Wall clock time and date at job start Tue Mar 31 2020 10:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 N 1.46504 * 109.46918 * 119.99974 * 2 1 3 5 5 C 1.46499 * 119.99928 * 122.06105 * 4 2 1 6 6 C 1.50706 * 109.46922 * 270.00055 * 5 4 2 7 7 H 1.07997 * 119.99782 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99616 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00491 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99632 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47308 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47305 * 119.99782 * 10 8 6 13 13 H 1.48507 * 109.46903 * 239.99935 * 10 8 6 14 14 C 1.34777 * 119.99746 * 302.06169 * 4 2 1 15 15 O 1.21572 * 119.99690 * 211.56478 * 14 4 2 16 16 C 1.47659 * 120.00492 * 31.55988 * 14 4 2 17 17 C 1.40229 * 120.49697 * 137.93000 * 16 14 4 18 18 C 1.38021 * 118.35543 * 179.97438 * 17 16 14 19 19 C 1.39158 * 119.25723 * 0.02562 * 18 17 16 20 20 N 1.39490 * 119.52718 * 179.97438 * 19 18 17 21 21 C 1.37230 * 126.49590 * 185.28322 * 20 19 18 22 22 C 1.34597 * 106.82607 * 180.12012 * 21 20 19 23 23 N 1.34174 * 108.23219 * 359.61360 * 22 21 20 24 24 C 1.30460 * 109.38916 * 0.24866 * 23 22 21 25 25 N 1.32424 * 120.94035 * 0.24821 * 19 18 17 26 26 C 1.31637 * 121.80329 * 359.47958 * 25 19 18 27 27 H 1.08994 * 109.47019 * 253.61872 * 1 2 3 28 28 H 1.09003 * 109.46523 * 13.62155 * 1 2 3 29 29 H 1.09003 * 109.46832 * 133.61273 * 1 2 3 30 30 H 1.08997 * 109.47317 * 239.99723 * 2 1 3 31 31 H 1.09004 * 109.46765 * 223.21526 * 3 2 1 32 32 H 1.08997 * 109.47379 * 343.21640 * 3 2 1 33 33 H 1.08998 * 109.47088 * 103.21816 * 3 2 1 34 34 H 1.08994 * 109.47346 * 29.99639 * 5 4 2 35 35 H 1.08994 * 109.46986 * 150.00073 * 5 4 2 36 36 H 0.96994 * 119.99993 * 180.02562 * 9 8 6 37 37 H 1.08004 * 120.82080 * 359.96539 * 17 16 14 38 38 H 1.08002 * 120.36868 * 179.97438 * 18 17 16 39 39 H 1.08003 * 126.59209 * 359.96811 * 21 20 19 40 40 H 1.07994 * 125.88076 * 179.88062 * 22 21 20 41 41 H 1.07993 * 125.72552 * 180.02562 * 24 23 22 42 42 H 1.08007 * 119.68404 * 180.24173 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8974 -1.8549 1.0623 6 6 2.0635 -3.1079 0.9868 7 1 0.9865 -3.0434 1.0343 8 6 2.6757 -4.3366 0.8582 9 7 3.9872 -4.4151 0.8009 10 14 1.6421 -5.8898 0.7654 11 1 0.2032 -5.5329 0.8521 12 1 1.9040 -6.5826 -0.5218 13 1 1.9974 -6.7889 1.8927 14 6 1.6588 -0.2549 2.4199 15 8 2.4204 -0.3829 3.3587 16 6 0.3399 0.3781 2.6202 17 6 -0.4324 0.0718 3.7499 18 6 -1.6582 0.6895 3.8931 19 6 -2.0848 1.5883 2.9200 20 7 -3.3230 2.2154 3.0589 21 6 -3.9264 3.0419 2.1446 22 6 -5.1000 3.4252 2.6808 23 7 -5.2205 2.8458 3.8849 24 6 -4.1637 2.1190 4.1236 25 7 -1.3343 1.8525 1.8614 26 6 -0.1569 1.2900 1.6879 27 1 -0.3633 -0.2898 0.9859 28 1 -0.3632 0.9988 -0.2420 29 1 -0.3633 -0.7089 -0.7441 30 1 1.8934 -0.5139 -0.8899 31 1 2.8673 1.5354 -0.7037 32 1 1.2336 2.1130 -0.2967 33 1 2.3827 1.7067 1.0004 34 1 3.4918 -1.7588 0.1537 35 1 3.5602 -1.9109 1.9258 36 1 4.4178 -5.2795 0.7100 37 1 -0.0767 -0.6304 4.4894 38 1 -2.2798 0.4772 4.7504 39 1 -3.5338 3.3315 1.1810 40 1 -5.8222 4.0821 2.2192 41 1 -3.9865 1.5380 5.0165 42 1 0.4284 1.5333 0.8134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726533104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:32 Heat of formation + Delta-G solvation = 140.267061 kcal Electronic energy + Delta-G solvation = -26233.606391 eV Core-core repulsion = 22604.258904 eV Total energy + Delta-G solvation = -3629.347487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.48060 -42.56055 -40.13052 -38.14044 -35.81428 -34.91808 -33.98876 -33.05867 -31.39575 -30.38858 -29.21877 -28.13490 -26.18466 -25.29253 -24.53194 -23.35416 -22.40873 -21.92883 -20.23962 -19.89661 -18.68847 -18.16332 -17.84289 -17.02741 -16.97986 -16.77431 -16.45418 -16.03280 -15.56120 -15.45547 -15.07236 -14.92793 -14.70898 -14.49103 -14.29700 -14.05128 -13.88383 -13.66654 -13.35662 -13.27575 -13.22042 -12.79792 -12.59149 -12.28725 -12.15350 -11.93743 -11.68926 -11.42029 -11.27021 -11.19515 -10.99309 -10.67212 -10.62284 -9.73811 -9.50403 -9.30228 -8.24320 -6.40472 -0.71685 0.03738 1.00341 1.33762 1.36575 1.37978 1.48944 1.58801 2.06466 2.15681 2.37815 2.58953 3.02258 3.05577 3.38624 3.48899 3.58681 3.67150 3.76164 3.86612 4.00977 4.07637 4.17981 4.36432 4.41835 4.49459 4.51539 4.58740 4.74011 4.76659 4.85988 4.93714 5.03590 5.07007 5.10731 5.18154 5.19969 5.30106 5.55701 5.65866 5.83920 6.02361 6.03476 6.50661 6.61528 6.70096 6.91689 7.08015 7.32435 8.82245 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.003610 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.509223 B = 7755.350223 C = 8286.625059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.124 3.876 3 C -0.181 4.181 4 N -0.609 5.609 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.058 0.942 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.281 1.281 14 C 0.573 3.427 15 O -0.575 6.575 16 C -0.229 4.229 17 C -0.003 4.003 18 C -0.190 4.190 19 C 0.356 3.644 20 N -0.415 5.415 21 C -0.034 4.034 22 C -0.040 4.040 23 N -0.510 5.510 24 C 0.195 3.805 25 N -0.523 5.523 26 C 0.172 3.828 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.026 0.974 35 H 0.002 0.998 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.182 0.818 39 H 0.195 0.805 40 H 0.197 0.803 41 H 0.243 0.757 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 14.388 -0.602 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.021 3.979 3 C -0.238 4.238 4 N -0.341 5.341 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.076 0.924 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.197 1.197 13 H -0.207 1.207 14 C 0.362 3.638 15 O -0.455 6.455 16 C -0.235 4.235 17 C -0.029 4.029 18 C -0.212 4.212 19 C 0.129 3.871 20 N -0.098 5.098 21 C -0.163 4.163 22 C -0.183 4.183 23 N -0.227 5.227 24 C -0.086 4.086 25 N -0.237 5.237 26 C 0.015 3.985 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.199 0.801 39 H 0.212 0.788 40 H 0.214 0.786 41 H 0.259 0.741 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.422 14.874 -0.258 20.719 hybrid contribution 1.120 -2.014 0.083 2.306 sum -13.301 12.860 -0.175 18.502 Atomic orbital electron populations 1.23691 0.94983 1.04141 1.02939 1.21407 0.94388 0.93899 0.88249 1.22725 1.03791 0.94111 1.03190 1.48016 1.50263 1.30887 1.04947 1.18856 0.88983 0.81772 0.96116 1.21767 0.93546 0.92026 1.51060 0.92402 1.25814 0.96095 1.02415 0.94459 1.70053 1.09824 1.26272 1.50317 0.85407 0.78881 0.78783 0.77985 1.19036 1.19737 1.20721 1.18233 0.85739 0.77041 0.82813 1.90698 1.53687 1.57407 1.43687 1.21118 0.97512 1.04839 1.00052 1.21604 0.91910 0.95179 0.94159 1.21609 0.98236 0.99269 1.02067 1.18556 0.85289 0.91151 0.92087 1.43220 1.13415 1.36023 1.17103 1.23289 0.96115 0.98639 0.98280 1.22825 0.98132 1.04655 0.92716 1.70353 1.22940 1.11877 1.17525 1.26073 0.85979 1.02491 0.94061 1.67182 1.06740 1.27813 1.21916 1.24906 0.90695 0.86885 0.96035 0.91242 0.87227 0.91331 0.88238 0.89419 0.87234 0.93071 0.95606 0.98005 0.92336 0.83145 0.80107 0.78779 0.78639 0.74105 0.75738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.00 7.73 71.98 0.56 -4.44 16 2 C 0.12 3.60 3.27 44.99 0.15 3.74 16 3 C -0.18 -3.88 8.35 71.98 0.60 -3.28 16 4 N -0.61 -24.70 2.38 -805.74 -1.92 -26.61 16 5 C 0.26 13.54 5.32 85.64 0.46 14.00 16 6 C -0.55 -29.61 9.39 25.60 0.24 -29.37 16 7 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 10 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.57 23.36 5.91 86.73 0.51 23.87 16 15 O -0.57 -28.30 16.78 -3.94 -0.07 -28.37 16 16 C -0.23 -7.13 4.25 -19.99 -0.09 -7.22 16 17 C 0.00 -0.07 9.81 22.70 0.22 0.15 16 18 C -0.19 -3.89 9.48 22.44 0.21 -3.68 16 19 C 0.36 7.97 7.49 132.89 1.00 8.96 16 20 N -0.42 -8.51 2.98 -355.78 -1.06 -9.57 16 21 C -0.03 -0.66 11.16 83.01 0.93 0.27 16 22 C -0.04 -0.76 11.85 83.50 0.99 0.23 16 23 N -0.51 -11.30 11.24 -199.64 -2.24 -13.54 16 24 C 0.20 3.60 11.89 179.97 2.14 5.74 16 25 N -0.52 -12.30 9.83 -206.50 -2.03 -14.33 16 26 C 0.17 4.30 5.87 85.04 0.50 4.80 16 27 H 0.07 2.05 3.96 -12.03 -0.05 2.00 16 28 H 0.11 2.02 5.39 -2.39 -0.01 2.01 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.95 7.81 -2.39 -0.02 2.94 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.53 6.20 -2.39 -0.01 1.52 16 33 H 0.05 1.29 6.82 -2.39 -0.02 1.27 16 34 H 0.03 1.35 7.94 -2.39 -0.02 1.33 16 35 H 0.00 0.11 7.35 -2.39 -0.02 0.09 16 36 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.18 2.25 6.75 -2.91 -0.02 2.23 16 39 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.24 2.47 7.05 -2.91 -0.02 2.45 16 42 H 0.23 4.86 1.06 -4.25 0.00 4.86 16 Total: -1.00 -73.88 341.49 4.90 -68.98 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.03 Total: 17.24 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 8.88 Total: 14.90 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -6.97 Total: -117.61 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.07 Total: -28.37 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.88 4.90 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726533104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.248 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds