Wall clock time and date at job start Tue Mar 31 2020 10:43:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.53002 * 109.47229 * 2 1
4 4 H 1.09003 * 109.46854 * 304.99738 * 3 2 1
5 5 S 1.81400 * 109.47150 * 64.99566 * 3 2 1
6 6 C 1.81402 * 102.99586 * 190.68252 * 5 3 2
7 7 C 1.50696 * 109.47026 * 184.99958 * 3 2 1
8 8 O 1.21281 * 119.99866 * 324.39081 * 7 3 2
9 9 N 1.34777 * 120.00233 * 144.66452 * 7 3 2
10 10 C 1.44959 * 117.33623 * 357.21437 * 9 7 3
11 11 C 1.51959 * 111.94130 * 203.73013 * 10 9 7
12 12 O 1.41327 * 111.60260 * 319.69297 * 11 10 9
13 13 C 1.40857 * 118.30981 * 56.89345 * 12 11 10
14 14 H 1.08997 * 109.54210 * 188.62864 * 13 12 11
15 15 C 1.53911 * 110.30022 * 68.00654 * 13 12 11
16 16 N 1.46776 * 107.62885 * 221.40869 * 15 13 12
17 17 C 1.36938 * 125.36349 * 178.82979 * 16 15 13
18 18 H 1.08000 * 119.99594 * 185.78273 * 17 16 15
19 19 C 1.38813 * 120.00003 * 5.78598 * 17 16 15
20 20 N 1.31614 * 119.99991 * 353.77387 * 19 17 16
21 21 Si 1.86799 * 119.99650 * 173.77772 * 19 17 16
22 22 H 1.48499 * 109.46939 * 94.99023 * 21 19 17
23 23 H 1.48503 * 109.47042 * 214.98871 * 21 19 17
24 24 H 1.48493 * 109.47153 * 334.98837 * 21 19 17
25 25 C 1.46875 * 109.26989 * 358.81134 * 16 15 13
26 26 C 1.44542 * 117.34036 * 176.94559 * 9 7 3
27 27 H 1.08993 * 109.64826 * 286.47889 * 26 9 7
28 28 H 1.09007 * 109.46828 * 300.00719 * 1 2 3
29 29 H 1.08996 * 109.46505 * 59.99906 * 1 2 3
30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47072 * 239.99201 * 2 1 3
32 32 H 1.09002 * 109.46470 * 119.99661 * 2 1 3
33 33 H 1.09000 * 109.47087 * 186.75940 * 6 5 3
34 34 H 1.09000 * 109.46976 * 306.75579 * 6 5 3
35 35 H 1.08993 * 109.47301 * 66.76186 * 6 5 3
36 36 H 1.09003 * 108.98661 * 324.35896 * 10 9 7
37 37 H 1.08997 * 108.99258 * 83.17554 * 10 9 7
38 38 H 1.09003 * 109.05508 * 80.23623 * 11 10 9
39 39 H 1.08993 * 109.05567 * 199.14606 * 11 10 9
40 40 H 1.09002 * 109.82654 * 340.93535 * 15 13 12
41 41 H 1.09002 * 109.82382 * 101.80291 * 15 13 12
42 42 H 0.96998 * 120.00336 * 179.97438 * 20 19 17
43 43 H 1.09002 * 110.06701 * 137.03838 * 25 16 15
44 44 H 1.09002 * 110.06551 * 258.50029 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6055 1.9815 -0.8419
5 16 1.5601 2.2536 1.5500
6 6 1.9489 3.9973 1.2353
7 6 3.5420 1.4443 -0.1238
8 8 4.1955 0.5736 0.4108
9 7 4.1594 2.4164 -0.8240
10 6 3.3200 3.3958 -1.4856
11 6 4.0289 4.0509 -2.6592
12 8 5.3833 4.3243 -2.3623
13 6 6.2088 3.2548 -1.9637
14 1 7.1699 3.6424 -1.6258
15 6 6.4297 2.2845 -3.1378
16 7 6.3460 0.9185 -2.6073
17 6 6.4667 -0.2277 -3.3468
18 1 6.2979 -1.1890 -2.8843
19 6 6.8060 -0.1540 -4.6908
20 7 6.8916 1.0174 -5.2847
21 14 7.1408 -1.7176 -5.6566
22 1 5.9020 -2.1416 -6.3570
23 1 8.2113 -1.4636 -6.6540
24 1 7.5755 -2.7904 -4.7264
25 6 6.1128 0.9747 -1.1583
26 6 5.6045 2.4009 -0.8492
27 1 5.9913 2.7256 0.1166
28 1 -0.3633 0.5140 0.8900
29 1 -0.3632 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.8934 -0.5140 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 1.8107 4.5714 2.1515
34 1 2.9837 4.0848 0.9043
35 1 1.2858 4.3834 0.4612
36 1 2.4173 2.9031 -1.8467
37 1 3.0400 4.1661 -0.7671
38 1 3.9810 3.3849 -3.5207
39 1 3.5229 4.9847 -2.9043
40 1 5.6580 2.4358 -3.8927
41 1 7.4134 2.4524 -3.5761
42 1 7.1290 1.0689 -6.2237
43 1 5.3608 0.2395 -0.8717
44 1 7.0430 0.7862 -0.6222
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001083052567.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:23
Heat of formation + Delta-G solvation = -21.603503 kcal
Electronic energy + Delta-G solvation = -26391.201120 eV
Core-core repulsion = 22857.985599 eV
Total energy + Delta-G solvation = -3533.215521 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.145 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.92853 -38.56186 -36.02313 -34.98145 -34.55078 -32.42439 -30.14956 -29.38252
-28.59257 -27.87289 -26.76647 -24.59956 -23.39764 -22.27622 -20.92826 -19.94301
-18.63177 -17.67685 -16.94466 -16.91274 -16.59750 -15.67114 -15.39727 -15.10190
-14.81341 -14.71370 -14.41038 -14.08795 -13.74248 -13.61574 -13.27555 -13.20775
-12.67816 -12.65733 -12.34011 -12.13260 -11.88046 -11.84668 -11.47376 -11.20442
-11.13783 -11.04316 -10.97445 -10.70043 -10.62300 -10.51738 -10.12265 -10.04187
-9.75571 -9.44229 -8.96997 -8.58143 -8.29069 -7.80659 -6.80685 -5.73916
-3.06007 1.26506 2.15057 2.87402 3.12516 3.38935 3.45099 3.47661
3.99311 4.28463 4.49257 4.50457 4.73203 4.77829 4.87627 4.92327
5.03892 5.10758 5.20068 5.28029 5.34355 5.41119 5.48794 5.52714
5.61332 5.64773 5.69186 5.81001 5.91675 5.92347 6.01598 6.03157
6.22129 6.25703 6.46351 6.80648 7.12590 7.33147 7.40482 7.54030
7.70291 7.84351 8.22588 8.30635 9.20778 9.81352 10.45097 11.38012
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.015935 B = 0.005047 C = 0.004305
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1756.768380 B = 5546.784525 C = 6502.640517
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.094 4.094
3 C -0.085 4.085
4 H 0.108 0.892
5 S -0.208 6.208
6 C -0.141 4.141
7 C 0.513 3.487
8 O -0.506 6.506
9 N -0.582 5.582
10 C 0.064 3.936
11 C 0.059 3.941
12 O -0.369 6.369
13 C 0.069 3.931
14 H 0.111 0.889
15 C 0.153 3.847
16 N -0.601 5.601
17 C -0.223 4.223
18 H 0.078 0.922
19 C -0.008 4.008
20 N -0.923 5.923
21 Si 0.910 3.090
22 H -0.290 1.290
23 H -0.290 1.290
24 H -0.280 1.280
25 C 0.110 3.890
26 C 0.110 3.890
27 H 0.073 0.927
28 H 0.066 0.934
29 H 0.054 0.946
30 H 0.059 0.941
31 H 0.082 0.918
32 H 0.082 0.918
33 H 0.103 0.897
34 H 0.085 0.915
35 H 0.080 0.920
36 H 0.081 0.919
37 H 0.069 0.931
38 H 0.063 0.937
39 H 0.103 0.897
40 H 0.051 0.949
41 H 0.055 0.945
42 H 0.252 0.748
43 H 0.085 0.915
44 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.537 7.907 10.054 17.910
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.133 4.133
3 C -0.216 4.216
4 H 0.125 0.875
5 S 0.018 5.982
6 C -0.309 4.309
7 C 0.298 3.702
8 O -0.382 6.382
9 N -0.316 5.316
10 C -0.060 4.060
11 C -0.018 4.018
12 O -0.287 6.287
13 C 0.010 3.990
14 H 0.128 0.872
15 C 0.028 3.972
16 N -0.329 5.329
17 C -0.351 4.351
18 H 0.096 0.904
19 C -0.204 4.204
20 N -0.571 5.571
21 Si 0.741 3.259
22 H -0.218 1.218
23 H -0.216 1.216
24 H -0.206 1.206
25 C -0.016 4.016
26 C 0.005 3.995
27 H 0.090 0.910
28 H 0.085 0.915
29 H 0.073 0.927
30 H 0.078 0.922
31 H 0.100 0.900
32 H 0.101 0.899
33 H 0.121 0.879
34 H 0.104 0.896
35 H 0.099 0.901
36 H 0.099 0.901
37 H 0.087 0.913
38 H 0.081 0.919
39 H 0.121 0.879
40 H 0.069 0.931
41 H 0.073 0.927
42 H 0.062 0.938
43 H 0.103 0.897
44 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges -12.464 7.174 11.010 18.112
hybrid contribution 0.612 -0.312 -1.804 1.930
sum -11.852 6.863 9.206 16.502
Atomic orbital electron populations
1.21845 0.94501 1.02121 1.02500 1.21220 0.96326 0.91270 1.04445
1.23625 0.95948 1.02770 0.99265 0.87461 1.86878 1.83624 1.04751
1.22906 1.23764 1.05241 0.95622 1.06309 1.20314 0.89183 0.81578
0.79161 1.90615 1.65691 1.36050 1.45847 1.46585 1.06325 1.28157
1.50519 1.22013 0.94661 0.92444 0.96873 1.22199 0.82873 1.01055
0.95703 1.86874 1.19799 1.34733 1.87245 1.23016 0.92624 0.88395
0.94994 0.87176 1.21664 1.01837 0.82482 0.91226 1.44224 1.85246
1.02038 1.01378 1.19055 1.39812 0.84783 0.91458 0.90417 1.24796
1.01877 0.96965 0.96763 1.69953 1.54671 1.21718 1.10776 0.86120
0.77666 0.82404 0.79754 1.21774 1.21613 1.20567 1.22154 0.98757
0.94193 0.86451 1.21861 0.78764 0.99801 0.99042 0.90957 0.91474
0.92657 0.92155 0.89993 0.89902 0.87881 0.89573 0.90109 0.90083
0.91299 0.91899 0.87927 0.93104 0.92718 0.93776 0.89705 0.95632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.49 9.74 37.16 0.36 -1.13 16
2 C -0.09 -1.18 4.99 -26.73 -0.13 -1.31 16
3 C -0.08 -1.09 2.08 -27.88 -0.06 -1.15 16
4 H 0.11 1.19 5.50 -51.92 -0.29 0.90 16
5 S -0.21 -2.41 20.55 -107.50 -2.21 -4.62 16
6 C -0.14 -1.25 9.19 101.05 0.93 -0.32 16
7 C 0.51 8.51 6.01 -10.99 -0.07 8.45 16
8 O -0.51 -10.11 13.28 5.56 0.07 -10.04 16
9 N -0.58 -9.45 2.94 -168.53 -0.50 -9.94 16
10 C 0.06 0.81 5.25 -5.40 -0.03 0.78 16
11 C 0.06 0.84 6.72 36.63 0.25 1.09 16
12 O -0.37 -6.37 10.24 -34.46 -0.35 -6.72 16
13 C 0.07 1.30 3.82 -26.33 -0.10 1.20 16
14 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16
15 C 0.15 3.70 5.03 -3.42 -0.02 3.68 16
16 N -0.60 -15.58 3.39 -171.20 -0.58 -16.16 16
17 C -0.22 -6.33 10.24 -15.06 -0.15 -6.48 16
18 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16
19 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16
20 N -0.92 -27.02 10.30 55.49 0.57 -26.45 16
21 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16
22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
25 C 0.11 2.48 6.29 -3.03 -0.02 2.46 16
26 C 0.11 2.03 3.45 -68.24 -0.24 1.80 16
27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16
28 H 0.07 0.65 7.13 -51.92 -0.37 0.27 16
29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16
32 H 0.08 1.14 8.02 -51.93 -0.42 0.73 16
33 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16
34 H 0.09 0.87 5.93 -51.92 -0.31 0.56 16
35 H 0.08 0.57 7.96 -51.93 -0.41 0.16 16
36 H 0.08 0.91 5.77 -51.93 -0.30 0.61 16
37 H 0.07 0.71 4.71 -51.93 -0.24 0.47 16
38 H 0.06 1.06 6.81 -51.93 -0.35 0.70 16
39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16
40 H 0.05 1.35 5.91 -51.93 -0.31 1.04 16
41 H 0.05 1.47 7.34 -51.93 -0.38 1.09 16
42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
43 H 0.09 2.04 4.81 -52.38 -0.25 1.78 16
44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
LS Contribution 341.04 15.07 5.14 5.14
Total: -1.00 -32.39 341.04 -8.81 -41.20
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -6.56 Total: 1.54 kcal
Atomic # 6 Polarization: 8.11 SS G_CDS: 0.63 Total: 8.74 kcal
Atomic # 7 Polarization: -52.06 SS G_CDS: -0.50 Total: -52.56 kcal
Atomic # 8 Polarization: -16.48 SS G_CDS: -0.28 Total: -16.76 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal
Atomic # 16 Polarization: -2.41 SS G_CDS: -2.21 Total: -4.62 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -32.39 -8.81 -41.20 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083052567.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.595 kcal
(2) G-P(sol) polarization free energy of solvation -32.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds