Wall clock time and date at job start Tue Mar 31 2020 10:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99622 * 179.97438 * 14 13 3 17 17 C 1.39573 * 120.14385 * 359.72367 * 16 14 13 18 18 C 1.37963 * 119.84915 * 179.79190 * 17 16 14 19 19 C 1.38350 * 120.14396 * 0.48150 * 18 17 16 20 20 C 1.50708 * 119.85146 * 179.76357 * 19 18 17 21 21 N 1.46489 * 109.47449 * 269.98032 * 20 19 18 22 22 C 1.34435 * 126.82035 * 124.71048 * 21 20 19 23 23 N 1.30834 * 108.07609 * 179.89527 * 22 21 20 24 24 C 1.33248 * 109.82857 * 0.38166 * 23 22 21 25 25 N 1.30710 * 108.94492 * 359.76281 * 24 23 22 26 26 C 1.38363 * 120.29611 * 359.74886 * 19 18 17 27 27 C 1.37956 * 120.14219 * 0.02562 * 26 19 18 28 28 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 31 31 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 32 32 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 33 33 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 34 34 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 35 35 H 1.07996 * 120.07301 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.92513 * 180.23279 * 18 17 16 37 37 H 1.08996 * 109.46991 * 29.98779 * 20 19 18 38 38 H 1.09004 * 109.47001 * 149.98108 * 20 19 18 39 39 H 1.07994 * 125.96208 * 0.03607 * 22 21 20 40 40 H 1.08001 * 125.52197 * 179.72734 * 24 23 22 41 41 H 1.08000 * 119.92848 * 179.97438 * 26 19 18 42 42 H 1.08000 * 120.07256 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3370 2.6304 -0.4588 16 6 0.0693 3.3172 -2.6551 17 6 0.9709 3.3577 -3.7199 18 6 0.6094 3.9689 -4.9028 19 6 -0.6398 4.5494 -5.0314 20 6 -1.0259 5.2199 -6.3247 21 7 -0.6439 6.6333 -6.2751 22 6 0.1343 7.2888 -7.1537 23 7 0.2336 8.5323 -6.7590 24 6 -0.4575 8.7057 -5.6331 25 7 -1.0127 7.5711 -5.2969 26 6 -1.5364 4.5169 -3.9781 27 6 -1.1892 3.9049 -2.7914 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8787 0.5738 0.4634 34 1 2.2909 2.1165 -1.9977 35 1 1.9480 2.9091 -3.6190 36 1 1.3046 3.9977 -5.7287 37 1 -0.5119 4.7334 -7.1537 38 1 -2.1034 5.1396 -6.4681 39 1 0.5950 6.8639 -8.0331 40 1 -0.5442 9.6332 -5.0865 41 1 -2.5099 4.9723 -4.0848 42 1 -1.8901 3.8798 -1.9701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:43 Heat of formation + Delta-G solvation = 56.110065 kcal Electronic energy + Delta-G solvation = -25089.291486 eV Core-core repulsion = 21456.294678 eV Total energy + Delta-G solvation = -3632.996808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.93504 -41.32697 -39.71178 -37.12143 -35.60476 -34.55061 -33.45625 -32.20342 -31.97266 -31.87407 -29.28130 -27.78634 -24.66947 -24.09633 -23.73358 -22.77758 -22.66844 -21.83355 -21.19954 -20.03594 -18.66888 -18.20412 -17.55313 -17.05197 -16.54088 -16.31604 -16.00924 -15.80089 -15.64151 -15.33662 -14.92714 -14.76404 -14.55843 -14.53941 -14.35943 -14.18227 -13.69450 -13.64271 -13.37697 -13.11116 -12.70422 -12.54344 -12.50631 -12.33177 -12.06466 -11.75255 -11.57644 -11.19677 -11.01252 -10.92431 -10.75743 -10.60997 -10.50386 -10.04867 -10.02670 -9.78062 -8.83312 -6.46061 -0.33380 0.33837 0.76454 1.44328 1.45560 1.46556 1.68756 1.97815 2.06713 2.37113 2.40495 2.84125 2.95008 3.38217 3.58734 3.64834 3.82411 3.89604 3.94007 4.15812 4.27239 4.28699 4.33426 4.36265 4.49994 4.52198 4.58366 4.70751 4.83004 4.95927 5.04988 5.16100 5.20202 5.24495 5.28920 5.34988 5.41171 5.50369 5.50995 5.60111 5.65840 5.81405 5.98132 5.99187 6.49919 6.76561 7.17731 7.22733 7.35056 8.54837 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.002806 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.265668 B = 9974.546103 C =10436.463394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.252 3.748 4 H 0.023 0.977 5 C -0.620 4.620 6 H 0.041 0.959 7 C 0.003 3.997 8 N -0.922 5.922 9 Si 1.067 2.933 10 H -0.277 1.277 11 H -0.254 1.254 12 H -0.277 1.277 13 N -0.696 5.696 14 C 0.539 3.461 15 O -0.579 6.579 16 C -0.136 4.136 17 C -0.097 4.097 18 C -0.099 4.099 19 C -0.089 4.089 20 C 0.169 3.831 21 N -0.379 5.379 22 C 0.262 3.738 23 N -0.583 5.583 24 C 0.185 3.815 25 N -0.347 5.347 26 C -0.092 4.092 27 C -0.080 4.080 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.261 0.739 34 H 0.401 0.599 35 H 0.134 0.866 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.114 0.886 39 H 0.265 0.735 40 H 0.229 0.771 41 H 0.144 0.856 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 8.278 -21.605 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.147 3.853 4 H 0.041 0.959 5 C -0.657 4.657 6 H 0.059 0.941 7 C -0.199 4.199 8 N -0.556 5.556 9 Si 0.889 3.111 10 H -0.203 1.203 11 H -0.178 1.178 12 H -0.202 1.202 13 N -0.345 5.345 14 C 0.328 3.672 15 O -0.461 6.461 16 C -0.140 4.140 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.090 4.090 20 C 0.049 3.951 21 N -0.169 5.169 22 C -0.034 4.034 23 N -0.311 5.311 24 C -0.117 4.117 25 N -0.175 5.175 26 C -0.110 4.110 27 C -0.099 4.099 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.237 0.763 35 H 0.152 0.848 36 H 0.181 0.819 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.280 0.720 40 H 0.246 0.754 41 H 0.162 0.838 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.458 7.963 -18.879 25.077 hybrid contribution 0.834 0.210 -1.471 1.704 sum -13.624 8.172 -20.350 25.817 Atomic orbital electron populations 1.21763 0.95642 1.00412 1.01230 1.22106 0.95223 0.98149 1.01030 1.18861 0.93642 0.89739 0.83032 0.95925 1.22195 0.91281 1.48270 1.03996 0.94051 1.26712 0.97006 0.91555 1.04630 1.70927 1.11523 1.42506 1.30600 0.83744 0.76148 0.77899 0.73296 1.20294 1.17771 1.20243 1.46064 1.15200 1.55811 1.17418 1.18817 0.81912 0.78418 0.88101 1.90700 1.51757 1.61334 1.42310 1.20100 0.97074 1.02874 0.93913 1.21506 0.98880 0.98371 0.92820 1.21308 0.96187 0.96565 0.97698 1.20205 0.94366 0.98117 0.96301 1.21081 1.04309 0.73610 0.96148 1.50743 1.37593 1.10245 1.18357 1.26995 0.91652 0.87876 0.96855 1.70545 1.26810 1.18611 1.15118 1.26426 0.93910 0.98130 0.93267 1.78039 1.25765 1.00133 1.13596 1.21167 1.00746 0.97415 0.91713 1.21285 0.94825 0.95346 0.98466 0.93541 0.92270 0.94290 0.92593 0.92867 0.92951 0.76334 0.84817 0.81871 0.82277 0.86769 0.71983 0.75441 0.83830 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.53 71.98 0.61 -4.68 16 2 C -0.13 -5.56 5.03 30.59 0.15 -5.40 16 3 C 0.25 12.10 1.78 44.25 0.08 12.18 16 4 H 0.02 1.20 5.99 -2.38 -0.01 1.19 16 5 C -0.62 -33.79 8.97 25.60 0.23 -33.56 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 7 C 0.00 0.17 5.25 84.65 0.44 0.61 16 8 N -0.92 -55.34 13.70 21.45 0.29 -55.05 16 9 Si 1.07 50.67 26.33 68.60 1.81 52.48 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.25 -11.37 5.88 99.48 0.59 -10.78 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.70 -28.48 4.98 -448.96 -2.23 -30.72 16 14 C 0.54 21.23 6.37 86.79 0.55 21.78 16 15 O -0.58 -26.34 13.48 -3.87 -0.05 -26.39 16 16 C -0.14 -4.15 5.87 -20.09 -0.12 -4.27 16 17 C -0.10 -2.28 9.54 22.53 0.21 -2.07 16 18 C -0.10 -1.60 9.68 22.23 0.22 -1.38 16 19 C -0.09 -1.33 5.35 -19.81 -0.11 -1.44 16 20 C 0.17 1.21 6.67 85.64 0.57 1.78 16 21 N -0.38 -5.11 3.68 -355.82 -1.31 -6.42 16 22 C 0.26 2.96 12.63 180.36 2.28 5.24 16 23 N -0.58 -10.85 11.19 -204.00 -2.28 -13.13 16 24 C 0.19 3.57 13.03 180.76 2.36 5.92 16 25 N -0.35 -7.21 12.56 -61.24 -0.77 -7.98 16 26 C -0.09 -1.82 9.68 22.23 0.22 -1.60 16 27 C -0.08 -2.18 9.60 22.53 0.22 -1.96 16 28 H 0.05 1.85 5.63 -2.38 -0.01 1.83 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.64 7.88 -2.39 -0.02 1.62 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.05 2.41 5.64 -2.39 -0.01 2.40 16 33 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16 34 H 0.40 14.54 6.56 -92.71 -0.61 13.93 16 35 H 0.13 2.96 6.41 -2.91 -0.02 2.94 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.16 -0.30 8.03 -2.39 -0.02 -0.32 16 38 H 0.11 0.57 8.08 -2.39 -0.02 0.55 16 39 H 0.26 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.23 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.12 3.60 7.65 -2.91 -0.02 3.58 16 Total: -1.00 -78.71 351.05 3.65 -75.06 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.29 Total: 21.00 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 7.92 Total: -8.85 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -6.30 Total: -113.30 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.81 Total: 52.48 kcal Total: -78.71 3.65 -75.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.167 kcal (2) G-P(sol) polarization free energy of solvation -78.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds