Wall clock time and date at job start Tue Mar 31 2020 10:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47542 * 2 1 4 4 C 1.50695 * 109.47004 * 179.97438 * 3 2 1 5 5 O 1.21274 * 120.00413 * 0.27039 * 4 3 2 6 6 N 1.34784 * 119.99635 * 179.97438 * 4 3 2 7 7 C 1.47426 * 125.64612 * 180.02562 * 6 4 3 8 8 C 1.54907 * 104.82789 * 204.09230 * 7 6 4 9 9 H 1.08997 * 111.00609 * 81.06802 * 8 7 6 10 10 C 1.53001 * 111.00100 * 204.91681 * 8 7 6 11 11 C 1.55150 * 101.58316 * 322.98721 * 8 7 6 12 12 H 1.09003 * 110.72004 * 154.04524 * 11 8 7 13 13 N 1.46497 * 110.72339 * 277.14246 * 11 8 7 14 14 C 1.34777 * 119.99986 * 205.00035 * 13 11 8 15 15 O 1.21277 * 120.00343 * 0.02562 * 14 13 11 16 16 C 1.50710 * 119.99937 * 179.97438 * 14 13 11 17 17 S 1.80998 * 109.47028 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99807 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.38792 * 119.99970 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00201 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00266 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 89.99607 * 22 20 18 24 24 H 1.48496 * 109.47362 * 210.00046 * 22 20 18 25 25 H 1.48504 * 109.46514 * 329.99831 * 22 20 18 26 26 C 1.47019 * 125.64691 * 359.69289 * 6 4 3 27 27 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47365 * 300.00556 * 1 2 3 29 29 H 1.09004 * 109.46747 * 59.99765 * 1 2 3 30 30 H 1.08997 * 109.47365 * 239.99444 * 2 1 3 31 31 H 1.09002 * 109.47075 * 119.99819 * 2 1 3 32 32 H 1.09005 * 109.47089 * 59.99653 * 3 2 1 33 33 H 1.09002 * 109.46787 * 299.99995 * 3 2 1 34 34 H 1.09000 * 110.36316 * 322.92768 * 7 6 4 35 35 H 1.08994 * 110.36480 * 85.25138 * 7 6 4 36 36 H 1.09000 * 109.47487 * 58.54199 * 10 8 7 37 37 H 1.09007 * 109.47229 * 178.54810 * 10 8 7 38 38 H 1.09004 * 109.47014 * 298.54405 * 10 8 7 39 39 H 0.96996 * 120.00035 * 24.99379 * 13 11 8 40 40 H 1.08997 * 109.46671 * 300.00277 * 16 14 13 41 41 H 1.09003 * 109.46616 * 59.99772 * 16 14 13 42 42 H 0.96997 * 120.00322 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.88145 * 298.39274 * 26 6 4 44 44 H 1.08997 * 109.88249 * 59.56115 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4423 0.0006 5 8 4.1534 0.3921 -0.0039 6 7 4.2210 2.6096 0.0002 7 6 5.6881 2.7546 0.0002 8 6 5.9481 4.1542 0.6110 9 1 5.8984 4.1210 1.6993 10 6 7.2920 4.7158 0.1425 11 6 4.7683 4.9739 0.0251 12 1 4.5247 5.8161 0.6727 13 7 5.0809 5.4372 -1.3290 14 6 4.4738 6.5345 -1.8228 15 8 3.6690 7.1387 -1.1460 16 6 4.7959 7.0115 -3.2157 17 16 3.8261 8.4945 -3.5849 18 6 4.3837 8.8245 -5.2234 19 1 5.1159 8.1786 -5.6851 20 6 3.8826 9.9151 -5.9205 21 7 2.9906 10.7027 -5.3577 22 14 4.4742 10.2655 -7.6574 23 1 3.6021 9.5586 -8.6294 24 1 4.4183 11.7271 -7.9140 25 1 5.8726 9.7894 -7.8094 26 6 3.6148 3.9490 -0.0072 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 6.1457 1.9807 0.6165 35 1 6.0739 2.7073 -1.0181 36 1 7.3000 4.7792 -0.9456 37 1 7.4378 5.7099 0.5655 38 1 8.0959 4.0585 0.4740 39 1 5.7249 4.9543 -1.8703 40 1 5.8583 7.2455 -3.2829 41 1 4.5501 6.2289 -3.9335 42 1 2.6401 11.4646 -5.8449 43 1 3.0225 4.0827 -0.9124 44 1 2.9844 4.0754 0.8729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071483076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:05 Heat of formation + Delta-G solvation = -86.207105 kcal Electronic energy + Delta-G solvation = -23822.831306 eV Core-core repulsion = 20286.814363 eV Total energy + Delta-G solvation = -3536.016943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74016 -39.31246 -37.76960 -34.62602 -34.17074 -32.58600 -32.46232 -30.09324 -28.77537 -28.12254 -26.29549 -25.52183 -23.42339 -21.91951 -21.03717 -20.18735 -19.34092 -17.98582 -17.29172 -16.84699 -16.36097 -16.16993 -15.63692 -15.09400 -14.95584 -14.83605 -14.49625 -14.07013 -13.81395 -13.63640 -13.41685 -13.18828 -12.92026 -12.84293 -12.61452 -12.47584 -12.25752 -12.03811 -12.00641 -11.69014 -11.42594 -11.26694 -11.09665 -11.06540 -11.02937 -11.00104 -10.78892 -10.06596 -9.85753 -9.53097 -9.14388 -9.08562 -8.88130 -8.29384 -6.54826 -6.25649 -3.96599 2.41811 2.68649 2.93745 2.95212 3.19823 3.24986 3.28610 3.62013 3.93700 4.16660 4.26598 4.42961 4.51578 4.61968 4.72085 4.88739 5.01453 5.06470 5.09191 5.09870 5.12816 5.23744 5.27457 5.34763 5.39610 5.44955 5.46404 5.49829 5.59435 5.70170 5.76469 5.78096 5.82215 5.88446 5.91359 5.98297 6.06981 6.07768 6.49414 7.22873 7.55149 7.56956 7.92986 8.31329 8.48189 9.19990 10.81737 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002764 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.208960 B =10127.694788 C =11093.142171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.529 3.471 5 O -0.545 6.545 6 N -0.620 5.620 7 C 0.107 3.893 8 C -0.112 4.112 9 H 0.098 0.902 10 C -0.141 4.141 11 C 0.140 3.860 12 H 0.114 0.886 13 N -0.729 5.729 14 C 0.535 3.465 15 O -0.514 6.514 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.087 3.913 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.079 0.921 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -17.504 12.716 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.178 4.178 4 C 0.319 3.681 5 O -0.422 6.422 6 N -0.355 5.355 7 C -0.015 4.015 8 C -0.131 4.131 9 H 0.116 0.884 10 C -0.199 4.199 11 C 0.033 3.967 12 H 0.132 0.868 13 N -0.385 5.385 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.037 4.037 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.903 -16.958 13.819 21.958 hybrid contribution 1.555 -0.565 -2.222 2.770 sum 3.458 -17.523 11.596 21.295 Atomic orbital electron populations 1.21797 0.95339 1.01957 1.02005 1.21281 0.95400 0.94555 1.03412 1.21730 0.91235 1.00208 1.04631 1.20484 0.90227 0.81933 0.75485 1.90695 1.70614 1.30555 1.50336 1.48557 1.07288 1.05956 1.73657 1.22319 0.80934 0.97109 1.01144 1.22685 0.95387 0.93834 1.01222 0.88386 1.21661 0.94885 1.01506 1.01803 1.21845 0.93120 0.96370 0.85328 0.86832 1.46080 1.46622 1.30010 1.15746 1.20354 0.80028 0.79070 0.88421 1.90707 1.32954 1.55283 1.59881 1.23540 1.05972 1.05970 0.95012 1.85380 1.54065 1.25291 1.18465 1.22858 1.29588 1.15819 1.00155 0.90931 1.24989 0.94705 0.94983 0.98875 1.70011 1.27496 1.15345 1.37425 0.86170 0.79096 0.77670 0.82584 1.20253 1.20729 1.19692 1.22645 0.96747 0.81323 1.03014 0.92400 0.92632 0.92494 0.91284 0.91365 0.88877 0.88724 0.90135 0.91353 0.92043 0.91446 0.91939 0.76556 0.89156 0.89242 0.92148 0.90279 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.11 -0.94 5.22 -26.73 -0.14 -1.08 16 3 C -0.14 -1.20 4.89 -27.88 -0.14 -1.33 16 4 C 0.53 6.06 7.85 -10.98 -0.09 5.97 16 5 O -0.54 -8.06 16.24 5.56 0.09 -7.97 16 6 N -0.62 -6.21 3.33 -170.52 -0.57 -6.78 16 7 C 0.11 0.95 6.33 -2.53 -0.02 0.93 16 8 C -0.11 -0.83 3.51 -88.47 -0.31 -1.14 16 9 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 10 C -0.14 -0.96 8.98 37.16 0.33 -0.62 16 11 C 0.14 1.37 3.10 -66.09 -0.21 1.16 16 12 H 0.11 1.24 7.55 -51.93 -0.39 0.85 16 13 N -0.73 -8.40 4.40 -52.02 -0.23 -8.63 16 14 C 0.53 8.95 7.85 -10.98 -0.09 8.87 16 15 O -0.51 -10.53 15.51 5.56 0.09 -10.45 16 16 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 17 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 18 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 22 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.09 0.83 6.23 -3.06 -0.02 0.81 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 35 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.06 0.42 6.27 -51.93 -0.33 0.10 16 37 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 3.78 7.05 -40.82 -0.29 3.49 16 40 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 41 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -34.54 376.02 -8.63 -43.16 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.29 Total: 0.14 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 0.12 Total: -2.48 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.06 Total: -40.38 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.54 -8.63 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071483076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.045 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds