Wall clock time and date at job start Tue Mar 31 2020 10:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 H 1.09000 * 109.47224 * 305.69398 * 3 2 1 5 5 C 1.50702 * 109.46606 * 185.69435 * 3 2 1 6 6 H 1.08005 * 119.99860 * 275.00385 * 5 3 2 7 7 C 1.37870 * 120.00015 * 95.00688 * 5 3 2 8 8 N 1.31521 * 119.99871 * 184.82384 * 7 5 3 9 9 Si 1.86796 * 120.00169 * 4.82548 * 7 5 3 10 10 H 1.48503 * 109.47376 * 84.86404 * 9 7 5 11 11 H 1.48501 * 109.47308 * 204.86115 * 9 7 5 12 12 H 1.48500 * 109.47317 * 324.86223 * 9 7 5 13 13 N 1.46499 * 109.47269 * 65.69279 * 3 2 1 14 14 C 1.34769 * 120.00344 * 275.00138 * 13 3 2 15 15 O 1.21607 * 119.99635 * 359.97438 * 14 13 3 16 16 C 1.47423 * 120.00655 * 180.02562 * 14 13 3 17 17 C 1.41292 * 126.41053 * 359.96736 * 16 14 13 18 18 N 1.30450 * 108.02536 * 180.02562 * 17 16 14 19 19 N 1.39940 * 108.89494 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.75331 * 180.02562 * 19 18 17 21 21 C 1.50704 * 109.46839 * 305.02264 * 20 19 18 22 22 C 1.38218 * 119.61428 * 125.00333 * 21 20 19 23 23 C 1.38638 * 119.15639 * 179.97438 * 22 21 20 24 24 C 1.38665 * 118.42110 * 0.02562 * 23 22 21 25 25 C 1.38181 * 119.16667 * 359.93371 * 24 23 22 26 26 N 1.31855 * 119.61463 * 304.97912 * 21 20 19 27 27 C 1.34260 * 108.48864 * 0.26320 * 19 18 17 28 28 H 1.09002 * 109.47156 * 299.99562 * 1 2 3 29 29 H 1.08998 * 109.47383 * 59.99798 * 1 2 3 30 30 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46528 * 240.00073 * 2 1 3 32 32 H 1.08992 * 109.46961 * 120.00145 * 2 1 3 33 33 H 0.96999 * 119.99755 * 179.97438 * 8 7 5 34 34 H 0.96999 * 119.99768 * 94.99297 * 13 3 2 35 35 H 1.08006 * 125.99334 * 0.06303 * 17 16 14 36 36 H 1.09002 * 109.46850 * 185.02863 * 20 19 18 37 37 H 1.08997 * 109.46942 * 65.02337 * 20 19 18 38 38 H 1.07996 * 120.42433 * 359.71886 * 22 21 20 39 39 H 1.08008 * 120.78599 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.41433 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.61866 * 180.02562 * 25 24 23 42 42 H 1.08003 * 126.28576 * 179.73753 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5893 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3740 -2.9864 11 1 3.7401 1.4497 -4.1028 12 1 1.7561 1.1882 -2.7332 13 7 1.6667 2.0925 1.2588 14 6 0.4509 2.6588 1.3901 15 8 -0.3362 2.6307 0.4636 16 6 0.0754 3.3133 2.6566 17 6 0.8789 3.4249 3.8134 18 7 0.1954 4.0684 4.7192 19 7 -1.0599 4.3940 4.1932 20 6 -2.1210 5.1189 4.8968 21 6 -2.4355 4.4161 6.1923 22 6 -2.3789 5.1183 7.3815 23 6 -2.6706 4.4625 8.5676 24 6 -3.0093 3.1190 8.5129 25 6 -3.0460 2.4831 7.2867 26 7 -2.7620 3.1387 6.1780 27 6 -1.1297 3.9255 2.9369 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8251 1.5978 -2.3974 34 1 2.2946 2.1151 1.9977 35 1 1.8833 3.0446 3.9277 36 1 -3.0148 5.1494 4.2737 37 1 -1.7890 6.1357 5.1063 38 1 -2.1069 6.1634 7.3871 39 1 -2.6349 4.9858 9.5118 40 1 -3.2422 2.5766 9.4174 41 1 -3.3093 1.4369 7.2356 42 1 -1.9726 4.0142 2.2676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199579986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:54 Heat of formation + Delta-G solvation = 73.750419 kcal Electronic energy + Delta-G solvation = -25073.697216 eV Core-core repulsion = 21441.465351 eV Total energy + Delta-G solvation = -3632.231865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.29132 -40.38501 -38.58228 -35.01270 -34.48469 -32.78229 -32.27412 -31.61059 -31.09067 -29.83461 -27.66650 -26.81631 -23.94230 -23.18373 -22.76870 -22.26154 -20.72770 -19.93173 -19.32274 -18.01101 -17.31250 -16.73005 -16.49194 -16.01892 -15.60189 -15.28780 -15.05142 -14.49216 -14.30956 -14.20628 -13.92741 -13.61300 -13.32821 -13.28327 -12.76481 -12.66305 -12.54610 -12.22217 -12.04558 -11.80529 -11.71136 -10.93195 -10.83232 -10.58728 -10.55483 -10.28450 -9.89799 -9.86360 -9.76902 -9.54199 -9.41415 -9.13126 -9.00064 -8.62818 -8.46967 -7.81788 -6.16884 -4.19736 0.61037 0.88476 1.77976 2.36495 2.48231 3.32578 3.39780 3.40051 3.48195 3.73125 4.14472 4.20996 4.23403 4.39349 4.44459 4.54445 4.65670 4.72440 4.84980 4.93659 5.05465 5.12247 5.22743 5.28998 5.55364 5.60536 5.68486 5.74800 6.05686 6.16837 6.19776 6.24744 6.37111 6.57942 6.77734 6.88227 6.89160 7.09343 7.13303 7.40028 7.47547 7.58899 7.67525 7.70021 8.25829 8.72487 8.85385 9.18475 9.46429 10.94935 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.002728 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.210980 B =10261.050512 C =10405.329231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.239 3.761 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.258 1.258 13 N -0.699 5.699 14 C 0.580 3.420 15 O -0.564 6.564 16 C -0.278 4.278 17 C 0.082 3.918 18 N -0.298 5.298 19 N -0.359 5.359 20 C 0.187 3.813 21 C 0.112 3.888 22 C -0.152 4.152 23 C -0.075 4.075 24 C -0.169 4.169 25 C 0.104 3.896 26 N -0.465 5.465 27 C 0.125 3.875 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.391 0.609 35 H 0.189 0.811 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.626 7.179 19.675 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.136 3.864 4 H 0.069 0.931 5 C -0.566 4.566 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.183 1.183 13 N -0.346 5.346 14 C 0.366 3.634 15 O -0.445 6.445 16 C -0.293 4.293 17 C -0.106 4.106 18 N -0.118 5.118 19 N -0.138 5.138 20 C 0.065 3.935 21 C -0.026 4.026 22 C -0.173 4.173 23 C -0.101 4.101 24 C -0.189 4.189 25 C -0.054 4.054 26 N -0.174 5.174 27 C -0.024 4.024 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.206 0.794 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.120 7.255 19.310 27.456 hybrid contribution -0.043 0.233 -0.341 0.415 sum -18.163 7.488 18.969 27.309 Atomic orbital electron populations 1.21902 0.97412 0.98687 1.02159 1.22066 0.93715 0.99506 1.01091 1.19142 0.95346 0.89044 0.82862 0.93136 1.21032 0.88783 1.51388 0.95414 0.90361 1.24934 0.94853 0.93752 0.98800 1.69891 1.09769 1.48670 1.24402 0.86906 0.81334 0.79631 0.82161 1.19903 1.21360 1.18254 1.46365 1.14235 1.56010 1.18025 1.17269 0.82527 0.78124 0.85487 1.90713 1.51286 1.61449 1.41056 1.20562 0.96284 1.14525 0.97952 1.24104 0.99787 0.96296 0.90388 1.77104 0.91287 1.20846 1.22558 1.48141 1.11887 1.43679 1.10102 1.20540 0.88745 0.93944 0.90293 1.21099 0.96287 0.90806 0.94456 1.21911 1.01047 1.01631 0.92689 1.21585 0.95414 0.94575 0.98547 1.22211 1.01237 0.95718 0.99716 1.22784 0.94902 1.00146 0.87553 1.67432 1.09723 1.08303 1.31940 1.22880 0.99069 0.94084 0.86411 0.92949 0.93159 0.95297 0.92228 0.93060 0.92337 0.77585 0.79432 0.86675 0.87777 0.84486 0.84562 0.84604 0.82557 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.53 37.16 0.32 -2.67 16 2 C -0.12 -2.78 5.59 -26.73 -0.15 -2.93 16 3 C 0.24 5.75 1.89 -69.08 -0.13 5.62 16 4 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 5 C -0.53 -14.32 9.05 -34.44 -0.31 -14.63 16 6 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 9 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.36 6.82 56.52 0.39 -5.98 16 13 N -0.70 -14.53 5.02 -56.01 -0.28 -14.81 16 14 C 0.58 11.68 6.41 -12.52 -0.08 11.60 16 15 O -0.56 -12.88 14.04 5.27 0.07 -12.81 16 16 C -0.28 -4.62 6.13 -105.07 -0.64 -5.26 16 17 C 0.08 1.23 11.50 -16.98 -0.20 1.03 16 18 N -0.30 -4.39 12.32 30.86 0.38 -4.01 16 19 N -0.36 -4.54 3.59 -61.98 -0.22 -4.77 16 20 C 0.19 1.60 6.87 -5.19 -0.04 1.56 16 21 C 0.11 1.08 6.23 -82.59 -0.51 0.56 16 22 C -0.15 -1.13 9.71 -39.44 -0.38 -1.51 16 23 C -0.08 -0.49 10.18 -39.28 -0.40 -0.89 16 24 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 25 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 26 N -0.46 -5.31 10.22 -9.47 -0.10 -5.40 16 27 C 0.13 1.76 11.25 -16.56 -0.19 1.58 16 28 H 0.05 1.10 5.63 -51.93 -0.29 0.80 16 29 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.39 7.23 7.55 -40.82 -0.31 6.93 16 35 H 0.19 2.38 7.50 -52.48 -0.39 1.98 16 36 H 0.12 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.10 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.14 0.67 7.95 -52.49 -0.42 0.25 16 39 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.18 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -35.54 357.47 -7.41 -42.95 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.43 Total: 6.46 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.41 Total: -4.57 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.55 Total: -54.69 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.54 -7.41 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199579986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.702 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds