6 -0.6398 4.5494 -5.0314
20 6 -1.0259 5.2199 -6.3247
21 7 -0.6439 6.6333 -6.2751
22 6 0.1343 7.2888 -7.1537
23 7 0.2336 8.5323 -6.7590
24 6 -0.4575 8.7057 -5.6331
25 7 -1.0127 7.5711 -5.2969
26 6 -1.5364 4.5169 -3.9781
27 6 -1.1892 3.9049 -2.7914
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 5.8787 0.5738 0.4634
34 1 2.2909 2.1165 -1.9977
35 1 1.9480 2.9091 -3.6190
36 1 1.3046 3.9977 -5.7287
37 1 -0.5119 4.7334 -7.1537
38 1 -2.1034 5.1396 -6.4681
39 1 0.5950 6.8639 -8.0331
40 1 -0.5442 9.6332 -5.0865
41 1 -2.5099 4.9723 -4.0848
42 1 -1.8901 3.8798 -1.9701
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000613037128.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:37:43
Heat of formation + Delta-G solvation = 56.110065 kcal
Electronic energy + Delta-G solvation = -25089.291486 eV
Core-core repulsion = 21456.294678 eV
Total energy + Delta-G solvation = -3632.996808 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.93504 -41.32697 -39.71178 -37.12143 -35.60476 -34.55061 -33.45625 -32.20342
-31.97266 -31.87407 -29.28130 -27.78634 -24.66947 -24.09633 -23.73358 -22.77758
-22.66844 -21.83355 -21.19954 -20.03594 -18.66888 -18.20412 -17.55313 -17.05197
-16.54088 -16.31604 -16.00924 -15.80089 -15.64151 -15.33662 -14.92714 -14.76404
-14.55843 -14.53941 -14.35943 -14.18227 -13.69450 -13.64271 -13.37697 -13.11116
-12.70422 -12.54344 -12.50631 -12.33177 -12.06466 -11.75255 -11.57644 -11.19677
-11.01252 -10.92431 -10.75743 -10.60997 -10.50386 -10.04867 -10.02670 -9.78062
-8.83312 -6.46061 -0.33380 0.33837 0.76454 1.44328 1.45560 1.46556
1.68756 1.97815 2.06713 2.37113 2.40495 2.84125 2.95008 3.38217
3.58734 3.64834 3.82411 3.89604 3.94007 4.15812 4.27239 4.28699
4.33426 4.36265 4.49994 4.52198 4.58366 4.70751 4.83004 4.95927
5.04988 5.16100 5.20202 5.24495 5.28920 5.34988 5.41171 5.50369
5.50995 5.60111 5.65840 5.81405 5.98132 5.99187 6.49919 6.76561
7.17731 7.22733 7.35056 8.54837
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.021729 B = 0.002806 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1288.265668 B = 9974.546103 C =10436.463394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.126 4.126
3 C 0.252 3.748
4 H 0.023 0.977
5 C -0.620 4.620
6 H 0.041 0.959
7 C 0.003 3.997
8 N -0.922 5.922
9 Si 1.067 2.933
10 H -0.277 1.277
11 H -0.254 1.254
12 H -0.277 1.277
13 N -0.696 5.696
14 C 0.539 3.461
15 O -0.579 6.579
16 C -0.136 4.136
17 C -0.097 4.097
18 C -0.099 4.099
19 C -0.089 4.089
20 C 0.169 3.831
21 N -0.379 5.379
22 C 0.262 3.738
23 N -0.583 5.583
24 C 0.185 3.815
25 N -0.347 5.347
26 C -0.092 4.092
27 C -0.080 4.080
28 H 0.046 0.954
29 H 0.058 0.942
30 H 0.038 0.962
31 H 0.055 0.945
32 H 0.053 0.947
33 H 0.261 0.739
34 H 0.401 0.599
35 H 0.134 0.866
36 H 0.164 0.836
37 H 0.160 0.840
38 H 0.114 0.886
39 H 0.265 0.735
40 H 0.229 0.771
41 H 0.144 0.856
42 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.759 8.278 -21.605 26.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.165 4.165
3 C 0.147 3.853
4 H 0.041 0.959
5 C -0.657 4.657
6 H 0.059 0.941
7 C -0.199 4.199
8 N -0.556 5.556
9 Si 0.889 3.111
10 H -0.203 1.203
11 H -0.178 1.178
12 H -0.202 1.202
13 N -0.345 5.345
14 C 0.328 3.672
15 O -0.461 6.461
16 C -0.140 4.140
17 C -0.116 4.116
18 C -0.118 4.118
19 C -0.090 4.090
20 C 0.049 3.951
21 N -0.169 5.169
22 C -0.034 4.034
23 N -0.311 5.311
24 C -0.117 4.117
25 N -0.175 5.175
26 C -0.110 4.110
27 C -0.099 4.099
28 H 0.065 0.935
29 H 0.077 0.923
30 H 0.057 0.943
31 H 0.074 0.926
32 H 0.071 0.929
33 H 0.070 0.930
34 H 0.237 0.763
35 H 0.152 0.848
36 H 0.181 0.819
37 H 0.177 0.823
38 H 0.132 0.868
39 H 0.280 0.720
40 H 0.246 0.754
41 H 0.162 0.838
42 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -14.458 7.963 -18.879 25.077
hybrid contribution 0.834 0.210 -1.471 1.704
sum -13.624 8.172 -20.350 25.817
Atomic orbital electron populations
1.21763 0.95642 1.00412 1.01230 1.22106 0.95223 0.98149 1.01030
1.18861 0.93642 0.89739 0.83032 0.95925 1.22195 0.91281 1.48270
1.03996 0.94051 1.26712 0.97006 0.91555 1.04630 1.70927 1.11523
1.42506 1.30600 0.83744 0.76148 0.77899 0.73296 1.20294 1.17771
1.20243 1.46064 1.15200 1.55811 1.17418 1.18817 0.81912 0.78418
0.88101 1.90700 1.51757 1.61334 1.42310 1.20100 0.97074 1.02874
0.93913 1.21506 0.98880 0.98371 0.92820 1.21308 0.96187 0.96565
0.97698 1.20205 0.94366 0.98117 0.96301 1.21081 1.04309 0.73610
0.96148 1.50743 1.37593 1.10245 1.18357 1.26995 0.91652 0.87876
0.96855 1.70545 1.26810 1.18611 1.15118 1.26426 0.93910 0.98130
0.93267 1.78039 1.25765 1.00133 1.13596 1.21167 1.00746 0.97415
0.91713 1.21285 0.94825 0.95346 0.98466 0.93541 0.92270 0.94290
0.92593 0.92867 0.92951 0.76334 0.84817 0.81871 0.82277 0.86769
0.71983 0.75441 0.83830 0.85863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.29 8.53 71.98 0.61 -4.68 16
2 C -0.13 -5.56 5.03 30.59 0.15 -5.40 16
3 C 0.25 12.10 1.78 44.25 0.08 12.18 16
4 H 0.02 1.20 5.99 -2.38 -0.01 1.19 16
5 C -0.62 -33.79 8.97 25.60 0.23 -33.56 16
6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16
7 C 0.00 0.17 5.25 84.65 0.44 0.61 16
8 N -0.92 -55.34 13.70 21.45 0.29 -55.05 16
9 Si 1.07 50.67 26.33 68.60 1.81 52.48 16
10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
11 H -0.25 -11.37 5.88 99.48 0.59 -10.78 16
12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
13 N -0.70 -28.48 4.98 -448.96 -2.23 -30.72 16
14 C 0.54 21.23 6.37 86.79 0.55 21.78 16
15 O -0.58 -26.34 13.48 -3.87 -0.05 -26.39 16
16 C -0.14 -4.15 5.87 -20.09 -0.12 -4.27 16
17 C -0.10 -2.28 9.54 22.53 0.21 -2.07 16
18 C -0.10 -1.60 9.68 22.23 0.22 -1.38 16
19 C -0.09 -1.33 5.35 -19.81 -0.11 -1.44 16
20 C 0.17 1.21 6.67 85.64 0.57 1.78 16
21 N -0.38 -5.11 3.68 -355.82 -1.31 -6.42 16
22 C 0.26 2.96 12.63 180.36 2.28 5.24 16
23 N -0.58 -10.85 11.19 -204.00 -2.28 -13.13 16
24 C 0.19 3.57 13.03 180.76 2.36 5.92 16
25 N -0.35 -7.21 12.56 -61.24 -0.77 -7.98 16
26 C -0.09 -1.82 9.68 22.23 0.22 -1.60 16
27 C -0.08 -2.18 9.60 22.53 0.22 -1.96 16
28 H 0.05 1.85 5.63 -2.38 -0.01 1.83 16
29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
30 H 0.04 1.64 7.88 -2.39 -0.02 1.62 16
31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16
32 H 0.05 2.41 5.64 -2.39 -0.01 2.40 16
33 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16
34 H 0.40 14.54 6.56 -92.71 -0.61 13.93 16
35 H 0.13 2.96 6.41 -2.91 -0.02 2.94 16
36 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16
37 H 0.16 -0.30 8.03 -2.39 -0.02 -0.32 16
38 H 0.11 0.57 8.08 -2.39 -0.02 0.55 16
39 H 0.26 -0.03 8.06 -2.91 -0.02 -0.05 16
40 H 0.23 3.14 8.06 -2.91 -0.02 3.12 16
41 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16
42 H 0.12 3.60 7.65 -2.91 -0.02 3.58 16
Total: -1.00 -78.71 351.05 3.65 -75.06
By element:
Atomic # 1 Polarization: 20.71 SS G_CDS: 0.29 Total: 21.00 kcal
Atomic # 6 Polarization: -16.76 SS G_CDS: 7.92 Total: -8.85 kcal
Atomic # 7 Polarization: -106.99 SS G_CDS: -6.30 Total: -113.30 kcal
Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal
Atomic # 14 Polarization: 50.67 SS G_CDS: 1.81 Total: 52.48 kcal
Total: -78.71 3.65 -75.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613037128.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.167 kcal
(2) G-P(sol) polarization free energy of solvation -78.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.457 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.110 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds