Wall clock time and date at job start Tue Mar 31 2020 10:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.47229 * 2 1 4 4 H 1.09003 * 109.46854 * 304.99738 * 3 2 1 5 5 S 1.81400 * 109.47150 * 64.99566 * 3 2 1 6 6 C 1.81402 * 102.99586 * 190.68252 * 5 3 2 7 7 C 1.50696 * 109.47026 * 184.99958 * 3 2 1 8 8 O 1.21281 * 119.99866 * 324.39081 * 7 3 2 9 9 N 1.34777 * 120.00233 * 144.66452 * 7 3 2 10 10 C 1.44959 * 117.33623 * 357.21437 * 9 7 3 11 11 C 1.51959 * 111.94130 * 203.73013 * 10 9 7 12 12 O 1.41327 * 111.60260 * 319.69297 * 11 10 9 13 13 C 1.40857 * 118.30981 * 56.89345 * 12 11 10 14 14 H 1.08997 * 109.54210 * 188.62864 * 13 12 11 15 15 C 1.53911 * 110.30022 * 68.00654 * 13 12 11 16 16 N 1.46776 * 107.62885 * 221.40869 * 15 13 12 17 17 C 1.36938 * 125.36349 * 178.82979 * 16 15 13 18 18 H 1.08000 * 119.99594 * 185.78273 * 17 16 15 19 19 C 1.38813 * 120.00003 * 5.78598 * 17 16 15 20 20 N 1.31614 * 119.99991 * 353.77387 * 19 17 16 21 21 Si 1.86799 * 119.99650 * 173.77772 * 19 17 16 22 22 H 1.48499 * 109.46939 * 94.99023 * 21 19 17 23 23 H 1.48503 * 109.47042 * 214.98871 * 21 19 17 24 24 H 1.48493 * 109.47153 * 334.98837 * 21 19 17 25 25 C 1.46875 * 109.26989 * 358.81134 * 16 15 13 26 26 C 1.44542 * 117.34036 * 176.94559 * 9 7 3 27 27 H 1.08993 * 109.64826 * 286.47889 * 26 9 7 28 28 H 1.09007 * 109.46828 * 300.00719 * 1 2 3 29 29 H 1.08996 * 109.46505 * 59.99906 * 1 2 3 30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47072 * 239.99201 * 2 1 3 32 32 H 1.09002 * 109.46470 * 119.99661 * 2 1 3 33 33 H 1.09000 * 109.47087 * 186.75940 * 6 5 3 34 34 H 1.09000 * 109.46976 * 306.75579 * 6 5 3 35 35 H 1.08993 * 109.47301 * 66.76186 * 6 5 3 36 36 H 1.09003 * 108.98661 * 324.35896 * 10 9 7 37 37 H 1.08997 * 108.99258 * 83.17554 * 10 9 7 38 38 H 1.09003 * 109.05508 * 80.23623 * 11 10 9 39 39 H 1.08993 * 109.05567 * 199.14606 * 11 10 9 40 40 H 1.09002 * 109.82654 * 340.93535 * 15 13 12 41 41 H 1.09002 * 109.82382 * 101.80291 * 15 13 12 42 42 H 0.96998 * 120.00336 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.06701 * 137.03838 * 25 16 15 44 44 H 1.09002 * 110.06551 * 258.50029 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 16 1.5601 2.2536 1.5500 6 6 1.9489 3.9973 1.2353 7 6 3.5420 1.4443 -0.1238 8 8 4.1955 0.5736 0.4108 9 7 4.1594 2.4164 -0.8240 10 6 3.3200 3.3958 -1.4856 11 6 4.0289 4.0509 -2.6592 12 8 5.3833 4.3243 -2.3623 13 6 6.2088 3.2548 -1.9637 14 1 7.1699 3.6424 -1.6258 15 6 6.4297 2.2845 -3.1378 16 7 6.3460 0.9185 -2.6073 17 6 6.4667 -0.2277 -3.3468 18 1 6.2979 -1.1890 -2.8843 19 6 6.8060 -0.1540 -4.6908 20 7 6.8916 1.0174 -5.2847 21 14 7.1408 -1.7176 -5.6566 22 1 5.9020 -2.1416 -6.3570 23 1 8.2113 -1.4636 -6.6540 24 1 7.5755 -2.7904 -4.7264 25 6 6.1128 0.9747 -1.1583 26 6 5.6045 2.4009 -0.8492 27 1 5.9913 2.7256 0.1166 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8107 4.5714 2.1515 34 1 2.9837 4.0848 0.9043 35 1 1.2858 4.3834 0.4612 36 1 2.4173 2.9031 -1.8467 37 1 3.0400 4.1661 -0.7671 38 1 3.9810 3.3849 -3.5207 39 1 3.5229 4.9847 -2.9043 40 1 5.6580 2.4358 -3.8927 41 1 7.4134 2.4524 -3.5761 42 1 7.1290 1.0689 -6.2237 43 1 5.3608 0.2395 -0.8717 44 1 7.0430 0.7862 -0.6222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083052567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:22 Heat of formation + Delta-G solvation = -43.287616 kcal Electronic energy + Delta-G solvation = -26392.141413 eV Core-core repulsion = 22857.985599 eV Total energy + Delta-G solvation = -3534.155815 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.30353 -39.95842 -37.71485 -36.31311 -35.65727 -34.30051 -31.81255 -30.32267 -29.78484 -29.36768 -28.18155 -26.47323 -24.75558 -23.46711 -22.42919 -21.48196 -20.03304 -19.23564 -18.39283 -18.28691 -17.97268 -17.04474 -16.74118 -16.47161 -16.28113 -15.88804 -15.71468 -15.65289 -15.26742 -14.59103 -14.42187 -14.27500 -14.19164 -13.94933 -13.67031 -13.62692 -13.06016 -13.01729 -12.96458 -12.88452 -12.75007 -12.45701 -12.23326 -12.15523 -12.13883 -11.98388 -11.85712 -11.76556 -11.04676 -10.87197 -10.75231 -10.40591 -9.63403 -8.91850 -8.69984 -7.92039 -5.26975 0.31513 1.29185 1.40778 1.42628 1.52612 1.61987 1.94568 2.43449 2.69008 3.10784 3.26647 3.48067 3.51660 3.65882 3.67396 3.80070 3.89494 4.05713 4.07888 4.25770 4.31180 4.33829 4.34840 4.42271 4.48351 4.52254 4.63129 4.77203 4.77483 4.89656 4.97521 5.04734 5.07816 5.13958 5.35815 5.38654 5.45082 5.55634 5.61184 6.11495 6.13176 6.35527 6.99588 7.05727 7.70612 8.32842 9.17751 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.005047 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.768380 B = 5546.784525 C = 6502.640517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.077 4.077 4 H 0.130 0.870 5 S -0.223 6.223 6 C -0.136 4.136 7 C 0.507 3.493 8 O -0.549 6.549 9 N -0.586 5.586 10 C 0.059 3.941 11 C 0.052 3.948 12 O -0.369 6.369 13 C 0.086 3.914 14 H 0.127 0.873 15 C 0.165 3.835 16 N -0.617 5.617 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.057 4.057 20 N -0.946 5.946 21 Si 0.976 3.024 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.108 3.892 26 C 0.122 3.878 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.029 0.971 39 H 0.150 0.850 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.249 0.751 43 H 0.071 0.929 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 9.574 10.746 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.208 4.208 4 H 0.147 0.853 5 S 0.003 5.997 6 C -0.304 4.304 7 C 0.293 3.707 8 O -0.428 6.428 9 N -0.320 5.320 10 C -0.063 4.063 11 C -0.024 4.024 12 O -0.286 6.286 13 C 0.026 3.974 14 H 0.145 0.855 15 C 0.039 3.961 16 N -0.345 5.345 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.250 4.250 20 N -0.594 5.594 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.198 1.198 25 C -0.018 4.018 26 C 0.017 3.983 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.048 0.952 39 H 0.167 0.833 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -14.511 8.867 11.716 20.650 hybrid contribution 1.216 -0.807 -1.999 2.475 sum -13.295 8.060 9.717 18.334 Atomic orbital electron populations 1.21787 0.91974 1.02920 1.03347 1.21197 0.98407 0.91074 1.02604 1.23560 0.92801 1.03391 1.01077 0.85258 1.87008 1.83126 1.07296 1.22246 1.23877 1.05154 0.93187 1.08155 1.21044 0.90822 0.80690 0.78182 1.90590 1.66977 1.37559 1.47671 1.46721 1.05592 1.29013 1.50624 1.22323 0.94316 0.92640 0.96973 1.22522 0.81846 1.02904 0.95149 1.86885 1.21238 1.33441 1.87074 1.22712 0.94174 0.87765 0.92717 0.85544 1.21409 0.98689 0.83159 0.92802 1.44444 1.85085 1.02158 1.02807 1.19310 1.40181 0.85632 0.92199 0.91106 1.25585 1.01792 1.00058 0.97581 1.70161 1.55089 1.23501 1.10684 0.85109 0.77420 0.78924 0.78175 1.21151 1.21487 1.19824 1.22207 0.98196 0.96868 0.84511 1.21596 0.80608 0.96645 0.99465 0.89076 0.90949 0.91333 0.91490 0.91947 0.91803 0.86172 0.90472 0.87491 0.88172 0.87591 0.95241 0.83292 0.96053 0.96457 0.94175 0.91169 0.96348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.74 71.99 0.70 -1.84 16 2 C -0.09 -2.33 4.99 30.60 0.15 -2.18 16 3 C -0.08 -1.85 2.08 29.85 0.06 -1.79 16 4 H 0.13 2.46 5.50 -2.39 -0.01 2.45 16 5 S -0.22 -4.60 20.55 -56.49 -1.16 -5.76 16 6 C -0.14 -1.82 9.19 113.37 1.04 -0.78 16 7 C 0.51 16.47 6.01 87.66 0.53 16.99 16 8 O -0.55 -22.40 13.28 -3.03 -0.04 -22.44 16 9 N -0.59 -18.21 2.94 -805.49 -2.37 -20.58 16 10 C 0.06 1.33 5.25 86.32 0.45 1.78 16 11 C 0.05 1.37 6.72 71.64 0.48 1.85 16 12 O -0.37 -12.08 10.24 -146.22 -1.50 -13.58 16 13 C 0.09 3.22 3.82 30.85 0.12 3.34 16 14 H 0.13 4.33 8.14 -2.39 -0.02 4.31 16 15 C 0.16 8.25 5.03 86.63 0.44 8.68 16 16 N -0.62 -33.25 3.39 -695.56 -2.36 -35.61 16 17 C -0.24 -14.38 10.24 84.03 0.86 -13.52 16 18 H 0.07 4.14 7.84 -2.91 -0.02 4.12 16 19 C -0.06 -3.30 5.48 84.86 0.47 -2.83 16 20 N -0.95 -57.14 10.30 21.65 0.22 -56.92 16 21 Si 0.98 46.86 29.56 68.60 2.03 48.89 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 25 C 0.11 4.98 6.29 86.83 0.55 5.53 16 26 C 0.12 4.46 3.45 45.83 0.16 4.62 16 27 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.07 1.23 7.13 -2.38 -0.02 1.21 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.80 8.02 -2.39 -0.02 1.78 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.22 5.93 -2.39 -0.01 1.21 16 35 H 0.11 0.92 7.96 -2.39 -0.02 0.90 16 36 H 0.10 1.88 5.77 -2.39 -0.01 1.87 16 37 H 0.11 1.66 4.71 -2.39 -0.01 1.65 16 38 H 0.03 0.98 6.81 -2.39 -0.02 0.96 16 39 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.02 1.18 5.91 -2.39 -0.01 1.17 16 41 H 0.02 0.98 7.34 -2.39 -0.02 0.96 16 42 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.07 3.52 4.81 -9.61 -0.05 3.47 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -74.32 341.04 1.80 -72.53 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.97 Total: 13.62 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.00 Total: 19.85 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -4.50 Total: -113.10 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.54 Total: -36.03 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.16 Total: -5.76 kcal Total: -74.32 1.80 -72.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083052567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.239 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds