Wall clock time and date at job start Tue Mar 31 2020 10:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46921 * 2 1 4 4 C 1.53004 * 109.47066 * 240.00448 * 2 1 3 5 5 O 1.45202 * 109.47418 * 120.00106 * 2 1 3 6 6 C 1.34222 * 116.99710 * 59.99862 * 5 2 1 7 7 O 1.20824 * 120.00580 * 0.02562 * 6 5 2 8 8 C 1.50698 * 119.99825 * 179.97438 * 6 5 2 9 9 C 1.53004 * 109.47505 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47386 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.27187 * 52.90747 * 10 9 8 12 12 C 1.54952 * 110.30709 * 174.99761 * 10 9 8 13 13 C 1.55308 * 100.93825 * 155.46169 * 12 10 9 14 14 H 1.09002 * 110.84945 * 84.05895 * 13 12 10 15 15 C 1.50701 * 110.84617 * 207.47527 * 13 12 10 16 16 O 1.21214 * 120.00071 * 357.22589 * 15 13 12 17 17 O 1.34308 * 119.99918 * 177.22705 * 15 13 12 18 18 C 1.34919 * 117.00075 * 179.97438 * 17 15 13 19 19 H 1.08001 * 119.99791 * 0.02562 * 18 17 15 20 20 C 1.38763 * 120.00264 * 180.02562 * 18 17 15 21 21 N 1.31435 * 119.99554 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47354 * 59.99864 * 22 20 18 24 24 H 1.48503 * 109.46546 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47052 * 299.99515 * 22 20 18 26 26 C 1.54388 * 102.43740 * 325.76522 * 13 12 10 27 27 O 1.43640 * 110.39409 * 290.76208 * 10 9 8 28 28 H 1.08999 * 109.46714 * 299.99535 * 1 2 3 29 29 H 1.08994 * 109.47377 * 59.99799 * 1 2 3 30 30 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46796 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47259 * 300.00273 * 3 2 1 33 33 H 1.09001 * 109.46848 * 60.00165 * 3 2 1 34 34 H 1.09000 * 109.47022 * 299.99689 * 4 2 1 35 35 H 1.09000 * 109.47019 * 59.99225 * 4 2 1 36 36 H 1.09002 * 109.47230 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.47206 * 60.00203 * 8 6 5 38 38 H 1.08999 * 109.47645 * 300.00280 * 8 6 5 39 39 H 1.08997 * 109.46968 * 59.99756 * 9 8 6 40 40 H 1.08999 * 109.46651 * 300.00587 * 9 8 6 41 41 H 1.09000 * 111.12405 * 37.54163 * 12 10 9 42 42 H 1.08998 * 111.15965 * 273.39088 * 12 10 9 43 43 H 0.97001 * 119.99704 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.82837 * 140.97647 * 26 13 12 45 45 H 1.09002 * 109.82598 * 261.94684 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9567 -2.5028 0.5078 8 6 2.1184 -2.7437 2.5434 9 6 1.5718 -4.1711 2.4739 10 6 2.0434 -4.9581 3.6983 11 1 1.7946 -4.4191 4.6124 12 6 1.3993 -6.3673 3.7125 13 6 2.4343 -7.1558 4.5605 14 1 2.2435 -7.0249 5.6257 15 6 2.4274 -8.6171 4.1924 16 8 1.6395 -9.0311 3.3695 17 8 3.2941 -9.4608 4.7762 18 6 3.2348 -10.7558 4.4021 19 1 2.5128 -11.0719 3.6637 20 6 4.1012 -11.6813 4.9661 21 7 4.9794 -11.2966 5.8651 22 14 4.0194 -13.4741 4.4475 23 1 4.2805 -13.5801 2.9895 24 1 5.0422 -14.2518 5.1920 25 1 2.6700 -14.0156 4.7494 26 6 3.7691 -6.4937 4.1560 27 8 3.4587 -5.1931 3.6276 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 1.7550 -2.2589 3.4495 38 1 3.2079 -2.7727 2.5589 39 1 1.9356 -4.6557 1.5679 40 1 0.4823 -4.1425 2.4582 41 1 1.3248 -6.7753 2.7045 42 1 0.4244 -6.3494 4.1997 43 1 5.5854 -11.9435 6.2590 44 1 4.4136 -6.3971 5.0297 45 1 4.2645 -7.0957 3.3943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884994959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:25 Heat of formation + Delta-G solvation = -249.577710 kcal Electronic energy + Delta-G solvation = -26186.544982 eV Core-core repulsion = 22168.398135 eV Total energy + Delta-G solvation = -4018.146846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.165 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87276 -41.46374 -40.06854 -38.16921 -37.29132 -35.19109 -34.56611 -34.31952 -33.34146 -30.15782 -28.38575 -28.29205 -27.64821 -25.93076 -24.64456 -22.85720 -21.90670 -21.16619 -20.54036 -19.90743 -18.64098 -18.24369 -17.95402 -17.42327 -17.25219 -16.95459 -16.34823 -16.28646 -16.11080 -15.46491 -15.34935 -15.11068 -14.71410 -14.57701 -14.30978 -14.20155 -13.71689 -13.38384 -13.33623 -13.10394 -13.08108 -12.96478 -12.88112 -12.85974 -12.63030 -12.45443 -12.35303 -12.20805 -12.15848 -12.13738 -12.04651 -11.94514 -11.80322 -11.37908 -11.12333 -10.94778 -10.72183 -10.50811 -8.56500 -6.36579 1.24717 1.27044 1.33013 1.48616 1.58871 1.72244 2.07106 2.52088 2.85482 2.94584 3.30780 3.63668 3.69336 3.77035 3.79356 3.86319 3.96059 3.99824 4.10256 4.28562 4.30441 4.40180 4.58134 4.59432 4.64760 4.67844 4.73324 4.75491 4.82316 4.84787 4.87398 4.87850 4.95287 5.02844 5.08970 5.13057 5.15780 5.25192 5.26866 5.30195 5.60041 5.79899 5.92095 6.60772 6.85228 6.88402 7.71177 8.63482 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.002089 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.094323 B =13401.692783 C =13551.779872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.357 6.357 6 C 0.462 3.538 7 O -0.530 6.530 8 C -0.107 4.107 9 C -0.101 4.101 10 C 0.087 3.913 11 H 0.113 0.887 12 C -0.129 4.129 13 C -0.104 4.104 14 H 0.137 0.863 15 C 0.403 3.597 16 O -0.580 6.580 17 O -0.238 6.238 18 C -0.424 4.424 19 H 0.080 0.920 20 C -0.002 4.002 21 N -0.899 5.899 22 Si 1.016 2.984 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.262 1.262 26 C 0.076 3.924 27 O -0.384 6.384 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.280 0.720 44 H 0.098 0.902 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 25.218 -6.259 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.068 3.932 3 C -0.193 4.193 4 C -0.239 4.239 5 O -0.275 6.275 6 C 0.307 3.693 7 O -0.420 6.420 8 C -0.144 4.144 9 C -0.138 4.138 10 C 0.030 3.970 11 H 0.131 0.869 12 C -0.166 4.166 13 C -0.124 4.124 14 H 0.154 0.846 15 C 0.251 3.749 16 O -0.478 6.478 17 O -0.146 6.146 18 C -0.500 4.500 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.535 5.535 22 Si 0.835 3.165 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.186 1.186 26 C -0.001 4.001 27 O -0.304 6.304 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.559 25.054 -6.678 26.518 hybrid contribution -0.181 -1.424 -0.409 1.493 sum -5.740 23.629 -7.088 25.328 Atomic orbital electron populations 1.22448 0.93829 1.03525 1.03817 1.22480 0.94740 0.93441 0.82503 1.21867 1.02320 0.90908 1.04208 1.22469 1.01696 1.01995 0.97720 1.86557 1.69859 1.25305 1.45753 1.24103 0.76684 0.80651 0.87834 1.90591 1.36631 1.70361 1.44375 1.21436 1.04423 0.93652 0.94891 1.21498 1.01891 0.93181 0.97260 1.23167 0.79883 0.94341 0.99615 0.86899 1.23236 0.99028 0.93824 1.00538 1.22486 0.98931 0.86536 1.04409 0.84561 1.23971 0.79787 0.90540 0.80649 1.90528 1.41675 1.79712 1.35912 1.83895 1.51987 1.19835 1.58863 1.21367 1.21651 0.80987 1.25984 0.90231 1.26511 0.93804 1.04842 0.95105 1.70052 1.19492 1.37593 1.26400 0.84713 0.79187 0.73756 0.78890 1.18804 1.18222 1.18613 1.22955 0.94658 0.83268 0.99181 1.88456 1.24271 1.32982 1.84656 0.91429 0.89399 0.92146 0.91387 0.88503 0.90971 0.92321 0.89283 0.91979 0.84739 0.86747 0.92527 0.88792 0.91494 0.87213 0.91079 0.88379 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 2 C 0.10 1.68 1.13 -10.79 -0.01 1.67 16 3 C -0.14 -1.40 8.85 71.98 0.64 -0.77 16 4 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 5 O -0.36 -6.99 9.89 -51.34 -0.51 -7.50 16 6 C 0.46 9.88 7.27 71.24 0.52 10.39 16 7 O -0.53 -14.04 11.48 21.97 0.25 -13.79 16 8 C -0.11 -1.82 5.75 29.85 0.17 -1.65 16 9 C -0.10 -2.13 4.24 30.59 0.13 -2.00 16 10 C 0.09 1.96 3.40 31.26 0.11 2.06 16 11 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 12 C -0.13 -3.73 5.67 32.05 0.18 -3.55 16 13 C -0.10 -3.66 3.49 -10.28 -0.04 -3.69 16 14 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 15 C 0.40 20.11 7.07 71.24 0.50 20.61 16 16 O -0.58 -32.00 14.96 20.76 0.31 -31.69 16 17 O -0.24 -13.88 9.75 14.90 0.15 -13.73 16 18 C -0.42 -25.79 9.65 67.95 0.66 -25.13 16 19 H 0.08 4.93 6.86 -2.91 -0.02 4.91 16 20 C 0.00 -0.10 5.49 84.88 0.47 0.37 16 21 N -0.90 -52.63 13.67 21.63 0.30 -52.34 16 22 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 C 0.08 2.51 7.43 72.45 0.54 3.05 16 27 O -0.38 -10.91 10.83 -148.98 -1.61 -12.52 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.26 5.89 -2.39 -0.01 1.24 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.33 5.89 -2.39 -0.01 1.32 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.96 7.99 -2.39 -0.02 1.94 16 39 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 40 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.07 2.33 7.34 -2.39 -0.02 2.32 16 42 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 45 H 0.05 1.89 7.81 -2.39 -0.02 1.87 16 Total: -1.00 -76.28 371.61 6.95 -69.33 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.98 Total: 20.08 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.07 Total: -3.31 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.30 Total: -52.34 kcal Atomic # 8 Polarization: -77.82 SS G_CDS: -1.41 Total: -79.24 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -76.28 6.95 -69.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884994959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.246 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds