Wall clock time and date at job start Tue Mar 31 2020 10:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46771 * 2 1 4 4 N 1.46504 * 109.47225 * 120.00136 * 2 1 3 5 5 C 1.39673 * 119.99569 * 305.58749 * 4 2 1 6 6 C 1.38901 * 120.07879 * 351.92350 * 5 4 2 7 7 C 1.38107 * 119.92508 * 179.77271 * 6 5 4 8 8 C 1.38283 * 120.07503 * 0.50466 * 7 6 5 9 9 C 1.38291 * 120.14901 * 359.74964 * 8 7 6 10 10 C 1.38102 * 120.07181 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.47029 * 239.99899 * 2 1 3 12 12 O 1.21311 * 120.00141 * 25.00365 * 11 2 1 13 13 N 1.34770 * 120.00023 * 204.99792 * 11 2 1 14 14 C 1.40597 * 120.00070 * 180.02562 * 13 11 2 15 15 C 1.40650 * 126.08223 * 359.69242 * 14 13 11 16 16 N 1.30906 * 108.38756 * 179.81464 * 15 14 13 17 17 N 1.40068 * 108.40726 * 0.44063 * 16 15 14 18 18 C 1.37327 * 126.06891 * 179.69076 * 17 16 15 19 19 H 1.07998 * 119.99600 * 186.64968 * 18 17 16 20 20 C 1.38981 * 119.99963 * 6.65876 * 18 17 16 21 21 N 1.31291 * 120.00358 * 6.64662 * 20 18 17 22 22 Si 1.86801 * 119.99809 * 186.64761 * 20 18 17 23 23 H 1.48507 * 109.47117 * 94.96945 * 22 20 18 24 24 H 1.48497 * 109.47546 * 214.96863 * 22 20 18 25 25 H 1.48499 * 109.47326 * 334.97569 * 22 20 18 26 26 C 1.35684 * 126.08346 * 180.02562 * 14 13 11 27 27 H 1.08997 * 109.47407 * 301.03707 * 1 2 3 28 28 H 1.08997 * 109.47172 * 61.04111 * 1 2 3 29 29 H 1.09010 * 109.47092 * 181.04127 * 1 2 3 30 30 H 1.09005 * 109.46740 * 190.37590 * 3 2 1 31 31 H 1.08991 * 109.47226 * 310.37186 * 3 2 1 32 32 H 1.08998 * 109.47455 * 70.38162 * 3 2 1 33 33 H 0.96992 * 119.99609 * 125.58419 * 4 2 1 34 34 H 1.08006 * 120.04108 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.95892 * 180.25104 * 7 6 5 36 36 H 1.07999 * 119.92622 * 179.72099 * 8 7 6 37 37 H 1.07994 * 119.96171 * 180.02562 * 9 8 7 38 38 H 1.08003 * 120.03634 * 179.97438 * 10 9 8 39 39 H 0.97003 * 120.00155 * 0.02562 * 13 11 2 40 40 H 1.08004 * 125.80609 * 359.96563 * 15 14 13 41 41 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 42 42 H 1.07999 * 126.24547 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.5875 -0.2852 2.4614 6 6 0.8322 0.8720 2.6019 7 6 0.4038 1.2674 3.8539 8 6 0.7348 0.5183 4.9681 9 6 1.4910 -0.6316 4.8325 10 6 1.9179 -1.0357 3.5828 11 6 2.0323 -0.7104 -1.2305 12 8 1.3368 -0.7705 -2.2226 13 7 3.2542 -1.2789 -1.2287 14 6 3.7231 -1.9413 -2.3768 15 6 3.0257 -2.0922 -3.5889 16 7 3.7840 -2.7601 -4.4212 17 7 4.9865 -3.0695 -3.7730 18 6 6.0387 -3.7685 -4.3116 19 1 6.8775 -4.0455 -3.6902 20 6 6.0243 -4.1193 -5.6563 21 7 5.0713 -3.6725 -6.4412 22 14 7.3609 -5.2264 -6.3471 23 1 6.8901 -6.6349 -6.3391 24 1 7.6723 -4.8167 -7.7400 25 1 8.5826 -5.1082 -5.5114 26 6 4.9263 -2.5540 -2.5106 27 1 -0.3634 0.5298 0.8805 28 1 -0.3633 0.4976 -0.8991 29 1 -0.3634 -1.0276 0.0187 30 1 3.1141 1.4481 -0.1851 31 1 1.5334 2.0069 -0.7829 32 1 1.8357 1.9001 0.9680 33 1 2.6409 -1.4294 1.1094 34 1 0.5767 1.4598 1.7325 35 1 -0.1870 2.1648 3.9633 36 1 0.4023 0.8321 5.9466 37 1 1.7474 -1.2145 5.7046 38 1 2.5088 -1.9335 3.4775 39 1 3.8103 -1.2312 -0.4353 40 1 2.0343 -1.7184 -3.7983 41 1 5.0615 -3.9170 -7.3798 42 1 5.6962 -2.6210 -1.7561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906460671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:36 Heat of formation + Delta-G solvation = 74.884114 kcal Electronic energy + Delta-G solvation = -25385.147251 eV Core-core repulsion = 21752.964547 eV Total energy + Delta-G solvation = -3632.182704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.02067 -41.12602 -39.91942 -37.28239 -36.06791 -35.00118 -33.16392 -32.28030 -31.50193 -29.93449 -29.28282 -28.28471 -26.96640 -24.72178 -23.41291 -22.93703 -22.53125 -21.46528 -20.76522 -19.34228 -18.87457 -17.87729 -17.46193 -17.12172 -16.79671 -16.40329 -15.97867 -15.74157 -15.37112 -15.21719 -14.89950 -14.82614 -14.63866 -14.48086 -14.25842 -13.80996 -13.52254 -13.36008 -13.17692 -13.03021 -12.92638 -12.85905 -12.76961 -12.45816 -12.07425 -12.06214 -11.90539 -11.49959 -11.06824 -11.05306 -10.88584 -10.65610 -10.12938 -9.69228 -8.60354 -8.51201 -8.34920 -6.27113 0.63130 0.79014 1.12470 1.38568 1.42183 1.56896 1.80075 1.94564 2.19476 2.30231 2.49304 2.84336 3.06585 3.09155 3.53277 3.91154 3.95022 4.11590 4.20643 4.39231 4.44506 4.54270 4.55139 4.63279 4.69931 4.72710 4.76448 4.86610 4.93566 4.97892 5.03443 5.17438 5.21303 5.25011 5.26665 5.38229 5.47750 5.69881 5.85055 5.93024 5.99839 6.26019 6.37204 6.58917 6.69810 6.74049 7.23746 7.42830 7.63527 8.49466 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002636 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.758866 B =10621.243076 C =11287.478754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.187 3.813 3 C -0.170 4.170 4 N -0.740 5.740 5 C 0.209 3.791 6 C -0.219 4.219 7 C -0.081 4.081 8 C -0.187 4.187 9 C -0.081 4.081 10 C -0.206 4.206 11 C 0.502 3.498 12 O -0.563 6.563 13 N -0.611 5.611 14 C -0.048 4.048 15 C -0.056 4.056 16 N -0.312 5.312 17 N -0.165 5.165 18 C -0.355 4.355 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.826 5.826 22 Si 1.019 2.981 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.241 1.241 26 C -0.078 4.078 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.401 0.599 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.415 0.585 40 H 0.168 0.832 41 H 0.277 0.723 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 8.195 21.507 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.096 3.904 3 C -0.228 4.228 4 N -0.374 5.374 5 C 0.107 3.893 6 C -0.241 4.241 7 C -0.100 4.100 8 C -0.207 4.207 9 C -0.100 4.100 10 C -0.229 4.229 11 C 0.289 3.711 12 O -0.441 6.441 13 N -0.256 5.256 14 C -0.154 4.154 15 C -0.231 4.231 16 N -0.144 5.144 17 N 0.066 4.934 18 C -0.486 4.486 19 H 0.159 0.841 20 C -0.216 4.216 21 N -0.454 5.454 22 Si 0.837 3.163 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.164 1.164 26 C -0.228 4.228 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.237 0.763 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.253 0.747 40 H 0.184 0.816 41 H 0.087 0.913 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.312 7.777 19.254 21.208 hybrid contribution 0.733 -0.501 0.258 0.925 sum -3.579 7.276 19.512 21.130 Atomic orbital electron populations 1.22319 0.91962 1.03032 1.04330 1.20230 0.95866 0.93290 0.80990 1.22510 1.02153 0.92960 1.05217 1.44735 1.52086 1.38758 1.01785 1.17898 0.93645 0.93202 0.84512 1.21373 1.05304 0.98055 0.99344 1.21235 0.97551 0.99411 0.91792 1.21216 1.02878 0.97157 0.99411 1.21151 0.95829 0.96288 0.96714 1.20827 1.07756 1.02160 0.92143 1.21025 0.80865 0.79081 0.90177 1.90618 1.57349 1.59897 1.36197 1.42509 1.17104 1.52417 1.13557 1.17322 0.96226 1.11738 0.90099 1.24137 1.01229 1.05260 0.92499 1.78093 0.93190 1.22359 1.20789 1.44820 1.10493 1.30954 1.07142 1.20612 0.98121 1.34137 0.95750 0.84141 1.26873 1.00564 0.98218 0.95991 1.70352 1.31752 1.37141 1.06130 0.84585 0.76978 0.76870 0.77818 1.19358 1.20058 1.16404 1.22008 1.00305 1.09020 0.91510 0.87957 0.91013 0.93352 0.91851 0.90651 0.87673 0.76269 0.83736 0.84285 0.84884 0.84616 0.85681 0.74744 0.81560 0.91294 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 7.75 71.98 0.56 -3.11 16 2 C 0.19 4.41 0.98 2.86 0.00 4.41 16 3 C -0.17 -3.37 8.31 71.98 0.60 -2.77 16 4 N -0.74 -14.97 5.06 -302.80 -1.53 -16.50 16 5 C 0.21 4.01 6.22 38.21 0.24 4.25 16 6 C -0.22 -3.77 6.71 22.40 0.15 -3.62 16 7 C -0.08 -1.21 10.04 22.25 0.22 -0.99 16 8 C -0.19 -2.75 10.04 22.29 0.22 -2.52 16 9 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 10 C -0.21 -3.70 9.90 22.40 0.22 -3.47 16 11 C 0.50 16.94 6.61 87.66 0.58 17.52 16 12 O -0.56 -24.11 13.23 -3.13 -0.04 -24.15 16 13 N -0.61 -20.57 5.17 -303.92 -1.57 -22.15 16 14 C -0.05 -2.17 6.90 37.73 0.26 -1.91 16 15 C -0.06 -3.04 10.85 85.42 0.93 -2.12 16 16 N -0.31 -18.84 10.48 -56.46 -0.59 -19.43 16 17 N -0.17 -9.14 3.73 -190.01 -0.71 -9.85 16 18 C -0.36 -18.72 10.23 84.01 0.86 -17.86 16 19 H 0.14 6.40 7.84 -2.91 -0.02 6.38 16 20 C 0.00 -0.24 5.48 84.95 0.47 0.22 16 21 N -0.83 -47.73 11.91 21.66 0.26 -47.47 16 22 Si 1.02 38.49 29.56 68.60 2.03 40.52 16 23 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.24 -8.14 7.11 99.48 0.71 -7.44 16 26 C -0.08 -3.56 11.49 83.38 0.96 -2.61 16 27 H 0.10 1.87 4.67 -2.39 -0.01 1.86 16 28 H 0.07 1.76 7.83 -2.39 -0.02 1.74 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 30 H 0.06 1.29 8.10 -2.38 -0.02 1.27 16 31 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 32 H 0.10 1.67 4.83 -2.39 -0.01 1.66 16 33 H 0.40 7.75 7.11 -92.71 -0.66 7.09 16 34 H 0.15 2.23 3.54 -2.91 -0.01 2.22 16 35 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.42 10.50 7.47 -92.71 -0.69 9.81 16 40 H 0.17 9.15 5.92 -2.91 -0.02 9.13 16 41 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.19 6.69 8.06 -2.91 -0.02 6.67 16 Total: -1.00 -74.16 344.16 4.06 -70.10 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.27 Total: 44.54 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 6.49 Total: -15.62 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.15 Total: -115.40 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.04 Total: -24.15 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -74.16 4.06 -70.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.986 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds