Wall clock time and date at job start Tue Mar 31 2020 10:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 H 1.09000 * 109.47224 * 305.69398 * 3 2 1 5 5 C 1.50702 * 109.46606 * 185.69435 * 3 2 1 6 6 H 1.08005 * 119.99860 * 275.00385 * 5 3 2 7 7 C 1.37870 * 120.00015 * 95.00688 * 5 3 2 8 8 N 1.31521 * 119.99871 * 184.82384 * 7 5 3 9 9 Si 1.86796 * 120.00169 * 4.82548 * 7 5 3 10 10 H 1.48503 * 109.47376 * 84.86404 * 9 7 5 11 11 H 1.48501 * 109.47308 * 204.86115 * 9 7 5 12 12 H 1.48500 * 109.47317 * 324.86223 * 9 7 5 13 13 N 1.46499 * 109.47269 * 65.69279 * 3 2 1 14 14 C 1.34769 * 120.00344 * 275.00138 * 13 3 2 15 15 O 1.21607 * 119.99635 * 359.97438 * 14 13 3 16 16 C 1.47423 * 120.00655 * 180.02562 * 14 13 3 17 17 C 1.41292 * 126.41053 * 359.96736 * 16 14 13 18 18 N 1.30450 * 108.02536 * 180.02562 * 17 16 14 19 19 N 1.39940 * 108.89494 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.75331 * 180.02562 * 19 18 17 21 21 C 1.50704 * 109.46839 * 305.02264 * 20 19 18 22 22 C 1.38218 * 119.61428 * 125.00333 * 21 20 19 23 23 C 1.38638 * 119.15639 * 179.97438 * 22 21 20 24 24 C 1.38665 * 118.42110 * 0.02562 * 23 22 21 25 25 C 1.38181 * 119.16667 * 359.93371 * 24 23 22 26 26 N 1.31855 * 119.61463 * 304.97912 * 21 20 19 27 27 C 1.34260 * 108.48864 * 0.26320 * 19 18 17 28 28 H 1.09002 * 109.47156 * 299.99562 * 1 2 3 29 29 H 1.08998 * 109.47383 * 59.99798 * 1 2 3 30 30 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46528 * 240.00073 * 2 1 3 32 32 H 1.08992 * 109.46961 * 120.00145 * 2 1 3 33 33 H 0.96999 * 119.99755 * 179.97438 * 8 7 5 34 34 H 0.96999 * 119.99768 * 94.99297 * 13 3 2 35 35 H 1.08006 * 125.99334 * 0.06303 * 17 16 14 36 36 H 1.09002 * 109.46850 * 185.02863 * 20 19 18 37 37 H 1.08997 * 109.46942 * 65.02337 * 20 19 18 38 38 H 1.07996 * 120.42433 * 359.71886 * 22 21 20 39 39 H 1.08008 * 120.78599 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.41433 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.61866 * 180.02562 * 25 24 23 42 42 H 1.08003 * 126.28576 * 179.73753 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5893 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7753 3.3740 -2.9864 11 1 3.7401 1.4497 -4.1028 12 1 1.7561 1.1882 -2.7332 13 7 1.6667 2.0925 1.2588 14 6 0.4509 2.6588 1.3901 15 8 -0.3362 2.6307 0.4636 16 6 0.0754 3.3133 2.6566 17 6 0.8789 3.4249 3.8134 18 7 0.1954 4.0684 4.7192 19 7 -1.0599 4.3940 4.1932 20 6 -2.1210 5.1189 4.8968 21 6 -2.4355 4.4161 6.1923 22 6 -2.3789 5.1183 7.3815 23 6 -2.6706 4.4625 8.5676 24 6 -3.0093 3.1190 8.5129 25 6 -3.0460 2.4831 7.2867 26 7 -2.7620 3.1387 6.1780 27 6 -1.1297 3.9255 2.9369 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8251 1.5978 -2.3974 34 1 2.2946 2.1151 1.9977 35 1 1.8833 3.0446 3.9277 36 1 -3.0148 5.1494 4.2737 37 1 -1.7890 6.1357 5.1063 38 1 -2.1069 6.1634 7.3871 39 1 -2.6349 4.9858 9.5118 40 1 -3.2422 2.5766 9.4174 41 1 -3.3093 1.4369 7.2356 42 1 -1.9726 4.0142 2.2676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199579986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:53 Heat of formation + Delta-G solvation = 49.203137 kcal Electronic energy + Delta-G solvation = -25074.761666 eV Core-core repulsion = 21441.465351 eV Total energy + Delta-G solvation = -3633.296315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34989 -41.04585 -40.18818 -36.82948 -35.29737 -34.32646 -33.36229 -33.13073 -32.07034 -31.04087 -29.39870 -27.81837 -24.89359 -24.49648 -23.79007 -23.52923 -21.80466 -21.45082 -20.95959 -19.46594 -18.41507 -17.88503 -17.32392 -17.08838 -16.76377 -16.66576 -16.22469 -15.97063 -15.66109 -15.30203 -15.07494 -14.74653 -14.61622 -14.22172 -14.03728 -13.84049 -13.73741 -13.64642 -13.60424 -13.35198 -12.89712 -12.67557 -12.51800 -12.31814 -12.01883 -11.82777 -11.62976 -11.15942 -10.85017 -10.79849 -10.64808 -10.59958 -10.39089 -10.04850 -9.77337 -9.43604 -8.35354 -6.40565 0.03248 0.34242 0.64815 1.24316 1.32381 1.36081 1.47133 1.47943 2.30817 2.62963 2.67597 2.81111 3.08368 3.16921 3.64444 3.70838 3.87924 3.99137 4.10611 4.19390 4.24520 4.26823 4.37156 4.37548 4.46927 4.56558 4.58998 4.62336 4.79086 4.81108 4.93099 5.14724 5.15680 5.24379 5.31363 5.33554 5.44495 5.48361 5.61676 5.73638 5.86780 5.89243 6.19742 6.56186 6.64636 6.99742 7.05292 7.25750 7.60764 8.79777 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.002728 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.210980 B =10261.050512 C =10405.329231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.244 3.756 4 H 0.031 0.969 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.254 1.254 13 N -0.701 5.701 14 C 0.582 3.418 15 O -0.594 6.594 16 C -0.309 4.309 17 C 0.080 3.920 18 N -0.310 5.310 19 N -0.346 5.346 20 C 0.175 3.825 21 C 0.089 3.911 22 C -0.153 4.153 23 C -0.078 4.078 24 C -0.165 4.165 25 C 0.079 3.921 26 N -0.505 5.505 27 C 0.138 3.862 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.270 0.730 34 H 0.401 0.599 35 H 0.202 0.798 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.616 8.190 21.436 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.140 3.860 4 H 0.049 0.951 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.178 1.178 13 N -0.349 5.349 14 C 0.371 3.629 15 O -0.477 6.477 16 C -0.324 4.324 17 C -0.108 4.108 18 N -0.130 5.130 19 N -0.124 5.124 20 C 0.055 3.945 21 C -0.049 4.049 22 C -0.173 4.173 23 C -0.104 4.104 24 C -0.185 4.185 25 C -0.078 4.078 26 N -0.215 5.215 27 C -0.014 4.014 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.236 0.764 35 H 0.218 0.782 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -20.124 8.281 21.125 30.329 hybrid contribution 0.491 -0.032 -0.688 0.846 sum -19.633 8.248 20.437 29.515 Atomic orbital electron populations 1.21756 0.95856 1.00131 1.01204 1.21984 0.95011 0.98079 1.01119 1.18888 0.93150 0.90200 0.83748 0.95108 1.21225 0.90331 1.50145 0.94553 0.92622 1.25595 0.95759 0.93993 1.01396 1.69987 1.11244 1.50608 1.25199 0.86067 0.80040 0.79286 0.79574 1.20059 1.20403 1.17758 1.46115 1.15146 1.56400 1.17253 1.17625 0.81577 0.77340 0.86335 1.90685 1.51967 1.62620 1.42475 1.20286 0.98127 1.16947 0.97063 1.24304 1.00393 0.96247 0.89807 1.77065 0.92227 1.21017 1.22729 1.48462 1.11866 1.42404 1.09655 1.21067 0.88483 0.94584 0.90365 1.21290 0.97434 0.90732 0.95484 1.22243 1.00068 1.02808 0.92212 1.22029 0.94255 0.94543 0.99578 1.22521 0.99964 0.96195 0.99823 1.23074 0.95772 1.00831 0.88138 1.67361 1.11182 1.09551 1.33418 1.23164 0.98631 0.92520 0.87097 0.93365 0.94599 0.92592 0.93032 0.92195 0.92116 0.76443 0.78182 0.84429 0.84964 0.82004 0.81578 0.82042 0.81878 0.77945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.53 71.98 0.61 -4.71 16 2 C -0.12 -5.41 5.59 30.60 0.17 -5.24 16 3 C 0.24 11.80 1.89 44.25 0.08 11.88 16 4 H 0.03 1.63 4.73 -2.39 -0.01 1.62 16 5 C -0.52 -28.90 9.05 25.60 0.23 -28.67 16 6 H 0.06 3.26 8.06 -2.91 -0.02 3.23 16 7 C 0.03 1.87 5.47 84.65 0.46 2.33 16 8 N -0.93 -56.36 13.96 21.45 0.30 -56.06 16 9 Si 0.93 45.47 26.99 68.60 1.85 47.32 16 10 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.25 -12.16 6.82 99.48 0.68 -11.48 16 13 N -0.70 -29.23 5.02 -449.38 -2.26 -31.49 16 14 C 0.58 23.36 6.41 86.66 0.56 23.92 16 15 O -0.59 -27.04 14.04 -4.05 -0.06 -27.10 16 16 C -0.31 -10.04 6.13 -20.15 -0.12 -10.16 16 17 C 0.08 2.33 11.50 85.65 0.99 3.32 16 18 N -0.31 -8.71 12.32 -56.27 -0.69 -9.40 16 19 N -0.35 -8.11 3.59 -350.02 -1.26 -9.37 16 20 C 0.18 2.56 6.87 85.63 0.59 3.15 16 21 C 0.09 1.53 6.23 42.55 0.27 1.80 16 22 C -0.15 -1.84 9.71 22.36 0.22 -1.62 16 23 C -0.08 -0.78 10.18 22.47 0.23 -0.55 16 24 C -0.17 -1.90 10.11 22.36 0.23 -1.67 16 25 C 0.08 1.34 11.18 84.67 0.95 2.29 16 26 N -0.51 -11.02 10.22 -183.89 -1.88 -12.90 16 27 C 0.14 3.68 11.25 84.28 0.95 4.63 16 28 H 0.05 1.97 5.63 -2.39 -0.01 1.96 16 29 H 0.03 1.53 7.88 -2.39 -0.02 1.51 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.40 14.96 7.55 -92.71 -0.70 14.26 16 35 H 0.20 4.99 7.50 -2.91 -0.02 4.97 16 36 H 0.14 1.33 8.06 -2.39 -0.02 1.32 16 37 H 0.13 1.17 7.87 -2.39 -0.02 1.15 16 38 H 0.16 0.99 7.95 -2.91 -0.02 0.97 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.20 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -77.44 357.47 2.73 -74.71 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.32 Total: 23.61 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.40 Total: 0.68 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.79 Total: -119.22 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.85 Total: 47.32 kcal Total: -77.44 2.73 -74.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199579986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.911 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds