Wall clock time and date at job start Tue Mar 31 2020 10:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21574 * 120.00451 * 359.97438 * 14 13 3 16 16 C 1.47673 * 119.99785 * 179.97438 * 14 13 3 17 17 C 1.39708 * 120.08029 * 359.72776 * 16 14 13 18 18 C 1.37725 * 119.92054 * 179.69394 * 17 16 14 19 19 C 1.39047 * 120.08072 * 0.57817 * 18 17 16 20 20 N 1.39863 * 119.92371 * 179.74334 * 19 18 17 21 21 N 1.40447 * 126.84921 * 144.66610 * 20 19 18 22 22 C 1.30728 * 106.81156 * 179.86264 * 21 20 19 23 23 N 1.33293 * 109.01079 * 0.40215 * 22 21 20 24 24 C 1.30817 * 109.84956 * 359.73278 * 23 22 21 25 25 C 1.50699 * 125.98799 * 180.02562 * 24 23 22 26 26 C 1.39046 * 120.15299 * 359.71591 * 19 18 17 27 27 C 1.37724 * 120.08138 * 359.97438 * 26 19 18 28 28 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 30 30 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 32 32 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 33 33 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 35 35 H 1.08000 * 120.03351 * 359.97438 * 17 16 14 36 36 H 1.07997 * 119.96081 * 180.29714 * 18 17 16 37 37 H 1.08001 * 125.49079 * 180.09753 * 22 21 20 38 38 H 1.09009 * 109.46800 * 269.97328 * 25 24 23 39 39 H 1.08999 * 109.47245 * 29.97698 * 25 24 23 40 40 H 1.08999 * 109.47000 * 149.98468 * 25 24 23 41 41 H 1.08001 * 119.95811 * 179.97438 * 26 19 18 42 42 H 1.08006 * 120.03912 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3382 2.6316 0.4505 16 6 0.0619 3.3180 2.6466 17 6 0.9577 3.3480 3.7183 18 6 0.6000 3.9669 4.8955 19 6 -0.6554 4.5510 5.0223 20 7 -1.0173 5.1740 6.2211 21 7 -1.8142 6.3212 6.3671 22 6 -1.9036 6.5589 7.6495 23 7 -1.2050 5.6368 8.3116 24 6 -0.6658 4.7963 7.4666 25 6 0.1967 3.6131 7.8229 26 6 -1.5518 4.5177 3.9599 27 6 -1.1985 3.9060 2.7775 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1426 -0.6139 34 1 2.2853 2.1184 1.9978 35 1 1.9312 2.8903 3.6221 36 1 1.2938 3.9947 5.7227 37 1 -2.4508 7.3740 8.0995 38 1 1.2420 3.9212 7.8524 39 1 -0.0971 3.2305 8.8004 40 1 0.0694 2.8318 7.0736 41 1 -2.5263 4.9720 4.0619 42 1 -1.8955 3.8802 1.9528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197757527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:49 Heat of formation + Delta-G solvation = 59.198501 kcal Electronic energy + Delta-G solvation = -25296.161029 eV Core-core repulsion = 21663.298146 eV Total energy + Delta-G solvation = -3632.862883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.47482 -41.35271 -39.72665 -37.12286 -35.41189 -34.51009 -33.89576 -33.31745 -32.08521 -30.90315 -29.32423 -28.90762 -25.62786 -24.44426 -24.01873 -22.99613 -22.34490 -21.59851 -21.22455 -20.05449 -19.15441 -18.44854 -17.57129 -17.11353 -16.65324 -16.23375 -16.08653 -15.66309 -15.56561 -15.07008 -14.95547 -14.74518 -14.55912 -14.44620 -14.30254 -13.98397 -13.87508 -13.77600 -13.66781 -13.40914 -12.97785 -12.72739 -12.48533 -12.31275 -12.27948 -11.71350 -11.67970 -11.49333 -11.25976 -11.00620 -10.86536 -10.74923 -10.65209 -10.27248 -9.92393 -9.64380 -8.77279 -6.46033 -0.69502 0.12103 0.56559 1.04964 1.42136 1.51814 1.68570 1.75296 1.81207 2.34385 2.40748 2.66784 3.04125 3.08327 3.38638 3.60570 3.69052 3.72940 3.82056 4.05974 4.21128 4.29633 4.35465 4.38608 4.51831 4.57334 4.61209 4.75670 4.82058 4.91412 4.92739 4.97731 5.08029 5.13858 5.17739 5.22237 5.29546 5.30983 5.44570 5.54466 5.60836 5.65610 5.86572 6.01217 6.52225 6.78347 6.89424 7.26659 7.37527 8.62672 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.002810 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.864815 B = 9960.836661 C =10412.044125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.026 0.974 5 C -0.603 4.603 6 H 0.045 0.955 7 C -0.008 4.008 8 N -0.935 5.935 9 Si 1.076 2.924 10 H -0.257 1.257 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.693 5.693 14 C 0.543 3.457 15 O -0.575 6.575 16 C -0.135 4.135 17 C -0.056 4.056 18 C -0.119 4.119 19 C 0.155 3.845 20 N -0.344 5.344 21 N -0.349 5.349 22 C 0.208 3.792 23 N -0.561 5.561 24 C 0.288 3.712 25 C -0.088 4.088 26 C -0.114 4.114 27 C -0.046 4.046 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.259 0.741 34 H 0.404 0.596 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.254 0.746 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 5.179 19.225 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.044 0.956 5 C -0.641 4.641 6 H 0.063 0.937 7 C -0.208 4.208 8 N -0.571 5.571 9 Si 0.900 3.100 10 H -0.182 1.182 11 H -0.191 1.191 12 H -0.216 1.216 13 N -0.342 5.342 14 C 0.331 3.669 15 O -0.457 6.457 16 C -0.138 4.138 17 C -0.076 4.076 18 C -0.139 4.139 19 C 0.062 3.938 20 N -0.128 5.128 21 N -0.174 5.174 22 C -0.094 4.094 23 N -0.289 5.289 24 C 0.014 3.986 25 C -0.147 4.147 26 C -0.134 4.134 27 C -0.065 4.065 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.240 0.760 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.269 0.731 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.158 0.842 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.106 4.943 16.846 21.909 hybrid contribution 0.603 0.905 1.575 1.914 sum -12.504 5.848 18.421 23.019 Atomic orbital electron populations 1.21788 0.95387 1.00611 1.01535 1.22161 0.95526 0.98182 1.01481 1.18963 0.93651 0.89870 0.83424 0.95627 1.22346 0.91389 1.46523 1.03878 0.93696 1.26757 0.97655 0.93707 1.02694 1.70934 1.05381 1.44724 1.36082 0.83587 0.74441 0.78565 0.73416 1.18200 1.19050 1.21580 1.46001 1.15187 1.55647 1.17371 1.18569 0.82007 0.78496 0.87785 1.90735 1.51897 1.61125 1.41905 1.20138 0.96713 1.02768 0.94214 1.21407 0.99463 0.96032 0.90661 1.21197 0.93700 0.99335 0.99660 1.17811 0.94761 0.96865 0.84343 1.47624 1.38491 1.20976 1.05759 1.78181 1.16283 1.01793 1.21116 1.26831 0.96691 0.98856 0.87037 1.70620 1.17276 1.07401 1.33629 1.25446 0.95633 0.97538 0.79947 1.20891 0.98194 0.90086 1.05486 1.20932 1.00042 1.00472 0.91915 1.21158 0.95054 0.93195 0.97112 0.92209 0.93122 0.94178 0.92995 0.91764 0.93192 0.75980 0.82368 0.81248 0.73054 0.86294 0.86906 0.88221 0.84151 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.52 71.98 0.61 -4.37 16 2 C -0.13 -5.53 5.20 30.59 0.16 -5.37 16 3 C 0.25 11.08 1.81 44.24 0.08 11.16 16 4 H 0.03 1.30 6.07 -2.39 -0.01 1.29 16 5 C -0.60 -31.46 9.09 25.60 0.23 -31.23 16 6 H 0.04 2.45 7.95 -2.91 -0.02 2.42 16 7 C -0.01 -0.45 5.42 84.65 0.46 0.01 16 8 N -0.94 -55.49 13.70 21.45 0.29 -55.20 16 9 Si 1.08 49.77 25.39 68.60 1.74 51.51 16 10 H -0.26 -10.87 6.73 99.48 0.67 -10.20 16 11 H -0.27 -11.87 6.38 99.48 0.63 -11.24 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.69 -25.49 4.98 -449.13 -2.23 -27.72 16 14 C 0.54 19.10 6.35 86.74 0.55 19.65 16 15 O -0.57 -23.96 13.48 -3.95 -0.05 -24.01 16 16 C -0.13 -3.56 5.88 -20.08 -0.12 -3.67 16 17 C -0.06 -1.10 9.53 22.50 0.21 -0.89 16 18 C -0.12 -1.93 8.31 22.34 0.19 -1.74 16 19 C 0.15 3.14 6.31 38.25 0.24 3.38 16 20 N -0.34 -7.24 3.74 -179.21 -0.67 -7.91 16 21 N -0.35 -8.04 12.48 -61.21 -0.76 -8.81 16 22 C 0.21 3.88 13.03 180.74 2.35 6.23 16 23 N -0.56 -11.32 11.19 -191.47 -2.14 -13.46 16 24 C 0.29 5.11 7.82 138.11 1.08 6.19 16 25 C -0.09 -0.74 8.69 71.24 0.62 -0.12 16 26 C -0.11 -2.49 9.77 22.34 0.22 -2.27 16 27 C -0.05 -1.12 9.58 22.50 0.22 -0.91 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.84 5.64 -2.39 -0.01 1.82 16 30 H 0.04 1.56 7.87 -2.38 -0.02 1.54 16 31 H 0.05 2.22 4.43 -2.39 -0.01 2.21 16 32 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.26 15.30 8.72 -92.71 -0.81 14.49 16 34 H 0.40 12.64 6.55 -92.71 -0.61 12.03 16 35 H 0.16 2.53 6.39 -2.91 -0.02 2.51 16 36 H 0.17 1.66 6.14 -2.91 -0.02 1.64 16 37 H 0.25 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.12 0.52 7.77 -2.38 -0.02 0.50 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.67 6.93 -2.39 -0.02 0.66 16 41 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.14 3.59 7.64 -2.91 -0.02 3.56 16 Total: -1.00 -72.17 343.11 3.59 -68.57 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.32 Total: 20.97 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 7.11 Total: -3.94 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -5.52 Total: -113.10 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 1.74 Total: 51.51 kcal Total: -72.17 3.59 -68.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197757527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.769 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds