Wall clock time and date at job start Tue Mar 31 2020 10:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21562 * 119.99378 * 0.02562 * 14 13 3 16 16 C 1.47873 * 120.00588 * 180.02562 * 14 13 3 17 17 N 1.34548 * 126.04420 * 0.02776 * 16 14 13 18 18 C 1.30869 * 107.26548 * 179.97438 * 17 16 14 19 19 N 1.34580 * 107.62728 * 359.97438 * 18 17 16 20 20 C 1.46505 * 125.74957 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.46829 * 125.00159 * 20 19 18 22 22 C 1.38240 * 119.99564 * 269.72757 * 21 20 19 23 23 C 1.38240 * 119.99537 * 179.76988 * 22 21 20 24 24 C 1.38240 * 120.00021 * 0.50611 * 23 22 21 25 25 C 1.38236 * 119.99687 * 359.74565 * 24 23 22 26 26 C 1.38230 * 120.00002 * 90.00463 * 21 20 19 27 27 N 1.28853 * 108.50387 * 359.73274 * 19 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 35 35 H 1.08006 * 126.18508 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47065 * 245.00009 * 20 19 18 37 37 H 1.09005 * 109.46834 * 5.00353 * 20 19 18 38 38 H 1.07995 * 120.00403 * 0.02562 * 22 21 20 39 39 H 1.07996 * 119.99685 * 180.22902 * 23 22 21 40 40 H 1.07995 * 120.00091 * 179.72971 * 24 23 22 41 41 H 1.08002 * 119.99650 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00151 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3414 2.6318 0.4321 16 6 0.0440 3.3261 2.6302 17 7 0.8034 3.4334 3.7357 18 6 0.1008 4.0839 4.6279 19 7 -1.0898 4.3779 4.0736 20 6 -2.1828 5.1021 4.7274 21 6 -2.5765 6.2865 3.8828 22 6 -1.9640 7.5100 4.0800 23 6 -2.3218 8.5953 3.3020 24 6 -3.2994 8.4596 2.3341 25 6 -3.9155 7.2374 2.1407 26 6 -3.5541 6.1508 2.9150 27 7 -1.1047 3.9198 2.8694 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9977 35 1 0.4192 4.3394 5.6278 36 1 -3.0396 4.4384 4.8444 37 1 -1.8544 5.4478 5.7076 38 1 -1.2031 7.6170 4.8388 39 1 -1.8406 9.5502 3.4535 40 1 -3.5820 9.3086 1.7294 41 1 -4.6797 7.1315 1.3848 42 1 -4.0355 5.1960 2.7638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197192109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:54 Heat of formation + Delta-G solvation = 58.197317 kcal Electronic energy + Delta-G solvation = -25234.824638 eV Core-core repulsion = 21601.918340 eV Total energy + Delta-G solvation = -3632.906298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.38573 -40.58092 -40.12952 -36.98349 -35.94343 -34.32456 -33.09476 -32.81762 -31.91012 -31.82749 -29.20789 -27.78077 -25.56550 -24.57246 -23.62326 -23.30961 -22.35185 -21.72005 -21.17831 -19.55191 -18.31805 -17.94604 -17.53043 -17.30927 -16.98604 -16.41361 -16.30714 -16.06324 -15.79900 -15.59054 -14.89222 -14.59238 -14.36026 -14.27956 -13.88797 -13.74058 -13.57532 -13.46637 -13.17433 -12.92008 -12.87279 -12.64617 -12.20339 -12.19727 -12.08310 -11.95958 -11.61384 -11.46317 -11.36350 -11.11063 -11.06011 -10.52921 -10.51148 -9.87609 -9.85752 -9.69495 -8.15162 -6.32703 0.15835 0.43433 0.46162 1.24447 1.44270 1.47694 1.49151 1.56992 2.29241 2.43758 2.49736 2.87684 3.13907 3.26176 3.44483 3.69391 3.92813 3.97927 4.07441 4.22690 4.27363 4.38243 4.47776 4.54544 4.56055 4.68018 4.72540 4.89644 4.98926 5.04872 5.08455 5.22560 5.37845 5.41575 5.46955 5.50187 5.53155 5.56430 5.59576 5.71661 5.77841 5.89503 6.03094 6.14149 6.72108 6.79075 7.14303 7.29898 7.45413 8.90503 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002877 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.589901 B = 9728.444478 C = 9763.726972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.002 0.998 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.681 5.681 14 C 0.594 3.406 15 O -0.569 6.569 16 C 0.121 3.879 17 N -0.511 5.511 18 C 0.206 3.794 19 N -0.295 5.295 20 C 0.157 3.843 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.142 4.142 26 C -0.102 4.102 27 N -0.271 5.271 28 H 0.050 0.950 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.267 0.733 34 H 0.407 0.593 35 H 0.285 0.715 36 H 0.116 0.884 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 14.719 20.299 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.020 0.980 5 C -0.590 4.590 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.330 5.330 14 C 0.377 3.623 15 O -0.447 6.447 16 C -0.158 4.158 17 N -0.237 5.237 18 C -0.088 4.088 19 N -0.090 5.090 20 C 0.040 3.960 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.160 4.160 26 C -0.120 4.120 27 N -0.112 5.112 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.300 0.700 36 H 0.134 0.866 37 H 0.189 0.811 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.465 14.476 19.005 26.947 hybrid contribution 0.815 -0.021 -0.297 0.868 sum -11.650 14.456 18.708 26.357 Atomic orbital electron populations 1.21680 0.97112 0.99332 1.00001 1.21792 0.93618 0.98836 1.01610 1.18512 0.94059 0.89307 0.80430 0.97970 1.21506 0.91066 1.39413 1.06980 0.91214 1.25770 1.03554 0.94150 0.94783 1.70037 1.37215 1.38118 1.09783 0.85383 0.78753 0.78462 0.77654 1.18843 1.20887 1.19725 1.46039 1.14261 1.54597 1.18108 1.16791 0.82671 0.78475 0.84344 1.90750 1.52631 1.61139 1.40162 1.23509 0.90278 1.05793 0.96246 1.71220 1.31763 1.20211 1.00493 1.27587 0.82240 0.96590 1.02389 1.47927 1.15347 1.38200 1.07567 1.21451 0.88217 0.90636 0.95745 1.19902 0.98707 0.95139 0.99348 1.21419 0.98834 0.91894 0.99892 1.21511 0.97823 1.00018 0.96072 1.21562 0.96158 0.97919 0.97949 1.21434 1.01153 0.93456 0.99947 1.21275 0.97114 0.98804 0.94842 1.74243 1.22475 1.13223 1.01225 0.93110 0.95248 0.94668 0.93983 0.90311 0.92430 0.75784 0.69953 0.86625 0.81082 0.83085 0.83761 0.84289 0.85126 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.51 71.98 0.61 -5.39 16 2 C -0.12 -6.24 5.45 30.60 0.17 -6.08 16 3 C 0.28 15.36 2.24 44.25 0.10 15.46 16 4 H 0.00 0.15 7.58 -2.39 -0.02 0.14 16 5 C -0.55 -30.71 8.73 25.60 0.22 -30.48 16 6 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -53.35 11.29 21.45 0.24 -53.11 16 9 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.68 -32.55 5.02 -448.95 -2.25 -34.80 16 14 C 0.59 28.34 6.40 86.79 0.56 28.89 16 15 O -0.57 -30.96 14.22 -3.91 -0.06 -31.02 16 16 C 0.12 4.71 7.96 137.13 1.09 5.80 16 17 N -0.51 -15.89 11.09 -193.03 -2.14 -18.03 16 18 C 0.21 3.86 12.57 180.30 2.27 6.13 16 19 N -0.29 -6.24 3.41 -355.63 -1.21 -7.45 16 20 C 0.16 1.70 6.57 85.63 0.56 2.26 16 21 C -0.13 -2.11 5.24 -19.87 -0.10 -2.21 16 22 C -0.10 -1.42 9.70 22.27 0.22 -1.21 16 23 C -0.14 -2.04 10.05 22.27 0.22 -1.82 16 24 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 25 C -0.14 -2.75 10.05 22.27 0.22 -2.52 16 26 C -0.10 -2.05 9.70 22.27 0.22 -1.84 16 27 N -0.27 -9.25 11.83 -52.44 -0.62 -9.87 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 30 H 0.03 1.69 5.64 -2.38 -0.01 1.68 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 4.48 5.95 -2.39 -0.01 4.47 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.41 17.74 8.25 -92.71 -0.76 16.97 16 35 H 0.29 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.12 1.05 8.09 -2.39 -0.02 1.03 16 37 H 0.17 -0.04 8.00 -2.38 -0.02 -0.06 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -81.40 358.27 3.29 -78.11 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.28 Total: 24.28 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 7.03 Total: 6.66 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.99 Total: -123.27 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.06 Total: -31.02 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -81.40 3.29 -78.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197192109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.311 kcal (2) G-P(sol) polarization free energy of solvation -81.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds