Wall clock time and date at job start Tue Mar 31 2020 10:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 H 1.08999 * 109.47363 * 305.00489 * 3 2 1 5 5 C 1.50704 * 109.46893 * 185.00022 * 3 2 1 6 6 H 1.07999 * 119.99747 * 240.00241 * 5 3 2 7 7 C 1.37868 * 119.99954 * 60.00403 * 5 3 2 8 8 N 1.31511 * 120.00144 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46798 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47162 * 120.00021 * 9 7 5 12 12 H 1.48496 * 109.47725 * 240.00513 * 9 7 5 13 13 N 1.46500 * 109.46456 * 65.00625 * 3 2 1 14 14 C 1.34778 * 119.99964 * 274.98999 * 13 3 2 15 15 O 1.21627 * 119.99876 * 0.02562 * 14 13 3 16 16 C 1.47327 * 120.00233 * 180.02562 * 14 13 3 17 17 C 1.36418 * 126.23366 * 180.02562 * 16 14 13 18 18 N 1.35377 * 106.86967 * 180.02562 * 17 16 14 19 19 C 1.46501 * 126.13615 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46945 * 90.00197 * 19 18 17 21 21 C 1.38227 * 119.62024 * 124.97880 * 20 19 18 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 19 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 304.99632 * 20 19 18 26 26 C 1.35846 * 107.72943 * 0.25773 * 18 17 16 27 27 N 1.30176 * 109.00205 * 359.56190 * 26 18 17 28 28 H 1.08992 * 109.47525 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47162 * 299.99988 * 1 2 3 30 30 H 1.09004 * 109.47364 * 59.99328 * 1 2 3 31 31 H 1.09002 * 109.47071 * 240.00791 * 2 1 3 32 32 H 1.08997 * 109.47049 * 120.00447 * 2 1 3 33 33 H 0.97006 * 120.00585 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00815 * 95.00029 * 13 3 2 35 35 H 1.08000 * 126.57038 * 0.03642 * 17 16 14 36 36 H 1.08996 * 109.47325 * 330.00153 * 19 18 17 37 37 H 1.09007 * 109.47090 * 209.99611 * 19 18 17 38 38 H 1.07998 * 120.41916 * 359.97438 * 21 20 19 39 39 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 40 40 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 41 41 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 42 42 H 1.08008 * 125.50327 * 179.71614 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8811 -1.3819 10 1 6.5988 1.5461 -0.1941 11 1 6.4969 -0.5177 -1.4632 12 1 6.3991 1.6167 -2.6101 13 7 1.6525 2.0973 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3416 2.6320 0.4319 16 6 0.0457 3.3233 2.6259 17 6 -1.1472 3.9340 2.8808 18 7 -1.0850 4.4038 4.1489 19 6 -2.1428 5.1330 4.8529 20 6 -3.0324 4.1542 5.5754 21 6 -3.2443 4.2977 6.9338 22 6 -4.0679 3.3946 7.5879 23 6 -4.6420 2.3705 6.8500 24 6 -4.3845 2.2909 5.4947 25 7 -3.5991 3.1708 4.9044 26 6 0.1366 4.0834 4.6494 27 7 0.8087 3.4340 3.7433 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8292 -0.0611 -2.9499 34 1 2.2720 2.1230 1.9979 35 1 -1.9817 4.0250 2.2012 36 1 -2.7345 5.6992 4.1336 37 1 -1.6948 5.8172 5.5736 38 1 -2.7767 5.1049 7.4780 39 1 -4.2546 3.4841 8.6480 40 1 -5.2861 1.6469 7.3276 41 1 -4.8311 1.4988 4.9122 42 1 0.4918 4.3259 5.6401 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198376678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:26 Heat of formation + Delta-G solvation = 59.914609 kcal Electronic energy + Delta-G solvation = -25131.515191 eV Core-core repulsion = 21498.683361 eV Total energy + Delta-G solvation = -3632.831831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03060 -40.51224 -38.41769 -34.95419 -34.74693 -32.86804 -32.19818 -31.60693 -30.68397 -29.39603 -27.45268 -26.62464 -24.02622 -23.47143 -22.76990 -22.26025 -20.87856 -19.81974 -19.00437 -17.97526 -17.40465 -16.57806 -16.37906 -16.22252 -15.28494 -15.25133 -15.01210 -14.60056 -14.22061 -14.04972 -13.83866 -13.74917 -13.43886 -13.34432 -12.87555 -12.73511 -12.52825 -12.26282 -11.76414 -11.33552 -11.12074 -10.83559 -10.71278 -10.37390 -10.18346 -10.09799 -10.01156 -9.96538 -9.59997 -9.51603 -9.46823 -8.95882 -8.86315 -8.35980 -8.33095 -7.55189 -5.98948 -4.06751 0.53541 0.80824 1.97495 2.63905 2.79760 3.33141 3.37913 3.40481 3.44891 3.70278 4.09333 4.32202 4.36946 4.40071 4.45882 4.53428 4.61255 4.67035 4.78857 4.83945 4.95256 5.06270 5.22112 5.32306 5.56858 5.64935 5.68145 5.92928 6.17504 6.20929 6.54878 6.63625 6.72292 6.83756 7.13423 7.22961 7.36794 7.53287 7.54713 7.67365 7.78998 7.89501 8.02915 8.13952 8.33663 8.92070 8.98870 9.39110 9.61328 11.06634 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.002734 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.270290 B =10238.361060 C =10747.777861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.884 5.884 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.692 5.692 14 C 0.586 3.414 15 O -0.556 6.556 16 C -0.052 4.052 17 C 0.044 3.956 18 N -0.455 5.455 19 C 0.160 3.840 20 C 0.099 3.901 21 C -0.158 4.158 22 C -0.075 4.075 23 C -0.168 4.168 24 C 0.106 3.894 25 N -0.463 5.463 26 C 0.172 3.828 27 N -0.458 5.458 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.396 0.604 35 H 0.184 0.816 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 9.102 21.869 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.339 5.339 14 C 0.370 3.630 15 O -0.436 6.436 16 C -0.181 4.181 17 C -0.093 4.093 18 N -0.138 5.138 19 C 0.037 3.963 20 C -0.040 4.040 21 C -0.179 4.179 22 C -0.101 4.101 23 C -0.188 4.188 24 C -0.051 4.051 25 N -0.172 5.172 26 C -0.111 4.111 27 N -0.176 5.176 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.201 0.799 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.686 8.630 20.212 27.001 hybrid contribution 0.189 0.253 1.326 1.363 sum -15.496 8.884 21.538 27.981 Atomic orbital electron populations 1.21835 0.98379 0.97860 1.01324 1.21925 0.92632 0.99854 1.02152 1.18797 0.94152 0.89185 0.81122 0.93297 1.21315 0.90862 1.38362 1.06086 0.91986 1.24879 0.98481 0.94970 0.95450 1.69915 1.34875 1.38064 1.09377 0.86417 0.85139 0.77652 0.78037 1.19715 1.20978 1.20987 1.46305 1.14392 1.54744 1.18441 1.16890 0.82905 0.78569 0.84596 1.90750 1.52084 1.61441 1.39282 1.21051 0.93186 1.08237 0.95605 1.22508 1.00421 1.00178 0.86180 1.45154 1.13402 1.43332 1.11920 1.20674 0.87236 0.91413 0.97006 1.21351 0.96411 0.94899 0.91333 1.21929 1.00261 1.00955 0.94717 1.21604 0.94516 0.93419 1.00566 1.22256 1.01266 0.99443 0.95807 1.22856 0.93417 0.96281 0.92535 1.67465 1.06928 1.02484 1.40330 1.25071 0.82659 1.02485 1.00857 1.70635 1.30769 1.16036 1.00205 0.96038 0.94166 0.93156 0.88352 0.95095 0.92780 0.77116 0.79900 0.87104 0.86956 0.84409 0.84507 0.84485 0.82316 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.51 37.16 0.32 -2.98 16 2 C -0.13 -3.32 5.45 -26.73 -0.15 -3.46 16 3 C 0.27 7.32 2.24 -69.08 -0.15 7.16 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.86 8.73 -34.44 -0.30 -15.17 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 7 C 0.06 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.76 11.29 55.43 0.63 -25.14 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.69 -16.62 5.02 -56.04 -0.28 -16.90 16 14 C 0.59 13.50 6.38 -12.56 -0.08 13.42 16 15 O -0.56 -14.08 14.01 5.25 0.07 -14.00 16 16 C -0.05 -0.99 6.98 -83.09 -0.58 -1.57 16 17 C 0.04 0.68 11.26 -16.64 -0.19 0.50 16 18 N -0.45 -5.24 2.66 -119.64 -0.32 -5.56 16 19 C 0.16 1.12 6.50 -5.19 -0.03 1.09 16 20 C 0.10 0.82 6.39 -82.58 -0.53 0.29 16 21 C -0.16 -0.92 9.71 -39.44 -0.38 -1.31 16 22 C -0.07 -0.41 10.18 -39.28 -0.40 -0.81 16 23 C -0.17 -1.06 10.11 -39.44 -0.40 -1.46 16 24 C 0.11 0.92 11.18 -17.55 -0.20 0.73 16 25 N -0.46 -4.99 10.22 -9.47 -0.10 -5.09 16 26 C 0.17 2.16 12.55 -89.91 -1.13 1.03 16 27 N -0.46 -7.92 11.01 -11.03 -0.12 -8.04 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.97 5.64 -51.93 -0.29 0.67 16 30 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 31 H 0.10 2.79 5.95 -51.93 -0.31 2.48 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.40 9.01 8.25 -40.82 -0.34 8.67 16 35 H 0.18 2.68 8.06 -52.49 -0.42 2.26 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.37 7.87 -51.92 -0.41 -0.04 16 38 H 0.14 0.39 7.95 -52.49 -0.42 -0.03 16 39 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -36.05 358.39 -9.52 -45.57 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.49 Total: 8.04 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.29 Total: -0.82 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.19 Total: -60.73 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.07 Total: -14.00 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.05 -9.52 -45.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198376678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.487 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds