Wall clock time and date at job start Tue Mar 31 2020 11:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 O 1.42894 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.35910 * 117.00164 * 179.97438 * 4 3 2 6 6 C 1.38834 * 119.99189 * 359.72251 * 5 4 3 7 7 C 1.38211 * 120.18422 * 179.72250 * 6 5 4 8 8 C 1.38066 * 120.18087 * 0.55386 * 7 6 5 9 9 C 1.50696 * 120.00570 * 179.74631 * 8 7 6 10 10 C 1.39342 * 119.98677 * 359.72380 * 8 7 6 11 11 C 1.48405 * 120.09410 * 179.97438 * 10 8 7 12 12 C 1.39819 * 119.96125 * 310.01989 * 11 10 8 13 13 C 1.38226 * 120.42134 * 179.97438 * 12 11 10 14 14 C 1.38066 * 120.34848 * 359.97438 * 13 12 11 15 15 F 1.35103 * 120.04479 * 179.97438 * 14 13 12 16 16 C 1.41037 * 119.91758 * 0.02562 * 14 13 12 17 17 C 1.41323 * 120.20664 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99855 * 334.39493 * 17 16 14 19 19 C 1.39914 * 120.00059 * 154.40113 * 17 16 14 20 20 N 1.30859 * 120.00013 * 343.18711 * 19 17 16 21 21 Si 1.86805 * 120.00272 * 163.18243 * 19 17 16 22 22 H 1.48496 * 109.46699 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47010 * 119.99898 * 21 19 17 24 24 H 1.48493 * 109.47301 * 240.00116 * 21 19 17 25 25 C 1.38672 * 119.96604 * 129.74229 * 11 10 8 26 26 C 1.38500 * 119.99594 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46523 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47190 * 299.99452 * 1 2 3 29 29 H 1.08997 * 109.47244 * 60.00788 * 1 2 3 30 30 H 1.08998 * 109.47599 * 239.99891 * 2 1 3 31 31 H 1.08997 * 109.47244 * 119.99212 * 2 1 3 32 32 H 1.08998 * 109.47138 * 59.99608 * 3 2 1 33 33 H 1.09002 * 109.46698 * 300.00096 * 3 2 1 34 34 H 1.07998 * 119.90738 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.90876 * 180.27828 * 7 6 5 36 36 H 1.09001 * 109.46760 * 269.97347 * 9 8 7 37 37 H 1.08993 * 109.47284 * 29.97313 * 9 8 7 38 38 H 1.09001 * 109.47432 * 149.98028 * 9 8 7 39 39 H 1.07997 * 119.78801 * 359.95589 * 12 11 10 40 40 H 1.08001 * 119.83041 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.17134 * 0.02562 * 25 11 10 43 43 H 1.07997 * 120.08926 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4427 -0.0006 5 6 4.0859 2.6536 -0.0012 6 6 3.3295 3.8179 -0.0071 7 6 3.9528 5.0515 -0.0019 8 6 5.3311 5.1328 -0.0025 9 6 6.0065 6.4799 -0.0027 10 6 6.0974 3.9690 -0.0024 11 6 7.5790 4.0536 -0.0036 12 6 8.2310 4.8706 -0.9322 13 6 9.6106 4.9569 -0.9415 14 6 10.3607 4.2373 -0.0328 15 9 11.7087 4.3259 -0.0477 16 6 9.7180 3.4087 0.9103 17 6 10.4798 2.6698 1.8435 18 1 11.4982 2.3948 1.6121 19 6 9.9145 2.2944 3.0671 20 7 8.8279 2.8851 3.4945 21 14 10.7109 0.9497 4.0905 22 1 11.9199 0.4458 3.3910 23 1 11.0986 1.4994 5.4145 24 1 9.7476 -0.1643 4.2799 25 6 8.3150 3.3268 0.9200 26 6 5.4690 2.7261 -0.0013 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9563 -0.8900 34 1 2.2512 3.7594 -0.0115 35 1 3.3601 5.9543 -0.0020 36 1 6.1693 6.8045 -1.0304 37 1 5.3739 7.2036 0.5110 38 1 6.9650 6.4059 0.5111 39 1 7.6531 5.4376 -1.6470 40 1 10.1043 5.5907 -1.6633 41 1 8.4362 2.6251 4.3430 42 1 7.8129 2.6984 1.6406 43 1 6.0585 1.8212 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222179517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:14 Heat of formation + Delta-G solvation = -77.592690 kcal Electronic energy + Delta-G solvation = -25192.210366 eV Core-core repulsion = 21501.203059 eV Total energy + Delta-G solvation = -3691.007307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.21831 -41.23255 -39.71281 -38.25472 -35.73509 -34.90577 -33.09247 -32.77852 -31.61668 -29.76974 -27.86799 -27.30610 -26.60267 -24.32133 -23.20307 -22.49886 -22.29698 -21.26066 -19.51328 -18.50253 -18.00239 -17.23000 -17.19472 -16.97844 -16.40545 -16.21068 -15.97826 -15.82925 -15.15354 -15.03983 -14.74592 -14.52594 -14.48842 -14.24928 -13.85770 -13.69123 -13.48655 -13.21406 -13.05076 -12.99948 -12.86016 -12.79030 -12.72017 -12.33934 -12.17810 -12.10562 -12.00672 -11.85140 -11.54215 -11.47310 -11.32320 -11.14082 -10.00909 -9.52928 -9.14395 -8.81231 -8.68299 -6.45257 0.11737 0.50687 0.86696 0.95397 1.33766 1.44368 1.49476 2.15988 2.24193 2.57831 2.84049 3.48348 3.79766 3.89460 3.95394 4.00141 4.02697 4.12618 4.24676 4.30348 4.33123 4.38888 4.50906 4.56288 4.64199 4.71061 4.82981 4.86431 4.93461 4.96350 5.05001 5.11677 5.13749 5.17959 5.22221 5.25557 5.35807 5.36992 5.43591 5.52388 5.68383 5.76009 5.90447 5.98400 6.02930 6.14348 6.51451 6.52613 6.74621 6.83400 8.22934 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.003993 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.013400 B = 7010.024522 C = 8713.146504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.339 6.339 5 C 0.116 3.884 6 C -0.206 4.206 7 C -0.075 4.075 8 C -0.122 4.122 9 C -0.105 4.105 10 C -0.003 4.003 11 C -0.048 4.048 12 C -0.182 4.182 13 C -0.120 4.120 14 C -0.058 4.058 15 F -0.170 7.170 16 C 0.055 3.945 17 C -0.495 4.495 18 H 0.071 0.929 19 C 0.039 3.961 20 N -0.816 5.816 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.261 1.261 24 H -0.260 1.260 25 C -0.140 4.140 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.291 0.709 42 H 0.110 0.890 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 0.313 -4.725 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.024 4.024 4 O -0.254 6.254 5 C 0.071 3.929 6 C -0.224 4.224 7 C -0.093 4.093 8 C -0.122 4.122 9 C -0.161 4.161 10 C -0.003 4.003 11 C -0.048 4.048 12 C -0.201 4.201 13 C -0.139 4.139 14 C -0.078 4.078 15 F -0.149 7.149 16 C 0.052 3.948 17 C -0.523 4.523 18 H 0.089 0.911 19 C -0.177 4.177 20 N -0.442 5.442 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.185 1.185 24 H -0.185 1.185 25 C -0.160 4.160 26 C -0.183 4.183 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.433 0.140 -4.522 18.011 hybrid contribution 1.048 -0.665 0.660 1.405 sum -16.385 -0.524 -3.862 16.842 Atomic orbital electron populations 1.21666 0.92289 1.03237 1.02871 1.21524 0.97540 0.93976 1.03129 1.23146 0.76861 0.99944 1.02405 1.86037 1.23224 1.27181 1.88934 1.18861 0.91380 0.85126 0.97500 1.21466 1.00922 0.91403 1.08643 1.21075 0.92936 0.98192 0.97106 1.20117 0.94088 0.94926 1.03050 1.20797 1.00081 0.92443 1.02813 1.18650 0.91812 0.92583 0.97303 1.18711 0.91266 0.98280 0.96552 1.20571 0.92515 1.04722 1.02328 1.20756 0.94534 1.00106 0.98487 1.18268 0.76157 1.07093 1.06286 1.91236 1.31131 1.95855 1.96711 1.17893 0.93381 0.91402 0.92130 1.19679 1.00153 1.31725 1.00792 0.91115 1.26704 0.94940 0.97541 0.98483 1.69855 1.18978 1.35304 1.20017 0.85163 0.79259 0.77668 0.77741 1.18431 1.18526 1.18464 1.21167 0.92537 1.02268 0.99989 1.20432 0.92334 0.97505 1.07991 0.90994 0.91786 0.91507 0.91335 0.91733 0.91153 0.90654 0.82610 0.82228 0.89997 0.89984 0.93389 0.84719 0.84806 0.89816 0.87249 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.12 -2.10 6.30 30.60 0.19 -1.91 16 3 C 0.05 1.02 4.74 71.98 0.34 1.36 16 4 O -0.34 -10.37 10.13 -92.54 -0.94 -11.31 16 5 C 0.12 3.84 6.68 22.47 0.15 3.99 16 6 C -0.21 -5.40 9.03 22.41 0.20 -5.20 16 7 C -0.08 -1.96 9.68 22.22 0.22 -1.75 16 8 C -0.12 -3.97 5.87 -19.64 -0.12 -4.09 16 9 C -0.10 -3.01 8.44 71.23 0.60 -2.41 16 10 C 0.00 -0.13 5.46 -20.05 -0.11 -0.24 16 11 C -0.05 -2.19 4.71 -20.08 -0.09 -2.28 16 12 C -0.18 -7.62 7.90 22.65 0.18 -7.44 16 13 C -0.12 -5.33 9.99 22.23 0.22 -5.11 16 14 C -0.06 -3.04 7.31 22.92 0.17 -2.88 16 15 F -0.17 -8.95 16.71 44.97 0.75 -8.20 16 16 C 0.05 3.09 5.57 -21.27 -0.12 2.97 16 17 C -0.49 -28.09 8.77 23.44 0.21 -27.88 16 18 H 0.07 4.03 7.74 -2.91 -0.02 4.00 16 19 C 0.04 2.04 5.15 85.24 0.44 2.47 16 20 N -0.82 -43.44 10.95 21.82 0.24 -43.21 16 21 Si 0.98 39.60 29.59 68.60 2.03 41.63 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 C -0.14 -7.46 8.13 22.93 0.19 -7.28 16 26 C -0.16 -6.50 9.44 22.58 0.21 -6.29 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.25 7.67 -2.39 -0.02 1.24 16 33 H 0.08 1.26 7.64 -2.39 -0.02 1.24 16 34 H 0.16 2.91 6.28 -2.91 -0.02 2.89 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.08 2.03 7.48 -2.39 -0.02 2.01 16 37 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 38 H 0.05 1.68 6.45 -2.39 -0.02 1.67 16 39 H 0.14 4.70 6.82 -2.91 -0.02 4.68 16 40 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 41 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 42 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16 43 H 0.11 4.52 8.04 -2.91 -0.02 4.50 16 Total: -1.00 -65.35 359.29 6.69 -58.66 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 1.02 Total: 27.27 kcal Atomic # 6 Polarization: -68.43 SS G_CDS: 3.59 Total: -64.84 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.24 Total: -43.21 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.94 Total: -11.31 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.75 Total: -8.20 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -65.35 6.69 -58.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222179517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.937 kcal (2) G-P(sol) polarization free energy of solvation -65.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds