Wall clock time and date at job start Tue Mar 31 2020 10:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21624 * 119.99484 * 359.97438 * 14 13 3 16 16 C 1.47326 * 120.00484 * 180.02562 * 14 13 3 17 17 C 1.36418 * 126.23403 * 179.97438 * 16 14 13 18 18 N 1.35378 * 106.86985 * 179.97438 * 17 16 14 19 19 C 1.46505 * 126.13612 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.46621 * 90.00657 * 19 18 17 21 21 C 1.38650 * 120.78973 * 269.71874 * 20 19 18 22 22 C 1.38200 * 119.16318 * 179.80349 * 21 20 19 23 23 N 1.31871 * 120.76700 * 0.48190 * 22 21 20 24 24 C 1.31873 * 121.72335 * 359.74614 * 23 22 21 25 25 C 1.38207 * 120.76199 * 0.02562 * 24 23 22 26 26 C 1.35851 * 107.73092 * 0.02562 * 18 17 16 27 27 N 1.30181 * 109.00016 * 359.75970 * 26 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 35 35 H 1.08002 * 126.56729 * 359.97166 * 17 16 14 36 36 H 1.09001 * 109.46953 * 210.00005 * 19 18 17 37 37 H 1.08999 * 109.47061 * 330.00512 * 19 18 17 38 38 H 1.08004 * 120.41911 * 0.02562 * 21 20 19 39 39 H 1.08008 * 119.62166 * 180.20289 * 22 21 20 40 40 H 1.07998 * 119.61581 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.41658 * 180.02562 * 25 24 23 42 42 H 1.08001 * 125.50358 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3414 2.6326 0.4314 16 6 0.0455 3.3236 2.6255 17 6 -1.1472 3.9350 2.8800 18 7 -1.0856 4.4038 4.1485 19 6 -2.1434 5.1332 4.8523 20 6 -3.0341 4.1546 5.5734 21 6 -4.1519 3.6204 4.9508 22 6 -4.9431 2.7226 5.6420 23 7 -4.6506 2.3807 6.8816 24 6 -3.5984 2.8721 7.5065 25 6 -2.7587 3.7715 6.8771 26 6 0.1335 4.0774 4.6515 27 7 0.8062 3.4291 3.7450 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9977 35 1 -1.9809 4.0275 2.1997 36 1 -1.6953 5.8165 5.5738 37 1 -2.7340 5.7004 4.1330 38 1 -4.3991 3.8997 3.9372 39 1 -5.8138 2.2994 5.1631 40 1 -3.3909 2.5688 8.5220 41 1 -1.8982 4.1701 7.3940 42 1 0.4861 4.3141 5.6445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199423960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:32 Heat of formation + Delta-G solvation = 58.310051 kcal Electronic energy + Delta-G solvation = -25099.147967 eV Core-core repulsion = 21466.246557 eV Total energy + Delta-G solvation = -3632.901409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19575 -40.51540 -38.53621 -35.47189 -34.88581 -32.49401 -32.04330 -31.69967 -30.78154 -29.57043 -27.61072 -26.70996 -24.03780 -23.51697 -22.81593 -22.35123 -21.04638 -19.93260 -19.10586 -18.08917 -17.25674 -16.83052 -16.46625 -16.19107 -15.40383 -15.31449 -15.10667 -14.55025 -14.32022 -14.18639 -14.15471 -13.94905 -13.66135 -13.18581 -13.06335 -12.86966 -12.57695 -12.02242 -11.86468 -11.39544 -11.16079 -10.91063 -10.73975 -10.44697 -10.24904 -10.12423 -10.06811 -10.02909 -9.72361 -9.62216 -9.53507 -9.06957 -8.93923 -8.51479 -8.40100 -7.64341 -6.03273 -4.11529 0.59056 0.66609 1.79101 2.55834 2.66339 3.32691 3.36895 3.39120 3.39677 3.91964 3.96579 4.03457 4.23184 4.25066 4.44547 4.50540 4.54978 4.65394 4.69908 4.73385 4.81412 5.11893 5.27908 5.29154 5.41851 5.45144 5.64764 5.81135 6.02810 6.19718 6.48675 6.55392 6.56620 6.76331 6.97527 7.16158 7.29615 7.47654 7.50963 7.58805 7.72225 7.80442 7.93697 8.04743 8.28064 8.84991 8.90366 9.29299 9.55816 11.02246 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.002720 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.545554 B =10290.034380 C =10738.493948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.690 5.690 14 C 0.584 3.416 15 O -0.556 6.556 16 C -0.042 4.042 17 C 0.020 3.980 18 N -0.459 5.459 19 C 0.147 3.853 20 C -0.072 4.072 21 C -0.151 4.151 22 C 0.101 3.899 23 N -0.480 5.480 24 C 0.099 3.901 25 C -0.153 4.153 26 C 0.179 3.821 27 N -0.457 5.457 28 H 0.021 0.979 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.396 0.604 35 H 0.185 0.815 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 10.156 18.870 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.337 5.337 14 C 0.368 3.632 15 O -0.435 6.435 16 C -0.171 4.171 17 C -0.116 4.116 18 N -0.143 5.143 19 C 0.024 3.976 20 C -0.081 4.081 21 C -0.171 4.171 22 C -0.055 4.055 23 N -0.189 5.189 24 C -0.058 4.058 25 C -0.173 4.173 26 C -0.104 4.104 27 N -0.176 5.176 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.229 0.771 35 H 0.202 0.798 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.672 9.161 18.539 25.355 hybrid contribution 1.017 0.890 -0.128 1.357 sum -13.655 10.051 18.410 25.029 Atomic orbital electron populations 1.21835 0.98419 0.97923 1.01218 1.21931 0.92596 0.99835 1.02248 1.18800 0.94188 0.89180 0.81003 0.93275 1.21232 0.90797 1.38732 1.06195 0.92069 1.24878 0.98530 0.94884 0.95400 1.69892 1.35116 1.37835 1.09345 0.86518 0.85012 0.78275 0.77346 1.20168 1.21207 1.20218 1.46325 1.14301 1.54504 1.18527 1.16893 0.83029 0.78695 0.84567 1.90753 1.52121 1.61463 1.39193 1.21117 0.92993 1.07435 0.95557 1.22537 1.01113 1.01472 0.86479 1.45343 1.13806 1.43371 1.11752 1.20745 0.87852 0.91950 0.97015 1.20400 0.95454 0.97659 0.94607 1.22134 0.95429 0.98161 1.01413 1.22844 0.98726 0.93713 0.90257 1.67706 1.17653 1.23511 1.09992 1.22826 0.90010 0.92839 1.00078 1.22077 1.01050 0.99203 0.95017 1.25136 0.82557 1.01857 1.00843 1.70676 1.30626 1.16188 1.00120 0.95960 0.93138 0.94291 0.95037 0.88282 0.92612 0.77052 0.79838 0.87263 0.87471 0.84380 0.82320 0.82411 0.84462 0.77711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.25 5.45 -26.73 -0.15 -3.40 16 3 C 0.27 7.16 2.24 -69.08 -0.15 7.01 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.69 8.73 -34.44 -0.30 -14.99 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.38 11.29 55.43 0.63 -24.76 16 9 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.69 -16.00 5.02 -56.04 -0.28 -16.28 16 14 C 0.58 12.83 6.38 -12.56 -0.08 12.75 16 15 O -0.56 -13.44 14.02 5.26 0.07 -13.37 16 16 C -0.04 -0.74 6.98 -83.09 -0.58 -1.32 16 17 C 0.02 0.28 11.26 -16.64 -0.19 0.09 16 18 N -0.46 -4.53 2.71 -119.65 -0.32 -4.85 16 19 C 0.15 0.80 6.29 -5.19 -0.03 0.77 16 20 C -0.07 -0.48 5.50 -104.32 -0.57 -1.06 16 21 C -0.15 -1.08 9.82 -39.44 -0.39 -1.47 16 22 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 23 N -0.48 -4.59 10.36 -13.25 -0.14 -4.73 16 24 C 0.10 0.75 11.18 -17.55 -0.20 0.55 16 25 C -0.15 -0.96 9.82 -39.44 -0.39 -1.35 16 26 C 0.18 2.00 12.55 -89.90 -1.13 0.88 16 27 N -0.46 -7.37 11.01 -11.03 -0.12 -7.50 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 30 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.40 8.70 8.25 -40.82 -0.34 8.36 16 35 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.11 0.31 8.10 -51.93 -0.42 -0.11 16 37 H 0.11 0.43 8.10 -51.93 -0.42 0.00 16 38 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 40 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.21 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -35.16 358.60 -9.41 -44.57 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.50 Total: 7.34 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -4.13 Total: -2.08 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.24 Total: -58.11 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.16 -9.41 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199423960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.882 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds