Wall clock time and date at job start Tue Mar 31 2020 10:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21604 * 119.99560 * 0.02562 * 14 13 3 16 16 C 1.47404 * 120.00576 * 180.02562 * 14 13 3 17 17 N 1.31614 * 125.86509 * 0.02562 * 16 14 13 18 18 C 1.33092 * 109.09921 * 179.97438 * 17 16 14 19 19 C 1.35567 * 108.35115 * 0.02562 * 18 17 16 20 20 N 1.35405 * 107.15707 * 359.77176 * 19 18 17 21 21 C 1.46493 * 126.43887 * 180.24502 * 20 19 18 22 22 C 1.50705 * 109.47023 * 265.14216 * 21 20 19 23 23 C 1.38667 * 120.42082 * 89.99906 * 22 21 20 24 24 C 1.38624 * 118.41946 * 180.02562 * 23 22 21 25 25 C 1.38222 * 119.16638 * 0.02562 * 24 23 22 26 26 N 1.31862 * 120.76038 * 359.97438 * 25 24 23 27 27 C 1.31892 * 121.72477 * 359.70651 * 26 25 24 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 35 35 H 1.08008 * 125.82789 * 180.02562 * 18 17 16 36 36 H 1.07999 * 126.42166 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.47197 * 25.13716 * 21 20 19 38 38 H 1.08999 * 109.47434 * 145.13700 * 21 20 19 39 39 H 1.08004 * 120.78975 * 359.97438 * 23 22 21 40 40 H 1.08006 * 120.41606 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.62393 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.61507 * 180.30930 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0453 3.3240 2.6262 17 7 0.7911 3.4269 3.7057 18 6 0.1124 4.0847 4.6428 19 6 -1.1042 4.4089 4.1403 20 7 -1.1509 3.9378 2.8717 21 6 -2.2734 4.0609 1.9385 22 6 -3.1240 2.8189 2.0092 23 6 -4.1812 2.7419 2.9033 24 6 -4.9361 1.5797 2.9338 25 6 -4.6120 0.5433 2.0786 26 7 -3.5993 0.6516 1.2411 27 6 -2.8634 1.7445 1.1803 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9977 35 1 0.4699 4.3202 5.6344 36 1 -1.8877 4.9462 4.6539 37 1 -2.8753 4.9293 2.2067 38 1 -1.8915 4.1826 0.9248 39 1 -4.4104 3.5675 3.5608 40 1 -5.7670 1.4852 3.6173 41 1 -5.1949 -0.3657 2.0965 42 1 -2.0449 1.7983 0.4779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199404210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:42 Heat of formation + Delta-G solvation = 43.767422 kcal Electronic energy + Delta-G solvation = -26503.821009 eV Core-core repulsion = 22870.288984 eV Total energy + Delta-G solvation = -3633.532025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.27397 -41.03478 -40.38903 -37.04560 -36.00867 -34.30733 -33.29909 -32.85677 -32.27136 -30.65736 -28.88243 -27.75329 -25.36186 -24.59160 -24.22102 -23.24125 -22.29588 -21.53578 -20.98080 -19.25521 -18.12599 -18.08327 -17.37070 -17.27986 -17.08512 -16.90108 -16.33522 -16.11925 -15.31782 -15.03288 -14.94817 -14.82695 -14.57925 -14.27439 -14.25485 -13.99591 -13.79419 -13.51108 -13.42758 -13.17684 -12.91633 -12.69405 -12.64720 -12.17886 -12.04014 -11.60554 -11.24720 -11.08109 -11.03734 -10.88033 -10.78763 -10.53395 -10.31735 -10.06555 -9.77053 -9.38460 -8.16340 -6.33248 -0.00751 0.32590 0.45604 1.44649 1.46775 1.54089 1.62369 1.74550 2.37479 2.50730 2.59850 2.91930 3.12974 3.46627 3.51904 3.62601 3.81465 3.94849 4.01761 4.06718 4.27537 4.44449 4.46928 4.48492 4.55434 4.56303 4.69924 4.74729 4.90184 5.05249 5.12146 5.13356 5.26568 5.32374 5.40819 5.52775 5.59459 5.69747 5.77188 5.79915 5.88743 5.96180 6.14598 6.71728 6.74340 7.03914 7.05353 7.29639 7.45207 8.88757 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.004200 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.891395 B = 6665.063827 C = 7906.730008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C 0.284 3.716 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.683 5.683 14 C 0.588 3.412 15 O -0.565 6.565 16 C 0.110 3.890 17 N -0.473 5.473 18 C -0.051 4.051 19 C -0.005 4.005 20 N -0.408 5.408 21 C 0.147 3.853 22 C -0.175 4.175 23 C -0.051 4.051 24 C -0.172 4.172 25 C 0.086 3.914 26 N -0.525 5.525 27 C 0.090 3.910 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.204 0.796 36 H 0.236 0.764 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.267 8.595 15.318 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.159 4.159 3 C 0.181 3.819 4 H 0.029 0.971 5 C -0.591 4.591 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.330 5.330 14 C 0.373 3.627 15 O -0.447 6.447 16 C -0.148 4.148 17 N -0.195 5.195 18 C -0.204 4.204 19 C -0.143 4.143 20 N -0.088 5.088 21 C 0.026 3.974 22 C -0.178 4.178 23 C -0.077 4.077 24 C -0.191 4.191 25 C -0.071 4.071 26 N -0.234 5.234 27 C -0.066 4.066 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.221 0.779 36 H 0.252 0.748 37 H 0.169 0.831 38 H 0.114 0.886 39 H 0.195 0.805 40 H 0.193 0.807 41 H 0.192 0.808 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.882 7.435 13.775 23.022 hybrid contribution 0.534 0.562 0.132 0.786 sum -16.348 7.997 13.907 22.904 Atomic orbital electron populations 1.21627 0.96479 0.98865 1.00168 1.21801 0.93960 0.99059 1.01096 1.18457 0.93772 0.89081 0.80553 0.97084 1.21509 0.91415 1.39397 1.06797 0.91636 1.25698 1.03229 0.94171 0.94860 1.70023 1.37051 1.38066 1.09739 0.85452 0.79187 0.78468 0.77567 1.19247 1.20788 1.19669 1.46078 1.14635 1.54366 1.17968 1.16837 0.82681 0.78444 0.84704 1.90559 1.51622 1.62096 1.40376 1.22513 0.86758 1.08501 0.96994 1.70171 1.31883 1.17307 1.00129 1.23058 0.92783 1.03680 1.00866 1.23709 1.02307 1.04087 0.84226 1.45394 1.12062 1.38568 1.12752 1.21003 0.85104 0.96943 0.94347 1.20979 0.99353 0.97348 1.00131 1.21948 0.91646 0.99116 0.94987 1.22531 1.02126 0.93703 1.00782 1.23466 0.92833 1.00055 0.90764 1.67805 1.06825 1.25929 1.22829 1.23638 0.96910 0.88499 0.97522 0.94516 0.94756 0.94141 0.94931 0.90519 0.92466 0.76193 0.77943 0.74818 0.83107 0.88645 0.80536 0.80737 0.80755 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.41 8.20 71.98 0.59 -4.82 16 2 C -0.12 -6.22 5.45 30.60 0.17 -6.05 16 3 C 0.28 15.11 2.24 44.25 0.10 15.21 16 4 H 0.01 0.69 7.58 -2.39 -0.02 0.67 16 5 C -0.55 -30.57 8.73 25.60 0.22 -30.35 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.16 5.29 84.66 0.45 1.60 16 8 N -0.91 -52.65 11.29 21.45 0.24 -52.41 16 9 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 N -0.68 -31.49 5.02 -449.40 -2.25 -33.75 16 14 C 0.59 25.02 6.38 86.66 0.55 25.57 16 15 O -0.57 -25.23 8.66 -4.04 -0.04 -25.27 16 16 C 0.11 3.87 7.78 136.28 1.06 4.93 16 17 N -0.47 -15.79 10.89 -189.53 -2.06 -17.86 16 18 C -0.05 -1.17 11.85 83.88 0.99 -0.18 16 19 C -0.01 -0.09 11.53 83.52 0.96 0.87 16 20 N -0.41 -10.27 2.74 -520.50 -1.43 -11.69 16 21 C 0.15 3.14 5.73 85.64 0.49 3.63 16 22 C -0.18 -4.18 5.48 -19.77 -0.11 -4.29 16 23 C -0.05 -0.79 9.86 22.46 0.22 -0.57 16 24 C -0.17 -2.68 10.11 22.36 0.23 -2.45 16 25 C 0.09 1.93 11.18 84.68 0.95 2.88 16 26 N -0.52 -17.03 10.36 -195.84 -2.03 -19.06 16 27 C 0.09 2.99 10.31 84.67 0.87 3.87 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.69 7.84 -2.39 -0.02 1.68 16 30 H 0.04 1.88 4.89 -2.38 -0.01 1.87 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 4.36 5.95 -2.39 -0.01 4.34 16 33 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.40 17.78 8.22 -92.71 -0.76 17.02 16 35 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.24 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.15 1.59 8.09 -2.38 -0.02 1.58 16 38 H 0.10 2.61 6.59 -2.39 -0.02 2.59 16 39 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.16 6.25 3.86 -2.91 -0.01 6.24 16 Total: -1.00 -75.02 345.59 2.51 -72.51 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.30 Total: 32.28 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 7.75 Total: 9.87 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -7.53 Total: -134.76 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.04 Total: -25.27 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -75.02 2.51 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199404210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.282 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds