Wall clock time and date at job start Tue Mar 31 2020 10:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 H 1.09000 * 109.46817 * 304.99529 * 3 2 1 5 5 C 1.50698 * 109.47016 * 184.99813 * 3 2 1 6 6 H 1.07993 * 120.00214 * 239.99510 * 5 3 2 7 7 C 1.37877 * 119.99869 * 60.00169 * 5 3 2 8 8 N 1.31516 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00020 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46924 * 59.99950 * 9 7 5 11 11 H 1.48497 * 109.47201 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47174 * 299.99934 * 9 7 5 13 13 N 1.46504 * 109.47267 * 64.99889 * 3 2 1 14 14 C 1.34779 * 119.99745 * 275.00009 * 13 3 2 15 15 O 1.21604 * 120.00279 * 0.02562 * 14 13 3 16 16 C 1.47409 * 119.99629 * 179.97438 * 14 13 3 17 17 N 1.31612 * 125.86554 * 0.20544 * 16 14 13 18 18 C 1.33098 * 109.09643 * 180.26945 * 17 16 14 19 19 C 1.35560 * 108.34797 * 359.71997 * 18 17 16 20 20 N 1.35407 * 107.16209 * 0.02562 * 19 18 17 21 21 C 1.46495 * 126.43870 * 180.02562 * 20 19 18 22 22 C 1.50702 * 109.47115 * 265.02269 * 21 20 19 23 23 C 1.38225 * 119.61833 * 124.99919 * 22 21 20 24 24 C 1.38635 * 119.15939 * 180.02562 * 23 22 21 25 25 C 1.38675 * 118.41956 * 0.02562 * 24 23 22 26 26 C 1.38186 * 119.16332 * 0.27967 * 25 24 23 27 27 N 1.31860 * 119.61626 * 305.02597 * 22 21 20 28 28 H 1.08998 * 109.47294 * 299.99716 * 1 2 3 29 29 H 1.08994 * 109.47523 * 60.00297 * 1 2 3 30 30 H 1.09001 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47199 * 239.99553 * 2 1 3 32 32 H 1.09006 * 109.47121 * 119.99870 * 2 1 3 33 33 H 0.96998 * 119.99975 * 180.02562 * 8 7 5 34 34 H 0.96997 * 119.99732 * 95.00041 * 13 3 2 35 35 H 1.08002 * 125.82641 * 179.70125 * 18 17 16 36 36 H 1.08004 * 126.41834 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47315 * 145.02516 * 21 20 19 38 38 H 1.09000 * 109.47226 * 25.02381 * 21 20 19 39 39 H 1.07997 * 120.42090 * 0.02562 * 23 22 21 40 40 H 1.07998 * 120.78847 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.41399 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.61418 * 179.70216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8813 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3978 0.2167 -2.6503 12 1 6.4994 2.2815 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3418 2.6318 0.4319 16 6 0.0448 3.3230 2.6266 17 7 0.7915 3.4279 3.7054 18 6 0.1097 4.0784 4.6453 19 6 -1.1072 4.4016 4.1432 20 7 -1.1531 3.9325 2.8738 21 6 -2.2774 4.0517 1.9422 22 6 -3.1201 2.8041 2.0096 23 6 -4.4727 2.9069 2.2752 24 6 -5.2388 1.7530 2.3356 25 6 -4.6128 0.5335 2.1262 26 6 -3.2548 0.5085 1.8719 27 7 -2.5584 1.6271 1.8151 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0618 -2.9494 34 1 2.2719 2.1232 1.9977 35 1 0.4653 4.3091 5.6387 36 1 -1.8930 4.9336 4.6589 37 1 -1.8974 4.1791 0.9285 38 1 -2.8844 4.9153 2.2138 39 1 -4.9269 3.8738 2.4337 40 1 -6.2979 1.8028 2.5409 41 1 -5.1787 -0.3856 2.1663 42 1 -2.7590 -0.4376 1.7125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198287176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:41 Heat of formation + Delta-G solvation = 67.022525 kcal Electronic energy + Delta-G solvation = -26505.792144 eV Core-core repulsion = 22873.268536 eV Total energy + Delta-G solvation = -3632.523608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02952 -40.14003 -38.47019 -35.12621 -34.50147 -32.49220 -32.25246 -31.38666 -30.85177 -29.29756 -27.08369 -26.74178 -23.66278 -23.47401 -22.65597 -22.06081 -21.08777 -19.77013 -19.09763 -17.80775 -17.05185 -16.53838 -16.04978 -15.95819 -15.39233 -15.15689 -14.93377 -14.36251 -14.19876 -14.04478 -13.66823 -13.43419 -13.21834 -13.13872 -12.91321 -12.55005 -12.44398 -11.94349 -11.77351 -11.37689 -11.14352 -10.89949 -10.72403 -10.23840 -10.05449 -9.96715 -9.92386 -9.78624 -9.50715 -9.24684 -9.20372 -9.05321 -8.92595 -8.39521 -8.29339 -7.65212 -6.03364 -4.11617 0.90241 1.19465 1.81631 2.75741 3.01580 3.33510 3.37540 3.40317 3.76086 4.04003 4.15941 4.22774 4.42921 4.49568 4.73050 4.75965 4.80518 4.96464 5.02796 5.21533 5.28290 5.30695 5.49003 5.57833 5.63058 5.67642 5.90864 6.01160 6.40954 6.52059 6.54723 6.66285 6.81136 6.83539 7.13772 7.23891 7.33306 7.50431 7.58409 7.73577 7.84171 7.99310 8.01345 8.16671 8.28348 8.82018 8.88417 9.24037 9.55270 11.01895 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.004184 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.167279 B = 6690.592935 C = 7873.964402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.275 3.725 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.685 5.685 14 C 0.592 3.408 15 O -0.531 6.531 16 C 0.183 3.817 17 N -0.457 5.457 18 C -0.030 4.030 19 C -0.052 4.052 20 N -0.414 5.414 21 C 0.155 3.845 22 C 0.109 3.891 23 C -0.165 4.165 24 C -0.080 4.080 25 C -0.172 4.172 26 C 0.107 3.893 27 N -0.432 5.432 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.015 0.985 31 H 0.097 0.903 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.398 0.602 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.222 5.386 11.323 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.332 5.332 14 C 0.374 3.626 15 O -0.408 6.408 16 C -0.078 4.078 17 N -0.178 5.178 18 C -0.182 4.182 19 C -0.189 4.189 20 N -0.094 5.094 21 C 0.032 3.968 22 C -0.030 4.030 23 C -0.185 4.185 24 C -0.106 4.106 25 C -0.192 4.192 26 C -0.051 4.051 27 N -0.140 5.140 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.188 0.812 36 H 0.192 0.808 37 H 0.146 0.854 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.151 4.902 10.158 19.699 hybrid contribution -0.635 0.277 0.517 0.864 sum -16.786 5.179 10.675 20.556 Atomic orbital electron populations 1.21894 0.97994 0.97684 1.02169 1.21923 0.92971 0.99592 1.02088 1.18807 0.94140 0.89209 0.80487 0.93281 1.21236 0.90778 1.38790 1.06227 0.91986 1.24858 0.98497 0.94847 0.95377 1.69894 1.35101 1.37789 1.09376 0.86524 0.85030 0.78308 0.77340 1.20133 1.21247 1.20196 1.46243 1.13726 1.54450 1.18827 1.16400 0.83386 0.79266 0.83560 1.90754 1.51189 1.60199 1.38673 1.23394 0.83521 1.03321 0.97608 1.70290 1.30780 1.17209 0.99536 1.22319 0.92010 1.03886 1.00030 1.22711 1.02070 1.08023 0.86083 1.44958 1.12858 1.40256 1.11355 1.20859 0.85693 0.94046 0.96158 1.21181 0.91456 0.93874 0.96465 1.21875 0.94502 0.99737 1.02397 1.21495 1.00149 0.92305 0.96639 1.22223 0.96585 0.98892 1.01490 1.22898 0.91073 0.96968 0.94162 1.67603 1.39707 0.97657 1.09028 0.92312 0.93624 0.96585 0.88496 0.95119 0.92650 0.76858 0.81178 0.80806 0.85371 0.87857 0.84934 0.84904 0.84846 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 7.14 2.24 -69.08 -0.15 6.98 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.53 8.73 -34.44 -0.30 -14.83 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.09 11.29 55.43 0.63 -24.46 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -15.65 5.02 -56.01 -0.28 -15.93 16 14 C 0.59 12.72 6.25 -12.53 -0.08 12.64 16 15 O -0.53 -12.00 10.69 5.27 0.06 -11.95 16 16 C 0.18 3.42 7.62 -154.53 -1.18 2.24 16 17 N -0.46 -8.29 10.89 -11.26 -0.12 -8.41 16 18 C -0.03 -0.43 11.85 -17.96 -0.21 -0.64 16 19 C -0.05 -0.64 11.53 -16.93 -0.20 -0.84 16 20 N -0.41 -6.16 2.70 -115.87 -0.31 -6.47 16 21 C 0.16 1.95 5.85 -5.20 -0.03 1.92 16 22 C 0.11 1.44 6.39 -82.58 -0.53 0.92 16 23 C -0.16 -1.61 9.71 -39.44 -0.38 -1.99 16 24 C -0.08 -0.72 10.18 -39.27 -0.40 -1.12 16 25 C -0.17 -1.74 10.11 -39.44 -0.40 -2.14 16 26 C 0.11 1.43 11.18 -17.55 -0.20 1.23 16 27 N -0.43 -6.87 8.16 -9.47 -0.08 -6.95 16 28 H 0.06 1.30 5.13 -51.93 -0.27 1.04 16 29 H 0.04 1.10 7.84 -51.93 -0.41 0.69 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.40 8.74 8.22 -40.82 -0.34 8.41 16 35 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.13 1.88 6.65 -51.93 -0.35 1.54 16 38 H 0.10 0.83 7.86 -51.93 -0.41 0.42 16 39 H 0.13 0.87 7.95 -52.49 -0.42 0.45 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -32.90 350.30 -9.22 -42.11 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.38 Total: 10.71 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -3.98 Total: -0.06 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.17 Total: -62.22 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.06 Total: -11.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.90 -9.22 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198287176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.133 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds