Wall clock time and date at job start Tue Mar 31 2020 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 N 1.46503 * 109.47285 * 120.00010 * 2 1 3 5 5 C 1.46496 * 119.99931 * 122.05222 * 4 2 1 6 6 C 1.50706 * 109.47125 * 270.00178 * 5 4 2 7 7 H 1.08006 * 119.99769 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99890 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00376 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46955 * 90.00181 * 10 8 6 12 12 H 1.48498 * 109.47452 * 210.00335 * 10 8 6 13 13 H 1.48495 * 109.46941 * 330.00295 * 10 8 6 14 14 C 1.34774 * 119.99468 * 302.05262 * 4 2 1 15 15 O 1.21574 * 119.99661 * 211.55456 * 14 4 2 16 16 C 1.47665 * 120.00509 * 31.56569 * 14 4 2 17 17 C 1.40230 * 120.50007 * 137.94628 * 16 14 4 18 18 C 1.38031 * 118.35499 * 179.97438 * 17 16 14 19 19 C 1.39159 * 119.25637 * 0.02562 * 18 17 16 20 20 N 1.39492 * 119.53032 * 179.97438 * 19 18 17 21 21 C 1.35909 * 126.10627 * 180.02562 * 20 19 18 22 22 C 1.35242 * 107.60751 * 179.73099 * 21 20 19 23 23 C 1.40010 * 107.96772 * 0.37419 * 22 21 20 24 24 N 1.30790 * 108.37490 * 359.61983 * 23 22 21 25 25 N 1.32441 * 120.94129 * 0.25466 * 19 18 17 26 26 C 1.31637 * 121.80324 * 359.46920 * 25 19 18 27 27 H 1.08995 * 109.47445 * 253.61892 * 1 2 3 28 28 H 1.08999 * 109.47117 * 13.62801 * 1 2 3 29 29 H 1.09004 * 109.46891 * 133.62043 * 1 2 3 30 30 H 1.09007 * 109.47528 * 240.00177 * 2 1 3 31 31 H 1.08995 * 109.47350 * 223.22178 * 3 2 1 32 32 H 1.09003 * 109.47173 * 343.21866 * 3 2 1 33 33 H 1.08995 * 109.47074 * 103.22187 * 3 2 1 34 34 H 1.08996 * 109.47278 * 30.00190 * 5 4 2 35 35 H 1.08996 * 109.46815 * 150.00280 * 5 4 2 36 36 H 0.97003 * 120.00074 * 179.97438 * 9 8 6 37 37 H 1.08000 * 120.82026 * 359.95821 * 17 16 14 38 38 H 1.07995 * 120.37125 * 179.97438 * 18 17 16 39 39 H 1.08005 * 126.20253 * 359.97438 * 21 20 19 40 40 H 1.08001 * 126.02184 * 180.24477 * 22 21 20 41 41 H 1.07998 * 125.80833 * 179.88428 * 23 22 21 42 42 H 1.08000 * 119.68235 * 180.27116 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8973 -1.8549 1.0622 6 6 2.0633 -3.1079 0.9869 7 1 0.9863 -3.0434 1.0345 8 6 2.6754 -4.3366 0.8582 9 7 1.9476 -5.4301 0.7930 10 14 4.5382 -4.4483 0.7765 11 1 5.0858 -4.5971 2.1489 12 1 4.9283 -5.6243 -0.0422 13 1 5.0815 -3.2125 0.1581 14 6 1.6590 -0.2547 2.4198 15 8 2.4206 -0.3829 3.3586 16 6 0.3400 0.3783 2.6202 17 6 -0.4319 0.0724 3.7502 18 6 -1.6579 0.6903 3.8935 19 6 -2.0846 1.5886 2.9201 20 7 -3.3228 2.2159 3.0589 21 6 -3.8688 3.1106 2.1938 22 6 -5.0742 3.4739 2.6876 23 6 -5.2709 2.7901 3.8934 24 7 -4.2258 2.0355 4.1147 25 7 -1.3344 1.8524 1.8611 26 6 -0.1570 1.2898 1.6875 27 1 -0.3634 -0.2898 0.9859 28 1 -0.3633 0.9987 -0.2421 29 1 -0.3633 -0.7090 -0.7440 30 1 1.8934 -0.5138 -0.8900 31 1 2.8671 1.5355 -0.7037 32 1 1.2335 2.1131 -0.2967 33 1 2.3827 1.7067 1.0004 34 1 3.4916 -1.7589 0.1536 35 1 3.5601 -1.9110 1.9257 36 1 2.3782 -6.2946 0.7021 37 1 -0.0762 -0.6295 4.4899 38 1 -2.2793 0.4783 4.7509 39 1 -3.4227 3.4643 1.2759 40 1 -5.7631 4.1706 2.2331 41 1 -6.1397 2.8689 4.5301 42 1 0.4283 1.5331 0.8131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726532762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:29 Heat of formation + Delta-G solvation = 158.253254 kcal Electronic energy + Delta-G solvation = -26208.495042 eV Core-core repulsion = 22579.927495 eV Total energy + Delta-G solvation = -3628.567547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.00329 -42.18387 -40.11644 -38.14796 -35.61803 -34.58911 -34.00408 -33.00583 -31.47773 -30.74636 -29.69225 -28.14719 -26.07271 -25.24931 -24.19481 -23.33207 -22.30603 -21.80335 -20.22807 -19.55448 -19.11569 -18.27090 -17.83236 -17.06351 -16.81190 -16.66320 -16.42203 -16.08389 -15.65352 -15.48384 -14.93451 -14.79949 -14.59654 -14.50995 -14.26383 -13.90772 -13.87770 -13.67579 -13.36812 -13.28390 -13.25936 -12.74828 -12.44808 -12.32532 -11.99248 -11.90113 -11.84694 -11.73190 -11.32138 -11.25610 -10.92597 -10.84813 -10.63790 -10.11481 -9.46920 -9.15962 -8.35589 -6.42028 -0.73051 0.02646 0.87043 1.02757 1.33773 1.37108 1.45562 1.51277 1.83673 2.12108 2.29942 2.57335 2.98697 3.04779 3.36999 3.38298 3.57334 3.75601 3.83365 3.99440 4.04876 4.07400 4.17676 4.36883 4.40437 4.49274 4.58452 4.68834 4.75402 4.78529 4.80942 4.85490 4.93887 4.94975 5.04606 5.09577 5.17009 5.29951 5.42626 5.59166 5.62584 5.98204 6.22100 6.23365 6.54068 6.61010 6.71301 7.01032 7.24609 8.80630 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.003437 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.177622 B = 8143.987200 C = 8481.636821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.123 3.877 3 C -0.182 4.182 4 N -0.607 5.607 5 C 0.227 3.773 6 C -0.542 4.542 7 H 0.033 0.967 8 C 0.016 3.984 9 N -0.942 5.942 10 Si 0.944 3.056 11 H -0.277 1.277 12 H -0.277 1.277 13 H -0.236 1.236 14 C 0.578 3.422 15 O -0.570 6.570 16 C -0.237 4.237 17 C -0.006 4.006 18 C -0.193 4.193 19 C 0.385 3.615 20 N -0.343 5.343 21 C 0.062 3.938 22 C -0.255 4.255 23 C 0.069 3.931 24 N -0.326 5.326 25 N -0.525 5.525 26 C 0.178 3.822 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.269 0.731 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.200 0.800 40 H 0.191 0.809 41 H 0.229 0.771 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 21.264 -2.145 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.020 3.980 3 C -0.239 4.239 4 N -0.339 5.339 5 C 0.105 3.895 6 C -0.580 4.580 7 H 0.051 0.949 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.766 3.234 11 H -0.202 1.202 12 H -0.202 1.202 13 H -0.158 1.158 14 C 0.367 3.633 15 O -0.450 6.450 16 C -0.243 4.243 17 C -0.032 4.032 18 C -0.215 4.215 19 C 0.158 3.842 20 N -0.121 5.121 21 C -0.077 4.077 22 C -0.282 4.282 23 C -0.119 4.119 24 N -0.144 5.144 25 N -0.240 5.240 26 C 0.021 3.979 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.217 0.783 40 H 0.208 0.792 41 H 0.245 0.755 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.666 20.729 -1.534 22.924 hybrid contribution 0.455 -1.286 0.413 1.425 sum -9.211 19.444 -1.122 21.544 Atomic orbital electron populations 1.23717 0.95712 1.04124 1.02587 1.21477 0.93978 0.94346 0.88190 1.22733 1.04025 0.93542 1.03559 1.47781 1.50424 1.30630 1.05022 1.19443 0.89843 0.82469 0.97719 1.21599 0.93906 0.91450 1.51056 0.94877 1.25794 1.03774 0.94914 0.93824 1.70043 1.38072 0.98878 1.51192 0.85771 0.79276 0.79473 0.78832 1.20233 1.20206 1.15847 1.18127 0.85448 0.76904 0.82816 1.90679 1.53429 1.57412 1.43480 1.21065 0.97874 1.05414 0.99923 1.21544 0.91946 0.95091 0.94578 1.21398 0.97874 1.00144 1.02127 1.18058 0.84162 0.90506 0.91432 1.45855 1.13029 1.34272 1.18961 1.23502 0.95193 0.91832 0.97156 1.22140 0.98688 1.08806 0.98585 1.24944 0.96958 0.92556 0.97457 1.77485 1.02134 1.25961 1.08851 1.67118 1.06945 1.28668 1.21259 1.25001 0.90443 0.86590 0.95866 0.91850 0.86833 0.91812 0.87468 0.88628 0.87270 0.92787 0.92654 0.95951 0.92224 0.83940 0.82656 0.78304 0.79215 0.75481 0.74908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.53 7.73 71.98 0.56 -4.97 16 2 C 0.12 3.51 3.27 44.99 0.15 3.65 16 3 C -0.18 -3.55 8.35 71.98 0.60 -2.95 16 4 N -0.61 -24.19 2.38 -805.73 -1.92 -26.11 16 5 C 0.23 10.68 4.38 85.64 0.38 11.05 16 6 C -0.54 -30.71 9.94 25.60 0.25 -30.46 16 7 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 8 C 0.02 0.89 5.47 84.65 0.46 1.36 16 9 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 10 Si 0.94 43.16 27.47 68.60 1.88 45.04 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 13 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 14 C 0.58 24.10 5.91 86.73 0.51 24.62 16 15 O -0.57 -27.87 16.78 -3.95 -0.07 -27.93 16 16 C -0.24 -8.21 4.26 -19.98 -0.09 -8.29 16 17 C -0.01 -0.19 9.81 22.70 0.22 0.03 16 18 C -0.19 -5.83 9.68 22.44 0.22 -5.62 16 19 C 0.38 11.10 7.55 132.89 1.00 12.10 16 20 N -0.34 -8.84 3.80 -192.19 -0.73 -9.57 16 21 C 0.06 1.19 11.09 83.37 0.92 2.12 16 22 C -0.25 -3.63 10.80 22.01 0.24 -3.39 16 23 C 0.07 1.13 12.02 85.28 1.02 2.16 16 24 N -0.33 -8.08 11.81 -56.96 -0.67 -8.76 16 25 N -0.53 -14.00 9.79 -206.58 -2.02 -16.02 16 26 C 0.18 4.90 5.87 85.04 0.50 5.40 16 27 H 0.06 2.12 3.96 -12.10 -0.05 2.07 16 28 H 0.11 2.22 5.39 -2.39 -0.01 2.21 16 29 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.11 2.97 7.81 -2.38 -0.02 2.96 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.39 6.20 -2.39 -0.01 1.37 16 33 H 0.05 1.25 6.82 -2.39 -0.02 1.24 16 34 H 0.06 2.36 7.00 -2.39 -0.02 2.34 16 35 H 0.02 1.13 6.78 -2.39 -0.02 1.12 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 37 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.16 4.38 7.67 -2.91 -0.02 4.36 16 39 H 0.20 2.90 8.05 -2.91 -0.02 2.87 16 40 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.24 5.19 1.06 -4.29 0.00 5.18 16 Total: -1.00 -78.15 340.42 4.70 -73.46 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.97 Total: 21.02 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.95 Total: 6.80 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -5.04 Total: -118.39 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.07 Total: -27.93 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Total: -78.15 4.70 -73.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.709 kcal (2) G-P(sol) polarization free energy of solvation -78.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds