Wall clock time and date at job start Tue Mar 31 2020 10:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 H 1.08999 * 109.47363 * 305.00489 * 3 2 1 5 5 C 1.50704 * 109.46893 * 185.00022 * 3 2 1 6 6 H 1.07999 * 119.99747 * 240.00241 * 5 3 2 7 7 C 1.37868 * 119.99954 * 60.00403 * 5 3 2 8 8 N 1.31511 * 120.00144 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46798 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47162 * 120.00021 * 9 7 5 12 12 H 1.48496 * 109.47725 * 240.00513 * 9 7 5 13 13 N 1.46500 * 109.46456 * 65.00625 * 3 2 1 14 14 C 1.34778 * 119.99964 * 274.98999 * 13 3 2 15 15 O 1.21627 * 119.99876 * 0.02562 * 14 13 3 16 16 C 1.47327 * 120.00233 * 180.02562 * 14 13 3 17 17 C 1.36418 * 126.23366 * 180.02562 * 16 14 13 18 18 N 1.35377 * 106.86967 * 180.02562 * 17 16 14 19 19 C 1.46501 * 126.13615 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46945 * 90.00197 * 19 18 17 21 21 C 1.38227 * 119.62024 * 124.97880 * 20 19 18 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 19 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 304.99632 * 20 19 18 26 26 C 1.35846 * 107.72943 * 0.25773 * 18 17 16 27 27 N 1.30176 * 109.00205 * 359.56190 * 26 18 17 28 28 H 1.08992 * 109.47525 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47162 * 299.99988 * 1 2 3 30 30 H 1.09004 * 109.47364 * 59.99328 * 1 2 3 31 31 H 1.09002 * 109.47071 * 240.00791 * 2 1 3 32 32 H 1.08997 * 109.47049 * 120.00447 * 2 1 3 33 33 H 0.97006 * 120.00585 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00815 * 95.00029 * 13 3 2 35 35 H 1.08000 * 126.57038 * 0.03642 * 17 16 14 36 36 H 1.08996 * 109.47325 * 330.00153 * 19 18 17 37 37 H 1.09007 * 109.47090 * 209.99611 * 19 18 17 38 38 H 1.07998 * 120.41916 * 359.97438 * 21 20 19 39 39 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 40 40 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 41 41 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 42 42 H 1.08008 * 125.50327 * 179.71614 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8811 -1.3819 10 1 6.5988 1.5461 -0.1941 11 1 6.4969 -0.5177 -1.4632 12 1 6.3991 1.6167 -2.6101 13 7 1.6525 2.0973 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3416 2.6320 0.4319 16 6 0.0457 3.3233 2.6259 17 6 -1.1472 3.9340 2.8808 18 7 -1.0850 4.4038 4.1489 19 6 -2.1428 5.1330 4.8529 20 6 -3.0324 4.1542 5.5754 21 6 -3.2443 4.2977 6.9338 22 6 -4.0679 3.3946 7.5879 23 6 -4.6420 2.3705 6.8500 24 6 -4.3845 2.2909 5.4947 25 7 -3.5991 3.1708 4.9044 26 6 0.1366 4.0834 4.6494 27 7 0.8087 3.4340 3.7433 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8292 -0.0611 -2.9499 34 1 2.2720 2.1230 1.9979 35 1 -1.9817 4.0250 2.2012 36 1 -2.7345 5.6992 4.1336 37 1 -1.6948 5.8172 5.5736 38 1 -2.7767 5.1049 7.4780 39 1 -4.2546 3.4841 8.6480 40 1 -5.2861 1.6469 7.3276 41 1 -4.8311 1.4988 4.9122 42 1 0.4918 4.3259 5.6401 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198376678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:26 Heat of formation + Delta-G solvation = 36.050392 kcal Electronic energy + Delta-G solvation = -25132.550022 eV Core-core repulsion = 21498.683361 eV Total energy + Delta-G solvation = -3633.866661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.11341 -41.06373 -40.25451 -36.87717 -35.69609 -34.22875 -33.35870 -32.84947 -32.21198 -30.65904 -29.03033 -27.85032 -25.30603 -24.52195 -24.01818 -23.36892 -21.91305 -21.59922 -20.85436 -19.28244 -18.22210 -17.87851 -17.21269 -17.05092 -16.86903 -16.77698 -16.25589 -16.11038 -15.63541 -15.19458 -14.88642 -14.68238 -14.59761 -14.49018 -14.20580 -13.99668 -13.70852 -13.42987 -13.31459 -13.17458 -12.86813 -12.70046 -12.67498 -12.15370 -12.05924 -11.60147 -11.28974 -11.02875 -10.87888 -10.81676 -10.78001 -10.52261 -10.34028 -10.03019 -9.71745 -9.41083 -8.14911 -6.32062 0.04695 0.34976 0.71901 1.44277 1.44431 1.57152 1.58049 1.78317 2.39436 2.73932 2.78716 2.86410 3.13796 3.22351 3.59041 3.65779 3.94087 3.96659 4.08849 4.21265 4.25258 4.32285 4.41415 4.48725 4.56586 4.58963 4.65440 4.76657 4.81010 5.05985 5.06918 5.19273 5.24706 5.26164 5.44687 5.48357 5.56928 5.65670 5.74861 5.80321 5.94011 6.17253 6.21095 6.74959 6.83555 7.01712 7.14233 7.34221 7.61430 8.91134 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.002734 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.270290 B =10238.361060 C =10747.777861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.280 1.280 13 N -0.695 5.695 14 C 0.582 3.418 15 O -0.591 6.591 16 C -0.095 4.095 17 C 0.059 3.941 18 N -0.441 5.441 19 C 0.154 3.846 20 C 0.076 3.924 21 C -0.147 4.147 22 C -0.078 4.078 23 C -0.166 4.166 24 C 0.075 3.925 25 N -0.510 5.510 26 C 0.198 3.802 27 N -0.500 5.500 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.183 0.817 36 H 0.118 0.882 37 H 0.162 0.838 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 10.557 25.720 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.206 1.206 13 N -0.342 5.342 14 C 0.370 3.630 15 O -0.473 6.473 16 C -0.223 4.223 17 C -0.081 4.081 18 N -0.122 5.122 19 C 0.033 3.967 20 C -0.062 4.062 21 C -0.167 4.167 22 C -0.104 4.104 23 C -0.186 4.186 24 C -0.081 4.081 25 N -0.220 5.220 26 C -0.086 4.086 27 N -0.219 5.219 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.235 0.765 35 H 0.200 0.800 36 H 0.136 0.864 37 H 0.180 0.820 38 H 0.194 0.806 39 H 0.186 0.814 40 H 0.176 0.824 41 H 0.174 0.826 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -15.526 10.105 24.107 30.402 hybrid contribution -0.020 -0.125 0.258 0.288 sum -15.546 9.980 24.365 30.576 Atomic orbital electron populations 1.21655 0.96957 0.99109 1.00148 1.21772 0.93807 0.99084 1.01123 1.18431 0.93810 0.89216 0.81093 0.98136 1.21573 0.91359 1.39007 1.06711 0.91706 1.25784 1.03591 0.94228 0.94831 1.70052 1.37025 1.38356 1.09842 0.85282 0.78808 0.77973 0.78173 1.18811 1.20096 1.20597 1.46119 1.15242 1.55317 1.17474 1.17462 0.81907 0.77805 0.85874 1.90706 1.52798 1.62718 1.41091 1.20487 0.95349 1.11319 0.95116 1.22433 0.98906 0.98881 0.87905 1.45359 1.14261 1.42209 1.10407 1.21207 0.86319 0.91271 0.97864 1.21608 0.97101 0.94898 0.92618 1.22324 0.99340 1.01437 0.93635 1.22070 0.93681 0.92617 1.02047 1.22521 1.01076 1.00145 0.94872 1.23007 0.94401 0.96727 0.93988 1.67372 1.08383 1.04029 1.42190 1.25998 0.81981 0.99274 1.01353 1.70529 1.32251 1.18564 1.00550 0.93397 0.94496 0.95116 0.90524 0.94634 0.92478 0.76467 0.79980 0.86422 0.82023 0.80648 0.81390 0.82420 0.82624 0.72841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.51 71.98 0.61 -5.48 16 2 C -0.12 -6.48 5.45 30.60 0.17 -6.31 16 3 C 0.28 15.89 2.24 44.25 0.10 15.99 16 4 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -31.81 8.73 25.60 0.22 -31.59 16 6 H 0.06 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -54.81 11.29 21.44 0.24 -54.57 16 9 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 N -0.69 -35.00 5.02 -449.44 -2.26 -37.25 16 14 C 0.58 28.24 6.38 86.63 0.55 28.80 16 15 O -0.59 -31.87 14.01 -4.12 -0.06 -31.93 16 16 C -0.10 -3.72 6.98 40.51 0.28 -3.44 16 17 C 0.06 1.83 11.26 83.72 0.94 2.77 16 18 N -0.44 -9.11 2.66 -532.44 -1.42 -10.53 16 19 C 0.15 1.60 6.50 85.64 0.56 2.16 16 20 C 0.08 1.05 6.39 42.55 0.27 1.32 16 21 C -0.15 -1.08 9.71 22.36 0.22 -0.86 16 22 C -0.08 -0.56 10.18 22.47 0.23 -0.34 16 23 C -0.17 -1.77 10.11 22.36 0.23 -1.55 16 24 C 0.08 1.30 11.18 84.67 0.95 2.24 16 25 N -0.51 -10.69 10.22 -183.88 -1.88 -12.56 16 26 C 0.20 4.34 12.55 180.10 2.26 6.60 16 27 N -0.50 -16.91 11.01 -188.81 -2.08 -18.99 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.85 5.64 -2.39 -0.01 1.83 16 30 H 0.03 1.61 7.84 -2.38 -0.02 1.60 16 31 H 0.08 4.52 5.95 -2.39 -0.01 4.51 16 32 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 34 H 0.40 19.02 8.25 -92.71 -0.77 18.26 16 35 H 0.18 5.53 8.06 -2.91 -0.02 5.50 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.16 0.08 7.87 -2.38 -0.02 0.06 16 38 H 0.18 -0.13 7.95 -2.91 -0.02 -0.16 16 39 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.26 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -84.48 358.39 2.90 -81.59 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.28 Total: 25.94 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 8.04 Total: 11.66 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -7.39 Total: -133.90 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.06 Total: -31.93 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -84.48 2.90 -81.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198376678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.636 kcal (2) G-P(sol) polarization free energy of solvation -84.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds