Wall clock time and date at job start Tue Mar 31 2020 10:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 N 1.46499 * 109.46877 * 119.99752 * 2 1 3 5 5 N 1.39895 * 125.74781 * 299.69587 * 4 2 1 6 6 C 1.30282 * 109.23802 * 179.80984 * 5 4 2 7 7 C 1.41497 * 108.18861 * 0.44122 * 6 5 4 8 8 C 1.46746 * 126.51880 * 179.69626 * 7 6 5 9 9 O 1.21694 * 120.00057 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00319 * 0.02758 * 8 7 6 11 11 C 1.39882 * 119.99838 * 174.88774 * 10 8 7 12 12 C 1.39295 * 119.95108 * 325.54796 * 11 10 8 13 13 C 1.38490 * 120.42670 * 179.76203 * 12 11 10 14 14 C 1.37689 * 120.32033 * 0.51070 * 13 12 11 15 15 C 1.40746 * 119.88666 * 359.74595 * 14 13 12 16 16 C 1.41410 * 120.20672 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00063 * 25.13831 * 16 15 14 18 18 C 1.39939 * 119.99758 * 205.13971 * 16 15 14 19 19 N 1.30828 * 120.00124 * 16.78132 * 18 16 15 20 20 Si 1.86806 * 119.99687 * 196.78729 * 18 16 15 21 21 H 1.48498 * 109.46964 * 60.00213 * 20 18 16 22 22 H 1.48496 * 109.46769 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47045 * 299.99677 * 20 18 16 24 24 C 1.38256 * 119.94323 * 145.81722 * 11 10 8 25 25 C 1.34848 * 125.74422 * 120.00174 * 4 2 1 26 26 N 1.38010 * 126.45046 * 0.02562 * 25 4 2 27 27 H 1.09001 * 109.47326 * 300.00313 * 1 2 3 28 28 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46957 * 60.00071 * 1 2 3 30 30 H 1.08992 * 109.47452 * 239.99816 * 2 1 3 31 31 H 1.09001 * 109.47342 * 59.99696 * 3 2 1 32 32 H 1.09000 * 109.47191 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46938 * 299.99946 * 3 2 1 34 34 H 1.08000 * 125.91233 * 180.20264 * 6 5 4 35 35 H 0.97000 * 119.99351 * 354.89879 * 10 8 7 36 36 H 1.07997 * 119.79343 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.84174 * 180.26196 * 13 12 11 38 38 H 1.07999 * 120.05668 * 179.76625 * 14 13 12 39 39 H 0.96999 * 119.99810 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.16027 * 359.96435 * 24 11 10 41 41 H 0.97004 * 119.99473 * 0.02562 * 26 25 4 42 42 H 0.97001 * 120.00358 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7604 -0.3154 2.5190 6 6 2.3463 -1.1545 3.3252 7 6 3.0269 -2.1170 2.5426 8 6 3.8239 -3.2434 3.0421 9 8 4.3616 -4.0032 2.2582 10 7 3.9603 -3.4364 4.3690 11 6 4.6292 -4.5686 4.8458 12 6 4.5305 -5.7759 4.1580 13 6 5.1926 -6.9017 4.6186 14 6 5.9478 -6.8422 5.7683 15 6 6.0525 -5.6306 6.4768 16 6 6.8268 -5.5617 7.6580 17 1 7.6389 -6.2567 7.8127 18 6 6.5408 -4.5931 8.6266 19 7 5.3876 -3.9754 8.6134 20 14 7.8058 -4.1818 9.9382 21 1 9.0469 -3.6863 9.2908 22 1 7.2634 -3.1313 10.8368 23 1 8.1126 -5.4005 10.7293 24 6 5.3828 -4.4890 6.0022 25 6 2.7968 -1.7915 1.2076 26 7 3.2760 -2.4684 0.1044 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.3206 -1.1192 4.4043 35 1 3.5945 -2.7903 4.9932 36 1 3.9365 -5.8336 3.2579 37 1 5.1128 -7.8318 4.0756 38 1 6.4593 -7.7237 6.1257 39 1 5.1892 -3.3042 9.2850 40 1 5.4570 -3.5543 6.5383 41 1 3.0572 -2.1575 -0.7880 42 1 3.8322 -3.2544 0.2214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837072310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:55 Heat of formation + Delta-G solvation = 33.198769 kcal Electronic energy + Delta-G solvation = -25217.103254 eV Core-core repulsion = 21583.112937 eV Total energy + Delta-G solvation = -3633.990316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.43023 -40.71423 -38.78231 -36.63035 -36.06811 -35.52608 -34.93121 -31.60593 -31.28290 -30.34777 -29.18749 -28.20975 -27.11746 -24.51555 -23.86652 -23.02513 -22.13862 -21.04684 -20.73369 -19.14280 -18.97457 -18.20433 -17.34553 -17.05363 -16.62047 -16.52448 -16.39692 -15.81927 -15.60878 -15.42544 -15.02825 -14.78201 -14.46500 -14.16381 -14.10647 -13.89065 -13.43172 -13.13216 -13.11646 -12.97959 -12.79235 -12.55051 -12.41086 -12.37150 -12.26957 -12.22343 -11.86563 -11.63799 -11.51997 -11.08144 -10.87126 -10.53892 -10.00974 -9.27283 -8.98421 -8.71269 -8.44938 -6.30522 0.68423 1.02694 1.11057 1.22193 1.33752 1.42186 1.52665 1.59318 2.25203 2.49595 2.56187 2.70385 2.84913 3.40700 3.77638 3.87239 3.92677 4.01337 4.09388 4.31293 4.47089 4.61867 4.68203 4.70533 4.79876 4.80318 4.82222 4.92599 5.17102 5.18148 5.22960 5.23682 5.30577 5.41892 5.43008 5.63461 5.87994 5.94158 6.09455 6.14754 6.24397 6.41065 6.50724 6.66165 6.81392 6.93683 6.99040 7.04645 7.46016 8.39162 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002984 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.757201 B = 9380.117286 C =10352.711729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 C -0.155 4.155 4 N -0.388 5.388 5 N -0.312 5.312 6 C 0.111 3.889 7 C -0.394 4.394 8 C 0.595 3.405 9 O -0.583 6.583 10 N -0.660 5.660 11 C 0.158 3.842 12 C -0.237 4.237 13 C -0.085 4.085 14 C -0.251 4.251 15 C 0.092 3.908 16 C -0.500 4.500 17 H 0.075 0.925 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.261 1.261 24 C -0.204 4.204 25 C 0.434 3.566 26 N -0.818 5.818 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.205 0.795 35 H 0.412 0.588 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.288 0.712 40 H 0.112 0.888 41 H 0.414 0.586 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 11.904 -15.859 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 C -0.213 4.213 4 N -0.177 5.177 5 N -0.130 5.130 6 C -0.080 4.080 7 C -0.414 4.414 8 C 0.388 3.612 9 O -0.465 6.465 10 N -0.303 5.303 11 C 0.064 3.936 12 C -0.258 4.258 13 C -0.103 4.103 14 C -0.271 4.271 15 C 0.089 3.911 16 C -0.530 4.530 17 H 0.093 0.907 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.185 1.185 24 C -0.226 4.226 25 C 0.197 3.803 26 N -0.369 5.369 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.222 0.778 35 H 0.248 0.752 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.246 0.754 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.756 12.721 -16.481 22.992 hybrid contribution 0.999 -0.688 0.897 1.509 sum -8.758 12.033 -15.583 21.548 Atomic orbital electron populations 1.22103 0.92280 1.02689 1.04217 1.21688 0.96501 0.94501 0.82636 1.22105 1.01156 0.93838 1.04224 1.48791 1.41115 1.21069 1.06729 1.76970 1.26195 1.23834 0.86010 1.24091 0.92716 0.90363 1.00785 1.19212 1.22375 1.08010 0.91797 1.17412 0.78819 0.83527 0.81420 1.90632 1.50664 1.48993 1.56225 1.43127 1.56217 1.23701 1.07263 1.17657 0.94909 0.86325 0.94659 1.20471 1.09594 0.92437 1.03285 1.20726 0.96640 0.97347 0.95629 1.21194 1.08358 0.97205 1.00349 1.17760 0.90434 0.90701 0.92204 1.19748 1.15289 1.15608 1.02312 0.90674 1.26687 0.96852 0.93718 1.00465 1.69848 1.21122 1.20472 1.33248 0.85284 0.78554 0.78926 0.77108 1.18880 1.19016 1.18520 1.21015 1.04339 0.99420 0.97847 1.18091 0.87713 0.85637 0.88834 1.41772 1.57309 1.33362 1.04450 0.92345 0.92933 0.87772 0.86361 0.92342 0.93002 0.87763 0.77823 0.75205 0.87797 0.86283 0.88188 0.90103 0.86981 0.75356 0.73743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.45 71.98 0.68 -1.10 16 2 C 0.15 1.92 3.67 44.99 0.17 2.09 16 3 C -0.16 -1.81 9.44 71.98 0.68 -1.13 16 4 N -0.39 -8.48 3.27 -323.33 -1.06 -9.53 16 5 N -0.31 -8.08 12.30 -56.22 -0.69 -8.77 16 6 C 0.11 2.99 11.50 85.73 0.99 3.98 16 7 C -0.39 -12.30 6.15 -19.99 -0.12 -12.42 16 8 C 0.60 23.09 7.52 86.47 0.65 23.74 16 9 O -0.58 -25.26 12.88 -4.33 -0.06 -25.32 16 10 N -0.66 -26.83 5.32 -307.14 -1.63 -28.47 16 11 C 0.16 7.77 6.25 38.12 0.24 8.01 16 12 C -0.24 -11.64 8.66 22.58 0.20 -11.44 16 13 C -0.08 -4.07 10.02 22.20 0.22 -3.85 16 14 C -0.25 -13.02 9.79 22.75 0.22 -12.79 16 15 C 0.09 5.14 5.57 -21.31 -0.12 5.02 16 16 C -0.50 -27.45 9.06 23.46 0.21 -27.24 16 17 H 0.08 3.99 7.90 -2.91 -0.02 3.96 16 18 C 0.04 1.91 5.16 85.25 0.44 2.35 16 19 N -0.82 -42.27 10.94 21.83 0.24 -42.04 16 20 Si 0.98 38.43 29.59 68.60 2.03 40.46 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 C -0.20 -10.98 8.60 22.85 0.20 -10.78 16 25 C 0.43 11.12 7.98 132.70 1.06 12.18 16 26 N -0.82 -16.36 9.03 -54.56 -0.49 -16.85 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.12 0.90 6.77 -2.39 -0.02 0.88 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.21 4.46 7.51 -2.91 -0.02 4.43 16 35 H 0.41 14.43 7.78 -92.71 -0.72 13.71 16 36 H 0.10 5.01 6.47 -2.91 -0.02 4.99 16 37 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.29 13.36 8.30 -92.71 -0.77 12.60 16 40 H 0.11 6.12 6.17 -2.91 -0.02 6.10 16 41 H 0.41 4.77 7.61 -92.71 -0.71 4.07 16 42 H 0.43 10.28 7.01 -92.71 -0.65 9.63 16 Total: -1.00 -70.52 353.93 3.06 -67.46 By element: Atomic # 1 Polarization: 47.43 SS G_CDS: -0.99 Total: 46.45 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 5.71 Total: -23.39 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.63 Total: -105.66 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.06 Total: -25.32 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -70.52 3.06 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.656 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds