Wall clock time and date at job start Tue Mar 31 2020 10:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47185 * 2 1 4 4 H 1.08998 * 109.47228 * 55.00435 * 3 2 1 5 5 C 1.50705 * 109.46921 * 175.00465 * 3 2 1 6 6 H 1.08001 * 119.99941 * 119.99943 * 5 3 2 7 7 C 1.37873 * 119.99630 * 299.99784 * 5 3 2 8 8 N 1.31516 * 120.00042 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00203 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47008 * 90.00303 * 9 7 5 11 11 H 1.48499 * 109.47281 * 210.00072 * 9 7 5 12 12 H 1.48497 * 109.47321 * 330.00149 * 9 7 5 13 13 N 1.46498 * 109.46932 * 294.99956 * 3 2 1 14 14 C 1.34777 * 120.00073 * 85.00618 * 13 3 2 15 15 O 1.21612 * 119.99776 * 359.97438 * 14 13 3 16 16 C 1.47314 * 120.00314 * 179.97438 * 14 13 3 17 17 C 1.37920 * 126.80280 * 359.97438 * 16 14 13 18 18 N 1.34193 * 107.89067 * 180.02562 * 17 16 14 19 19 C 1.46499 * 125.16354 * 179.97438 * 18 17 16 20 20 N 1.39775 * 109.66809 * 359.76703 * 18 17 16 21 21 C 1.31367 * 109.06968 * 0.39584 * 20 18 17 22 22 C 1.48264 * 126.51134 * 179.88442 * 21 20 18 23 23 C 1.39817 * 120.91138 * 324.68916 * 22 21 20 24 24 C 1.37960 * 119.01806 * 180.02562 * 23 22 21 25 25 N 1.31934 * 120.88641 * 359.97438 * 24 23 22 26 26 C 1.31931 * 122.01595 * 0.02562 * 25 24 23 27 27 C 1.37962 * 120.88324 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46612 * 300.00055 * 1 2 3 29 29 H 1.09006 * 109.46932 * 59.99630 * 1 2 3 30 30 H 1.08995 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46612 * 239.99944 * 2 1 3 32 32 H 1.08998 * 109.47185 * 120.00186 * 2 1 3 33 33 H 0.97001 * 120.00410 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00221 * 264.99561 * 13 3 2 35 35 H 1.07998 * 126.05127 * 0.02562 * 17 16 14 36 36 H 1.08996 * 109.47427 * 90.00055 * 19 18 17 37 37 H 1.09006 * 109.46988 * 209.99664 * 19 18 17 38 38 H 1.08993 * 109.47650 * 329.99517 * 19 18 17 39 39 H 1.07994 * 120.48547 * 0.02562 * 23 22 21 40 40 H 1.08001 * 119.55602 * 179.97438 * 24 23 22 41 41 H 1.07994 * 119.55517 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.48989 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6525 7 6 4.1434 0.8783 1.2278 8 7 5.4540 0.8802 1.3361 9 14 3.0965 0.1088 2.5700 10 1 2.8757 -1.3273 2.2633 11 1 3.7937 0.2346 3.8750 12 1 1.7878 0.8072 2.6386 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6320 -0.4318 16 6 0.0457 3.3235 -2.6255 17 6 0.8105 3.4424 -3.7671 18 7 0.0877 4.1097 -4.6799 19 6 0.5396 4.4459 -6.0323 20 7 -1.1635 4.4310 -4.1459 21 6 -1.2316 3.9835 -2.9127 22 6 -2.3837 4.1153 -1.9888 23 6 -3.1866 5.2598 -2.0007 24 6 -4.2485 5.3415 -1.1237 25 7 -4.5098 4.3587 -0.2832 26 6 -3.7774 3.2623 -0.2396 27 6 -2.6970 3.0984 -1.0817 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8772 0.4824 2.1131 34 1 2.2720 2.1231 -1.9978 35 1 1.8134 3.0653 -3.9023 36 1 0.2709 3.6406 -6.7159 37 1 0.0622 5.3711 -6.3553 38 1 1.6216 4.5763 -6.0319 39 1 -2.9787 6.0679 -2.6864 40 1 -4.8741 6.2218 -1.1252 41 1 -4.0270 2.4826 0.4647 42 1 -2.1015 2.1984 -1.0404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:44 Heat of formation + Delta-G solvation = 61.577019 kcal Electronic energy + Delta-G solvation = -26093.739232 eV Core-core repulsion = 22460.979489 eV Total energy + Delta-G solvation = -3632.759743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30387 -40.73793 -40.30226 -37.01538 -35.12085 -34.37163 -33.49940 -32.58415 -32.17068 -31.24220 -29.30245 -27.82586 -25.30845 -24.43457 -24.36480 -23.54506 -22.07926 -21.12941 -20.94781 -19.39765 -18.41326 -17.55292 -17.34909 -17.06940 -16.86457 -16.70950 -16.47074 -15.88482 -15.86459 -15.15895 -14.95389 -14.87649 -14.64882 -14.43296 -14.02974 -13.79167 -13.74525 -13.61748 -13.45364 -13.40968 -12.91785 -12.72929 -12.56321 -12.36894 -12.01399 -11.80018 -11.34773 -11.29682 -11.17717 -10.82876 -10.73980 -10.40777 -10.18060 -9.94349 -9.73595 -9.44841 -8.34962 -6.39368 -0.15236 0.29061 0.52595 1.23407 1.29629 1.37678 1.38564 1.47829 2.29138 2.51112 2.55648 2.93532 3.02179 3.14770 3.48326 3.61409 3.91789 4.04178 4.17296 4.24157 4.26660 4.31032 4.38810 4.40772 4.45821 4.52908 4.58993 4.72277 4.73073 4.84299 4.93188 4.99269 5.08633 5.19871 5.24512 5.30281 5.42296 5.47184 5.59632 5.72845 5.79767 5.83776 6.19743 6.38886 6.62842 6.99464 7.03138 7.24733 7.57346 8.79998 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.004557 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.371601 B = 6142.494135 C = 7763.248716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.254 3.746 4 H 0.023 0.977 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.031 3.969 8 N -0.935 5.935 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.298 1.298 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.581 3.419 15 O -0.569 6.569 16 C -0.302 4.302 17 C 0.124 3.876 18 N -0.355 5.355 19 C 0.084 3.916 20 N -0.295 5.295 21 C 0.143 3.857 22 C 0.004 3.996 23 C -0.146 4.146 24 C 0.084 3.916 25 N -0.499 5.499 26 C 0.080 3.920 27 C -0.115 4.115 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.269 0.731 34 H 0.403 0.597 35 H 0.225 0.775 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.150 0.850 40 H 0.188 0.812 41 H 0.170 0.830 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 5.958 -15.511 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.149 3.851 4 H 0.040 0.960 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.168 4.168 8 N -0.574 5.574 9 Si 0.761 3.239 10 H -0.186 1.186 11 H -0.225 1.225 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.370 3.630 15 O -0.451 6.451 16 C -0.317 4.317 17 C -0.026 4.026 18 N -0.134 5.134 19 C -0.054 4.054 20 N -0.116 5.116 21 C -0.024 4.024 22 C -0.006 4.006 23 C -0.167 4.167 24 C -0.073 4.073 25 N -0.209 5.209 26 C -0.075 4.075 27 C -0.136 4.136 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.238 0.762 35 H 0.242 0.758 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.168 0.832 40 H 0.205 0.795 41 H 0.187 0.813 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.320 6.623 -15.319 21.990 hybrid contribution 1.748 -0.919 0.635 2.074 sum -12.572 5.703 -14.683 20.154 Atomic orbital electron populations 1.21771 0.95135 1.00422 1.01758 1.22195 0.95967 0.98449 1.00871 1.18745 0.93039 0.89558 0.83760 0.95955 1.21303 0.90414 1.38173 1.06843 0.92292 1.25493 0.95612 0.95975 0.99768 1.69969 1.10232 1.46373 1.30811 0.86091 0.79466 0.79994 0.78389 1.18636 1.22528 1.18369 1.45770 1.15272 1.56376 1.16980 1.17424 0.81645 0.77498 0.86457 1.90689 1.51519 1.61663 1.41191 1.21320 0.96951 1.16443 0.97002 1.23521 0.98816 0.92834 0.87435 1.48564 1.09507 1.41404 1.13936 1.22492 1.02924 1.04048 0.75970 1.77241 1.00995 1.23959 1.09374 1.21706 0.92970 0.96208 0.91549 1.18228 0.92274 0.95541 0.94528 1.22355 0.95808 0.97798 1.00733 1.23106 0.95556 0.97750 0.90845 1.67638 1.29851 1.01692 1.21693 1.22898 0.91358 0.95693 0.97576 1.22609 0.96361 1.00691 0.93988 0.94146 0.92563 0.92598 0.91340 0.94077 0.92224 0.76212 0.75839 0.88527 0.88283 0.85806 0.83228 0.79517 0.81292 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.51 71.98 0.61 -4.30 16 2 C -0.14 -5.64 5.11 30.60 0.16 -5.48 16 3 C 0.25 11.47 1.83 44.25 0.08 11.55 16 4 H 0.02 1.15 6.64 -2.39 -0.02 1.14 16 5 C -0.53 -27.80 9.31 25.60 0.24 -27.56 16 6 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 7 C 0.03 1.72 5.45 84.65 0.46 2.18 16 8 N -0.93 -55.12 13.96 21.45 0.30 -54.82 16 9 Si 0.93 44.23 24.41 68.60 1.67 45.91 16 10 H -0.26 -11.63 6.83 99.48 0.68 -10.95 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.26 -12.20 6.53 99.48 0.65 -11.55 16 13 N -0.70 -25.56 5.01 -449.48 -2.25 -27.81 16 14 C 0.58 20.94 6.28 86.63 0.54 21.49 16 15 O -0.57 -23.37 9.60 -4.07 -0.04 -23.41 16 16 C -0.30 -8.95 6.28 -18.78 -0.12 -9.07 16 17 C 0.12 2.55 10.94 84.26 0.92 3.47 16 18 N -0.36 -6.76 3.96 -367.95 -1.46 -8.22 16 19 C 0.08 0.66 11.40 127.77 1.46 2.11 16 20 N -0.29 -7.71 12.49 -44.54 -0.56 -8.26 16 21 C 0.14 4.30 6.98 44.07 0.31 4.61 16 22 C 0.00 0.14 5.76 -19.85 -0.11 0.02 16 23 C -0.15 -3.74 9.88 22.59 0.22 -3.51 16 24 C 0.08 2.03 11.17 84.61 0.95 2.98 16 25 N -0.50 -14.28 10.35 -196.14 -2.03 -16.31 16 26 C 0.08 2.35 11.17 84.61 0.95 3.30 16 27 C -0.12 -3.66 7.90 22.59 0.18 -3.48 16 28 H 0.04 1.59 7.84 -2.38 -0.02 1.57 16 29 H 0.06 2.02 5.64 -2.38 -0.01 2.01 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.04 1.80 3.21 -2.39 -0.01 1.80 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.40 12.47 7.49 -92.71 -0.69 11.77 16 35 H 0.23 2.73 7.48 -2.91 -0.02 2.71 16 36 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.12 0.27 8.13 -2.39 -0.02 0.25 16 39 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.14 4.96 5.74 -2.91 -0.02 4.95 16 Total: -1.00 -73.76 343.41 2.77 -70.99 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.29 Total: 23.64 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 6.84 Total: -1.70 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -5.99 Total: -115.43 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.41 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.91 kcal Total: -73.76 2.77 -70.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.571 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds