Wall clock time and date at job start Tue Mar 31 2020 10:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.47229 * 2 1 4 4 H 1.09003 * 109.46854 * 304.99738 * 3 2 1 5 5 S 1.81400 * 109.47150 * 64.99566 * 3 2 1 6 6 C 1.81402 * 102.99586 * 190.68252 * 5 3 2 7 7 C 1.50696 * 109.47026 * 184.99958 * 3 2 1 8 8 O 1.21281 * 119.99866 * 324.39081 * 7 3 2 9 9 N 1.34777 * 120.00233 * 144.66452 * 7 3 2 10 10 C 1.44959 * 117.33623 * 357.21437 * 9 7 3 11 11 C 1.51959 * 111.94130 * 203.73013 * 10 9 7 12 12 O 1.41327 * 111.60260 * 319.69297 * 11 10 9 13 13 C 1.40857 * 118.30981 * 56.89345 * 12 11 10 14 14 H 1.08997 * 109.54210 * 188.62864 * 13 12 11 15 15 C 1.53911 * 110.30022 * 68.00654 * 13 12 11 16 16 N 1.46776 * 107.62885 * 221.40869 * 15 13 12 17 17 C 1.36938 * 125.36349 * 178.82979 * 16 15 13 18 18 H 1.08000 * 119.99594 * 185.78273 * 17 16 15 19 19 C 1.38813 * 120.00003 * 5.78598 * 17 16 15 20 20 N 1.31614 * 119.99991 * 353.77387 * 19 17 16 21 21 Si 1.86799 * 119.99650 * 173.77772 * 19 17 16 22 22 H 1.48499 * 109.46939 * 94.99023 * 21 19 17 23 23 H 1.48503 * 109.47042 * 214.98871 * 21 19 17 24 24 H 1.48493 * 109.47153 * 334.98837 * 21 19 17 25 25 C 1.46875 * 109.26989 * 358.81134 * 16 15 13 26 26 C 1.44542 * 117.34036 * 176.94559 * 9 7 3 27 27 H 1.08993 * 109.64826 * 286.47889 * 26 9 7 28 28 H 1.09007 * 109.46828 * 300.00719 * 1 2 3 29 29 H 1.08996 * 109.46505 * 59.99906 * 1 2 3 30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47072 * 239.99201 * 2 1 3 32 32 H 1.09002 * 109.46470 * 119.99661 * 2 1 3 33 33 H 1.09000 * 109.47087 * 186.75940 * 6 5 3 34 34 H 1.09000 * 109.46976 * 306.75579 * 6 5 3 35 35 H 1.08993 * 109.47301 * 66.76186 * 6 5 3 36 36 H 1.09003 * 108.98661 * 324.35896 * 10 9 7 37 37 H 1.08997 * 108.99258 * 83.17554 * 10 9 7 38 38 H 1.09003 * 109.05508 * 80.23623 * 11 10 9 39 39 H 1.08993 * 109.05567 * 199.14606 * 11 10 9 40 40 H 1.09002 * 109.82654 * 340.93535 * 15 13 12 41 41 H 1.09002 * 109.82382 * 101.80291 * 15 13 12 42 42 H 0.96998 * 120.00336 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.06701 * 137.03838 * 25 16 15 44 44 H 1.09002 * 110.06551 * 258.50029 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 16 1.5601 2.2536 1.5500 6 6 1.9489 3.9973 1.2353 7 6 3.5420 1.4443 -0.1238 8 8 4.1955 0.5736 0.4108 9 7 4.1594 2.4164 -0.8240 10 6 3.3200 3.3958 -1.4856 11 6 4.0289 4.0509 -2.6592 12 8 5.3833 4.3243 -2.3623 13 6 6.2088 3.2548 -1.9637 14 1 7.1699 3.6424 -1.6258 15 6 6.4297 2.2845 -3.1378 16 7 6.3460 0.9185 -2.6073 17 6 6.4667 -0.2277 -3.3468 18 1 6.2979 -1.1890 -2.8843 19 6 6.8060 -0.1540 -4.6908 20 7 6.8916 1.0174 -5.2847 21 14 7.1408 -1.7176 -5.6566 22 1 5.9020 -2.1416 -6.3570 23 1 8.2113 -1.4636 -6.6540 24 1 7.5755 -2.7904 -4.7264 25 6 6.1128 0.9747 -1.1583 26 6 5.6045 2.4009 -0.8492 27 1 5.9913 2.7256 0.1166 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8107 4.5714 2.1515 34 1 2.9837 4.0848 0.9043 35 1 1.2858 4.3834 0.4612 36 1 2.4173 2.9031 -1.8467 37 1 3.0400 4.1661 -0.7671 38 1 3.9810 3.3849 -3.5207 39 1 3.5229 4.9847 -2.9043 40 1 5.6580 2.4358 -3.8927 41 1 7.4134 2.4524 -3.5761 42 1 7.1290 1.0689 -6.2237 43 1 5.3608 0.2395 -0.8717 44 1 7.0430 0.7862 -0.6222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083052567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:23 Heat of formation + Delta-G solvation = -21.603503 kcal Electronic energy + Delta-G solvation = -26391.201120 eV Core-core repulsion = 22857.985599 eV Total energy + Delta-G solvation = -3533.215521 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92853 -38.56186 -36.02313 -34.98145 -34.55078 -32.42439 -30.14956 -29.38252 -28.59257 -27.87289 -26.76647 -24.59956 -23.39764 -22.27622 -20.92826 -19.94301 -18.63177 -17.67685 -16.94466 -16.91274 -16.59750 -15.67114 -15.39727 -15.10190 -14.81341 -14.71370 -14.41038 -14.08795 -13.74248 -13.61574 -13.27555 -13.20775 -12.67816 -12.65733 -12.34011 -12.13260 -11.88046 -11.84668 -11.47376 -11.20442 -11.13783 -11.04316 -10.97445 -10.70043 -10.62300 -10.51738 -10.12265 -10.04187 -9.75571 -9.44229 -8.96997 -8.58143 -8.29069 -7.80659 -6.80685 -5.73916 -3.06007 1.26506 2.15057 2.87402 3.12516 3.38935 3.45099 3.47661 3.99311 4.28463 4.49257 4.50457 4.73203 4.77829 4.87627 4.92327 5.03892 5.10758 5.20068 5.28029 5.34355 5.41119 5.48794 5.52714 5.61332 5.64773 5.69186 5.81001 5.91675 5.92347 6.01598 6.03157 6.22129 6.25703 6.46351 6.80648 7.12590 7.33147 7.40482 7.54030 7.70291 7.84351 8.22588 8.30635 9.20778 9.81352 10.45097 11.38012 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.005047 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.768380 B = 5546.784525 C = 6502.640517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.085 4.085 4 H 0.108 0.892 5 S -0.208 6.208 6 C -0.141 4.141 7 C 0.513 3.487 8 O -0.506 6.506 9 N -0.582 5.582 10 C 0.064 3.936 11 C 0.059 3.941 12 O -0.369 6.369 13 C 0.069 3.931 14 H 0.111 0.889 15 C 0.153 3.847 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.110 3.890 26 C 0.110 3.890 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.085 0.915 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 7.907 10.054 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.216 4.216 4 H 0.125 0.875 5 S 0.018 5.982 6 C -0.309 4.309 7 C 0.298 3.702 8 O -0.382 6.382 9 N -0.316 5.316 10 C -0.060 4.060 11 C -0.018 4.018 12 O -0.287 6.287 13 C 0.010 3.990 14 H 0.128 0.872 15 C 0.028 3.972 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.741 3.259 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.016 4.016 26 C 0.005 3.995 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.464 7.174 11.010 18.112 hybrid contribution 0.612 -0.312 -1.804 1.930 sum -11.852 6.863 9.206 16.502 Atomic orbital electron populations 1.21845 0.94501 1.02121 1.02500 1.21220 0.96326 0.91270 1.04445 1.23625 0.95948 1.02770 0.99265 0.87461 1.86878 1.83624 1.04751 1.22906 1.23764 1.05241 0.95622 1.06309 1.20314 0.89183 0.81578 0.79161 1.90615 1.65691 1.36050 1.45847 1.46585 1.06325 1.28157 1.50519 1.22013 0.94661 0.92444 0.96873 1.22199 0.82873 1.01055 0.95703 1.86874 1.19799 1.34733 1.87245 1.23016 0.92624 0.88395 0.94994 0.87176 1.21664 1.01837 0.82482 0.91226 1.44224 1.85246 1.02038 1.01378 1.19055 1.39812 0.84783 0.91458 0.90417 1.24796 1.01877 0.96965 0.96763 1.69953 1.54671 1.21718 1.10776 0.86120 0.77666 0.82404 0.79754 1.21774 1.21613 1.20567 1.22154 0.98757 0.94193 0.86451 1.21861 0.78764 0.99801 0.99042 0.90957 0.91474 0.92657 0.92155 0.89993 0.89902 0.87881 0.89573 0.90109 0.90083 0.91299 0.91899 0.87927 0.93104 0.92718 0.93776 0.89705 0.95632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.74 37.16 0.36 -1.13 16 2 C -0.09 -1.18 4.99 -26.73 -0.13 -1.31 16 3 C -0.08 -1.09 2.08 -27.88 -0.06 -1.15 16 4 H 0.11 1.19 5.50 -51.92 -0.29 0.90 16 5 S -0.21 -2.41 20.55 -107.50 -2.21 -4.62 16 6 C -0.14 -1.25 9.19 101.05 0.93 -0.32 16 7 C 0.51 8.51 6.01 -10.99 -0.07 8.45 16 8 O -0.51 -10.11 13.28 5.56 0.07 -10.04 16 9 N -0.58 -9.45 2.94 -168.53 -0.50 -9.94 16 10 C 0.06 0.81 5.25 -5.40 -0.03 0.78 16 11 C 0.06 0.84 6.72 36.63 0.25 1.09 16 12 O -0.37 -6.37 10.24 -34.46 -0.35 -6.72 16 13 C 0.07 1.30 3.82 -26.33 -0.10 1.20 16 14 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 15 C 0.15 3.70 5.03 -3.42 -0.02 3.68 16 16 N -0.60 -15.58 3.39 -171.20 -0.58 -16.16 16 17 C -0.22 -6.33 10.24 -15.06 -0.15 -6.48 16 18 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 19 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 20 N -0.92 -27.02 10.30 55.49 0.57 -26.45 16 21 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.11 2.48 6.29 -3.03 -0.02 2.46 16 26 C 0.11 2.03 3.45 -68.24 -0.24 1.80 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 0.65 7.13 -51.92 -0.37 0.27 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.14 8.02 -51.93 -0.42 0.73 16 33 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.09 0.87 5.93 -51.92 -0.31 0.56 16 35 H 0.08 0.57 7.96 -51.93 -0.41 0.16 16 36 H 0.08 0.91 5.77 -51.93 -0.30 0.61 16 37 H 0.07 0.71 4.71 -51.93 -0.24 0.47 16 38 H 0.06 1.06 6.81 -51.93 -0.35 0.70 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.35 5.91 -51.93 -0.31 1.04 16 41 H 0.05 1.47 7.34 -51.93 -0.38 1.09 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 2.04 4.81 -52.38 -0.25 1.78 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -32.39 341.04 -8.81 -41.20 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.56 Total: 1.54 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 0.63 Total: 8.74 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.50 Total: -52.56 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.28 Total: -16.76 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.21 Total: -4.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.39 -8.81 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083052567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.595 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds