Wall clock time and date at job start Tue Mar 31 2020 10:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47185 * 2 1 4 4 H 1.08998 * 109.47228 * 55.00435 * 3 2 1 5 5 C 1.50705 * 109.46921 * 175.00465 * 3 2 1 6 6 H 1.08001 * 119.99941 * 119.99943 * 5 3 2 7 7 C 1.37873 * 119.99630 * 299.99784 * 5 3 2 8 8 N 1.31516 * 120.00042 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00203 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47008 * 90.00303 * 9 7 5 11 11 H 1.48499 * 109.47281 * 210.00072 * 9 7 5 12 12 H 1.48497 * 109.47321 * 330.00149 * 9 7 5 13 13 N 1.46498 * 109.46932 * 294.99956 * 3 2 1 14 14 C 1.34777 * 120.00073 * 85.00618 * 13 3 2 15 15 O 1.21612 * 119.99776 * 359.97438 * 14 13 3 16 16 C 1.47314 * 120.00314 * 179.97438 * 14 13 3 17 17 C 1.37920 * 126.80280 * 359.97438 * 16 14 13 18 18 N 1.34193 * 107.89067 * 180.02562 * 17 16 14 19 19 C 1.46499 * 125.16354 * 179.97438 * 18 17 16 20 20 N 1.39775 * 109.66809 * 359.76703 * 18 17 16 21 21 C 1.31367 * 109.06968 * 0.39584 * 20 18 17 22 22 C 1.48264 * 126.51134 * 179.88442 * 21 20 18 23 23 C 1.39817 * 120.91138 * 324.68916 * 22 21 20 24 24 C 1.37960 * 119.01806 * 180.02562 * 23 22 21 25 25 N 1.31934 * 120.88641 * 359.97438 * 24 23 22 26 26 C 1.31931 * 122.01595 * 0.02562 * 25 24 23 27 27 C 1.37962 * 120.88324 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46612 * 300.00055 * 1 2 3 29 29 H 1.09006 * 109.46932 * 59.99630 * 1 2 3 30 30 H 1.08995 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46612 * 239.99944 * 2 1 3 32 32 H 1.08998 * 109.47185 * 120.00186 * 2 1 3 33 33 H 0.97001 * 120.00410 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00221 * 264.99561 * 13 3 2 35 35 H 1.07998 * 126.05127 * 0.02562 * 17 16 14 36 36 H 1.08996 * 109.47427 * 90.00055 * 19 18 17 37 37 H 1.09006 * 109.46988 * 209.99664 * 19 18 17 38 38 H 1.08993 * 109.47650 * 329.99517 * 19 18 17 39 39 H 1.07994 * 120.48547 * 0.02562 * 23 22 21 40 40 H 1.08001 * 119.55602 * 179.97438 * 24 23 22 41 41 H 1.07994 * 119.55517 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.48989 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6525 7 6 4.1434 0.8783 1.2278 8 7 5.4540 0.8802 1.3361 9 14 3.0965 0.1088 2.5700 10 1 2.8757 -1.3273 2.2633 11 1 3.7937 0.2346 3.8750 12 1 1.7878 0.8072 2.6386 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6320 -0.4318 16 6 0.0457 3.3235 -2.6255 17 6 0.8105 3.4424 -3.7671 18 7 0.0877 4.1097 -4.6799 19 6 0.5396 4.4459 -6.0323 20 7 -1.1635 4.4310 -4.1459 21 6 -1.2316 3.9835 -2.9127 22 6 -2.3837 4.1153 -1.9888 23 6 -3.1866 5.2598 -2.0007 24 6 -4.2485 5.3415 -1.1237 25 7 -4.5098 4.3587 -0.2832 26 6 -3.7774 3.2623 -0.2396 27 6 -2.6970 3.0984 -1.0817 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8772 0.4824 2.1131 34 1 2.2720 2.1231 -1.9978 35 1 1.8134 3.0653 -3.9023 36 1 0.2709 3.6406 -6.7159 37 1 0.0622 5.3711 -6.3553 38 1 1.6216 4.5763 -6.0319 39 1 -2.9787 6.0679 -2.6864 40 1 -4.8741 6.2218 -1.1252 41 1 -4.0270 2.4826 0.4647 42 1 -2.1015 2.1984 -1.0404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:46 Heat of formation + Delta-G solvation = 85.087033 kcal Electronic energy + Delta-G solvation = -26092.719762 eV Core-core repulsion = 22460.979489 eV Total energy + Delta-G solvation = -3631.740272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28515 -39.69150 -38.85528 -35.37222 -34.12805 -32.58905 -31.96121 -31.49886 -31.10899 -30.09058 -27.59797 -26.92100 -24.07822 -23.31940 -22.81013 -22.31318 -20.70419 -20.00744 -19.49016 -18.04029 -16.95302 -16.24024 -16.07605 -15.80347 -15.67339 -15.56163 -15.37497 -14.58449 -14.26557 -13.98815 -13.73229 -13.54834 -13.33289 -13.11990 -13.01775 -12.87050 -12.56333 -12.32712 -11.94200 -11.81173 -11.53691 -11.18290 -10.95662 -10.90959 -10.62171 -10.30155 -9.94122 -9.64758 -9.41818 -9.25971 -9.22436 -9.12631 -8.80831 -8.76052 -8.51307 -8.03944 -6.23253 -4.25851 0.93791 1.35120 1.52025 2.15446 2.37790 3.22558 3.35279 3.39994 3.83764 3.90070 4.00274 4.17747 4.30265 4.39840 4.59242 4.64145 4.83199 4.94334 5.08889 5.10986 5.15604 5.29517 5.31590 5.43508 5.57382 5.77019 5.90628 5.94243 6.01584 6.04276 6.17213 6.32464 6.47727 6.63051 6.66847 6.70272 6.83181 6.84293 6.95138 7.25323 7.30264 7.40145 7.50484 8.09538 8.14899 8.51098 8.73800 8.95124 9.37912 10.88770 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.004557 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.371601 B = 6142.494135 C = 7763.248716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.696 5.696 14 C 0.580 3.420 15 O -0.544 6.544 16 C -0.265 4.265 17 C 0.099 3.901 18 N -0.366 5.366 19 C 0.097 3.903 20 N -0.282 5.282 21 C 0.158 3.842 22 C 0.021 3.979 23 C -0.146 4.146 24 C 0.081 3.919 25 N -0.482 5.482 26 C 0.088 3.912 27 C -0.100 4.100 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.390 0.610 35 H 0.188 0.812 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 5.569 -13.547 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.343 5.343 14 C 0.366 3.634 15 O -0.424 6.424 16 C -0.280 4.280 17 C -0.049 4.049 18 N -0.146 5.146 19 C -0.044 4.044 20 N -0.103 5.103 21 C -0.010 4.010 22 C 0.011 3.989 23 C -0.167 4.167 24 C -0.075 4.075 25 N -0.192 5.192 26 C -0.068 4.068 27 C -0.121 4.121 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.223 0.777 35 H 0.205 0.795 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.174 0.826 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.409 6.222 -13.299 19.884 hybrid contribution 1.449 -0.924 0.214 1.732 sum -11.960 5.297 -13.085 18.502 Atomic orbital electron populations 1.21897 0.96950 0.99066 1.02276 1.22280 0.94426 0.99919 1.01050 1.19151 0.95557 0.88454 0.82729 0.93087 1.21037 0.88639 1.39810 1.07842 0.90315 1.24826 0.94852 0.95122 0.97664 1.69864 1.08726 1.44526 1.29840 0.86904 0.81047 0.79930 0.80876 1.20258 1.22225 1.18318 1.46024 1.14442 1.55915 1.17896 1.17099 0.82478 0.78151 0.85653 1.90697 1.50924 1.60888 1.39893 1.21564 0.95630 1.13938 0.96836 1.23054 0.98152 0.94853 0.88816 1.48103 1.10703 1.43142 1.12666 1.21988 1.00947 1.03010 0.78426 1.77293 0.99319 1.23710 1.09957 1.21630 0.92836 0.95569 0.90975 1.17957 0.91685 0.94928 0.94323 1.22133 0.96100 0.98006 1.00428 1.22525 0.95640 0.97348 0.92024 1.67569 1.29514 1.01236 1.20845 1.22673 0.91537 0.95125 0.97488 1.22715 0.95764 1.00757 0.92866 0.92676 0.92905 0.95007 0.92393 0.92804 0.92286 0.77674 0.79468 0.90334 0.89020 0.88872 0.84952 0.82921 0.82598 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.51 37.16 0.32 -2.41 16 2 C -0.14 -2.92 5.11 -26.73 -0.14 -3.06 16 3 C 0.24 5.52 1.83 -69.08 -0.13 5.39 16 4 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 5 C -0.54 -13.93 9.31 -34.44 -0.32 -14.25 16 6 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 9 Si 0.88 21.31 24.41 -169.99 -4.15 17.16 16 10 H -0.28 -6.45 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.70 -12.94 5.01 -56.05 -0.28 -13.22 16 14 C 0.58 10.49 6.28 -12.57 -0.08 10.41 16 15 O -0.54 -10.96 9.60 5.27 0.05 -10.91 16 16 C -0.26 -4.05 6.28 -102.95 -0.65 -4.70 16 17 C 0.10 1.15 10.94 -16.64 -0.18 0.97 16 18 N -0.37 -4.04 3.96 -67.65 -0.27 -4.31 16 19 C 0.10 0.57 11.40 59.85 0.68 1.25 16 20 N -0.28 -3.95 12.49 34.57 0.43 -3.52 16 21 C 0.16 2.43 6.98 -80.57 -0.56 1.87 16 22 C 0.02 0.33 5.76 -104.59 -0.60 -0.28 16 23 C -0.15 -1.94 9.88 -39.09 -0.39 -2.32 16 24 C 0.08 1.04 11.17 -17.61 -0.20 0.85 16 25 N -0.48 -7.07 10.35 -13.35 -0.14 -7.20 16 26 C 0.09 1.28 11.17 -17.61 -0.20 1.08 16 27 C -0.10 -1.55 7.90 -39.09 -0.31 -1.86 16 28 H 0.05 1.09 7.84 -51.93 -0.41 0.69 16 29 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.05 1.21 3.21 -51.93 -0.17 1.05 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.39 6.26 7.49 -40.82 -0.31 5.96 16 35 H 0.19 1.52 7.48 -52.49 -0.39 1.13 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.33 8.13 -51.93 -0.42 -0.09 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.16 2.63 5.74 -52.49 -0.30 2.33 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -33.29 343.41 -6.44 -39.74 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.20 Total: 7.23 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.84 Total: -4.99 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.52 Total: -53.39 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.05 Total: -10.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.29 -6.44 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.824 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds