Wall clock time and date at job start Tue Mar 31 2020 10:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47004 * 2 1
4 4 H 1.09000 * 109.46817 * 304.99529 * 3 2 1
5 5 C 1.50698 * 109.47016 * 184.99813 * 3 2 1
6 6 H 1.07993 * 120.00214 * 239.99510 * 5 3 2
7 7 C 1.37877 * 119.99869 * 60.00169 * 5 3 2
8 8 N 1.31516 * 120.00118 * 359.97438 * 7 5 3
9 9 Si 1.86802 * 120.00020 * 179.97438 * 7 5 3
10 10 H 1.48507 * 109.46924 * 59.99950 * 9 7 5
11 11 H 1.48497 * 109.47201 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47174 * 299.99934 * 9 7 5
13 13 N 1.46504 * 109.47267 * 64.99889 * 3 2 1
14 14 C 1.34779 * 119.99745 * 275.00009 * 13 3 2
15 15 O 1.21604 * 120.00279 * 0.02562 * 14 13 3
16 16 C 1.47409 * 119.99629 * 179.97438 * 14 13 3
17 17 N 1.31612 * 125.86554 * 0.20544 * 16 14 13
18 18 C 1.33098 * 109.09643 * 180.26945 * 17 16 14
19 19 C 1.35560 * 108.34797 * 359.71997 * 18 17 16
20 20 N 1.35407 * 107.16209 * 0.02562 * 19 18 17
21 21 C 1.46495 * 126.43870 * 180.02562 * 20 19 18
22 22 C 1.50702 * 109.47115 * 265.02269 * 21 20 19
23 23 C 1.38225 * 119.61833 * 124.99919 * 22 21 20
24 24 C 1.38635 * 119.15939 * 180.02562 * 23 22 21
25 25 C 1.38675 * 118.41956 * 0.02562 * 24 23 22
26 26 C 1.38186 * 119.16332 * 0.27967 * 25 24 23
27 27 N 1.31860 * 119.61626 * 305.02597 * 22 21 20
28 28 H 1.08998 * 109.47294 * 299.99716 * 1 2 3
29 29 H 1.08994 * 109.47523 * 60.00297 * 1 2 3
30 30 H 1.09001 * 109.47096 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47199 * 239.99553 * 2 1 3
32 32 H 1.09006 * 109.47121 * 119.99870 * 2 1 3
33 33 H 0.96998 * 119.99975 * 180.02562 * 8 7 5
34 34 H 0.96997 * 119.99732 * 95.00041 * 13 3 2
35 35 H 1.08002 * 125.82641 * 179.70125 * 18 17 16
36 36 H 1.08004 * 126.41834 * 180.02562 * 19 18 17
37 37 H 1.09003 * 109.47315 * 145.02516 * 21 20 19
38 38 H 1.09000 * 109.47226 * 25.02381 * 21 20 19
39 39 H 1.07997 * 120.42090 * 0.02562 * 23 22 21
40 40 H 1.07998 * 120.78847 * 180.02562 * 24 23 22
41 41 H 1.08002 * 120.41399 * 179.97438 * 25 24 23
42 42 H 1.07999 * 119.61418 * 179.70216 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8419
5 6 3.5418 1.4443 -0.1238
6 1 4.1471 1.8889 0.6523
7 6 4.1432 0.8784 -1.2279
8 7 3.4062 0.3366 -2.1728
9 14 6.0049 0.8813 -1.3817
10 1 6.5974 0.1473 -0.2348
11 1 6.3978 0.2167 -2.6503
12 1 6.4994 2.2815 -1.3821
13 7 1.6524 2.0975 1.2518
14 6 0.4350 2.6644 1.3669
15 8 -0.3418 2.6318 0.4319
16 6 0.0448 3.3230 2.6266
17 7 0.7915 3.4279 3.7054
18 6 0.1097 4.0784 4.6453
19 6 -1.1072 4.4016 4.1432
20 7 -1.1531 3.9325 2.8738
21 6 -2.2774 4.0517 1.9422
22 6 -3.1201 2.8041 2.0096
23 6 -4.4727 2.9069 2.2752
24 6 -5.2388 1.7530 2.3356
25 6 -4.6128 0.5335 2.1262
26 6 -3.2548 0.5085 1.8719
27 7 -2.5584 1.6271 1.8151
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5137 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 3.8293 -0.0618 -2.9494
34 1 2.2719 2.1232 1.9977
35 1 0.4653 4.3091 5.6387
36 1 -1.8930 4.9336 4.6589
37 1 -1.8974 4.1791 0.9285
38 1 -2.8844 4.9153 2.2138
39 1 -4.9269 3.8738 2.4337
40 1 -6.2979 1.8028 2.5409
41 1 -5.1787 -0.3856 2.1663
42 1 -2.7590 -0.4376 1.7125
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001198287176.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:41
Heat of formation + Delta-G solvation = 67.022525 kcal
Electronic energy + Delta-G solvation = -26505.792144 eV
Core-core repulsion = 22873.268536 eV
Total energy + Delta-G solvation = -3632.523608 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-42.02952 -40.14003 -38.47019 -35.12621 -34.50147 -32.49220 -32.25246 -31.38666
-30.85177 -29.29756 -27.08369 -26.74178 -23.66278 -23.47401 -22.65597 -22.06081
-21.08777 -19.77013 -19.09763 -17.80775 -17.05185 -16.53838 -16.04978 -15.95819
-15.39233 -15.15689 -14.93377 -14.36251 -14.19876 -14.04478 -13.66823 -13.43419
-13.21834 -13.13872 -12.91321 -12.55005 -12.44398 -11.94349 -11.77351 -11.37689
-11.14352 -10.89949 -10.72403 -10.23840 -10.05449 -9.96715 -9.92386 -9.78624
-9.50715 -9.24684 -9.20372 -9.05321 -8.92595 -8.39521 -8.29339 -7.65212
-6.03364 -4.11617 0.90241 1.19465 1.81631 2.75741 3.01580 3.33510
3.37540 3.40317 3.76086 4.04003 4.15941 4.22774 4.42921 4.49568
4.73050 4.75965 4.80518 4.96464 5.02796 5.21533 5.28290 5.30695
5.49003 5.57833 5.63058 5.67642 5.90864 6.01160 6.40954 6.52059
6.54723 6.66285 6.81136 6.83539 7.13772 7.23891 7.33306 7.50431
7.58409 7.73577 7.84171 7.99310 8.01345 8.16671 8.28348 8.82018
8.88417 9.24037 9.55270 11.01895
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.017026 B = 0.004184 C = 0.003555
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.167279 B = 6690.592935 C = 7873.964402
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.127 4.127
3 C 0.275 3.725
4 H 0.049 0.951
5 C -0.532 4.532
6 H 0.062 0.938
7 C 0.067 3.933
8 N -0.884 5.884
9 Si 0.900 3.100
10 H -0.276 1.276
11 H -0.287 1.287
12 H -0.276 1.276
13 N -0.685 5.685
14 C 0.592 3.408
15 O -0.531 6.531
16 C 0.183 3.817
17 N -0.457 5.457
18 C -0.030 4.030
19 C -0.052 4.052
20 N -0.414 5.414
21 C 0.155 3.845
22 C 0.109 3.891
23 C -0.165 4.165
24 C -0.080 4.080
25 C -0.172 4.172
26 C 0.107 3.893
27 N -0.432 5.432
28 H 0.058 0.942
29 H 0.045 0.955
30 H 0.015 0.985
31 H 0.097 0.903
32 H 0.030 0.970
33 H 0.264 0.736
34 H 0.398 0.602
35 H 0.171 0.829
36 H 0.175 0.825
37 H 0.128 0.872
38 H 0.103 0.897
39 H 0.133 0.867
40 H 0.133 0.867
41 H 0.134 0.866
42 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.222 5.386 11.323 21.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.166 4.166
3 C 0.174 3.826
4 H 0.067 0.933
5 C -0.570 4.570
6 H 0.080 0.920
7 C -0.136 4.136
8 N -0.522 5.522
9 Si 0.728 3.272
10 H -0.201 1.201
11 H -0.212 1.212
12 H -0.202 1.202
13 N -0.332 5.332
14 C 0.374 3.626
15 O -0.408 6.408
16 C -0.078 4.078
17 N -0.178 5.178
18 C -0.182 4.182
19 C -0.189 4.189
20 N -0.094 5.094
21 C 0.032 3.968
22 C -0.030 4.030
23 C -0.185 4.185
24 C -0.106 4.106
25 C -0.192 4.192
26 C -0.051 4.051
27 N -0.140 5.140
28 H 0.077 0.923
29 H 0.064 0.936
30 H 0.034 0.966
31 H 0.115 0.885
32 H 0.049 0.951
33 H 0.074 0.926
34 H 0.231 0.769
35 H 0.188 0.812
36 H 0.192 0.808
37 H 0.146 0.854
38 H 0.121 0.879
39 H 0.151 0.849
40 H 0.151 0.849
41 H 0.152 0.848
42 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -16.151 4.902 10.158 19.699
hybrid contribution -0.635 0.277 0.517 0.864
sum -16.786 5.179 10.675 20.556
Atomic orbital electron populations
1.21894 0.97994 0.97684 1.02169 1.21923 0.92971 0.99592 1.02088
1.18807 0.94140 0.89209 0.80487 0.93281 1.21236 0.90778 1.38790
1.06227 0.91986 1.24858 0.98497 0.94847 0.95377 1.69894 1.35101
1.37789 1.09376 0.86524 0.85030 0.78308 0.77340 1.20133 1.21247
1.20196 1.46243 1.13726 1.54450 1.18827 1.16400 0.83386 0.79266
0.83560 1.90754 1.51189 1.60199 1.38673 1.23394 0.83521 1.03321
0.97608 1.70290 1.30780 1.17209 0.99536 1.22319 0.92010 1.03886
1.00030 1.22711 1.02070 1.08023 0.86083 1.44958 1.12858 1.40256
1.11355 1.20859 0.85693 0.94046 0.96158 1.21181 0.91456 0.93874
0.96465 1.21875 0.94502 0.99737 1.02397 1.21495 1.00149 0.92305
0.96639 1.22223 0.96585 0.98892 1.01490 1.22898 0.91073 0.96968
0.94162 1.67603 1.39707 0.97657 1.09028 0.92312 0.93624 0.96585
0.88496 0.95119 0.92650 0.76858 0.81178 0.80806 0.85371 0.87857
0.84934 0.84904 0.84846 0.82679
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.18 8.51 37.16 0.32 -2.86 16
2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16
3 C 0.27 7.14 2.24 -69.08 -0.15 6.98 16
4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16
5 C -0.53 -14.53 8.73 -34.44 -0.30 -14.83 16
6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16
7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16
8 N -0.88 -25.09 11.29 55.43 0.63 -24.46 16
9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16
10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16
11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
13 N -0.68 -15.65 5.02 -56.01 -0.28 -15.93 16
14 C 0.59 12.72 6.25 -12.53 -0.08 12.64 16
15 O -0.53 -12.00 10.69 5.27 0.06 -11.95 16
16 C 0.18 3.42 7.62 -154.53 -1.18 2.24 16
17 N -0.46 -8.29 10.89 -11.26 -0.12 -8.41 16
18 C -0.03 -0.43 11.85 -17.96 -0.21 -0.64 16
19 C -0.05 -0.64 11.53 -16.93 -0.20 -0.84 16
20 N -0.41 -6.16 2.70 -115.87 -0.31 -6.47 16
21 C 0.16 1.95 5.85 -5.20 -0.03 1.92 16
22 C 0.11 1.44 6.39 -82.58 -0.53 0.92 16
23 C -0.16 -1.61 9.71 -39.44 -0.38 -1.99 16
24 C -0.08 -0.72 10.18 -39.27 -0.40 -1.12 16
25 C -0.17 -1.74 10.11 -39.44 -0.40 -2.14 16
26 C 0.11 1.43 11.18 -17.55 -0.20 1.23 16
27 N -0.43 -6.87 8.16 -9.47 -0.08 -6.95 16
28 H 0.06 1.30 5.13 -51.93 -0.27 1.04 16
29 H 0.04 1.10 7.84 -51.93 -0.41 0.69 16
30 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16
31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16
32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
34 H 0.40 8.74 8.22 -40.82 -0.34 8.41 16
35 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16
36 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16
37 H 0.13 1.88 6.65 -51.93 -0.35 1.54 16
38 H 0.10 0.83 7.86 -51.93 -0.41 0.42 16
39 H 0.13 0.87 7.95 -52.49 -0.42 0.45 16
40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16
41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
42 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16
LS Contribution 350.30 15.07 5.28 5.28
Total: -1.00 -32.90 350.30 -9.22 -42.11
By element:
Atomic # 1 Polarization: 16.09 SS G_CDS: -5.38 Total: 10.71 kcal
Atomic # 6 Polarization: 3.92 SS G_CDS: -3.98 Total: -0.06 kcal
Atomic # 7 Polarization: -62.05 SS G_CDS: -0.17 Total: -62.22 kcal
Atomic # 8 Polarization: -12.00 SS G_CDS: 0.06 Total: -11.95 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -32.90 -9.22 -42.11 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001198287176.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.133 kcal
(2) G-P(sol) polarization free energy of solvation -32.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds