Wall clock time and date at job start Tue Mar 31 2020 11:52:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46791 * 2 1
4 4 O 1.42894 * 109.47088 * 180.02562 * 3 2 1
5 5 C 1.35910 * 117.00164 * 179.97438 * 4 3 2
6 6 C 1.38834 * 119.99189 * 359.72251 * 5 4 3
7 7 C 1.38211 * 120.18422 * 179.72250 * 6 5 4
8 8 C 1.38066 * 120.18087 * 0.55386 * 7 6 5
9 9 C 1.50696 * 120.00570 * 179.74631 * 8 7 6
10 10 C 1.39342 * 119.98677 * 359.72380 * 8 7 6
11 11 C 1.48405 * 120.09410 * 179.97438 * 10 8 7
12 12 C 1.39819 * 119.96125 * 310.01989 * 11 10 8
13 13 C 1.38226 * 120.42134 * 179.97438 * 12 11 10
14 14 C 1.38066 * 120.34848 * 359.97438 * 13 12 11
15 15 F 1.35103 * 120.04479 * 179.97438 * 14 13 12
16 16 C 1.41037 * 119.91758 * 0.02562 * 14 13 12
17 17 C 1.41323 * 120.20664 * 180.02562 * 16 14 13
18 18 H 1.07997 * 119.99855 * 334.39493 * 17 16 14
19 19 C 1.39914 * 120.00059 * 154.40113 * 17 16 14
20 20 N 1.30859 * 120.00013 * 343.18711 * 19 17 16
21 21 Si 1.86805 * 120.00272 * 163.18243 * 19 17 16
22 22 H 1.48496 * 109.46699 * 0.02562 * 21 19 17
23 23 H 1.48500 * 109.47010 * 119.99898 * 21 19 17
24 24 H 1.48493 * 109.47301 * 240.00116 * 21 19 17
25 25 C 1.38672 * 119.96604 * 129.74229 * 11 10 8
26 26 C 1.38500 * 119.99594 * 179.97438 * 5 4 3
27 27 H 1.09005 * 109.46523 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47190 * 299.99452 * 1 2 3
29 29 H 1.08997 * 109.47244 * 60.00788 * 1 2 3
30 30 H 1.08998 * 109.47599 * 239.99891 * 2 1 3
31 31 H 1.08997 * 109.47244 * 119.99212 * 2 1 3
32 32 H 1.08998 * 109.47138 * 59.99608 * 3 2 1
33 33 H 1.09002 * 109.46698 * 300.00096 * 3 2 1
34 34 H 1.07998 * 119.90738 * 359.97438 * 6 5 4
35 35 H 1.08000 * 119.90876 * 180.27828 * 7 6 5
36 36 H 1.09001 * 109.46760 * 269.97347 * 9 8 7
37 37 H 1.08993 * 109.47284 * 29.97313 * 9 8 7
38 38 H 1.09001 * 109.47432 * 149.98028 * 9 8 7
39 39 H 1.07997 * 119.78801 * 359.95589 * 12 11 10
40 40 H 1.08001 * 119.83041 * 179.97438 * 13 12 11
41 41 H 0.97001 * 120.00287 * 180.02562 * 20 19 17
42 42 H 1.07994 * 120.17134 * 0.02562 * 25 11 10
43 43 H 1.07997 * 120.08926 * 359.97438 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 8 3.4689 1.4427 -0.0006
5 6 4.0859 2.6536 -0.0012
6 6 3.3295 3.8179 -0.0071
7 6 3.9528 5.0515 -0.0019
8 6 5.3311 5.1328 -0.0025
9 6 6.0065 6.4799 -0.0027
10 6 6.0974 3.9690 -0.0024
11 6 7.5790 4.0536 -0.0036
12 6 8.2310 4.8706 -0.9322
13 6 9.6106 4.9569 -0.9415
14 6 10.3607 4.2373 -0.0328
15 9 11.7087 4.3259 -0.0477
16 6 9.7180 3.4087 0.9103
17 6 10.4798 2.6698 1.8435
18 1 11.4982 2.3948 1.6121
19 6 9.9145 2.2944 3.0671
20 7 8.8279 2.8851 3.4945
21 14 10.7109 0.9497 4.0905
22 1 11.9199 0.4458 3.3910
23 1 11.0986 1.4994 5.4145
24 1 9.7476 -0.1643 4.2799
25 6 8.3150 3.3268 0.9200
26 6 5.4690 2.7261 -0.0013
27 1 -0.3632 -1.0277 0.0005
28 1 -0.3633 0.5137 0.8900
29 1 -0.3633 0.5137 -0.8900
30 1 1.8934 -0.5138 -0.8899
31 1 1.8933 -0.5137 0.8900
32 1 1.6765 1.9564 0.8899
33 1 1.6765 1.9563 -0.8900
34 1 2.2512 3.7594 -0.0115
35 1 3.3601 5.9543 -0.0020
36 1 6.1693 6.8045 -1.0304
37 1 5.3739 7.2036 0.5110
38 1 6.9650 6.4059 0.5111
39 1 7.6531 5.4376 -1.6470
40 1 10.1043 5.5907 -1.6633
41 1 8.4362 2.6251 4.3430
42 1 7.8129 2.6984 1.6406
43 1 6.0585 1.8212 -0.0004
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001222179517.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:52:14
Heat of formation + Delta-G solvation = -77.592690 kcal
Electronic energy + Delta-G solvation = -25192.210366 eV
Core-core repulsion = 21501.203059 eV
Total energy + Delta-G solvation = -3691.007307 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.21831 -41.23255 -39.71281 -38.25472 -35.73509 -34.90577 -33.09247 -32.77852
-31.61668 -29.76974 -27.86799 -27.30610 -26.60267 -24.32133 -23.20307 -22.49886
-22.29698 -21.26066 -19.51328 -18.50253 -18.00239 -17.23000 -17.19472 -16.97844
-16.40545 -16.21068 -15.97826 -15.82925 -15.15354 -15.03983 -14.74592 -14.52594
-14.48842 -14.24928 -13.85770 -13.69123 -13.48655 -13.21406 -13.05076 -12.99948
-12.86016 -12.79030 -12.72017 -12.33934 -12.17810 -12.10562 -12.00672 -11.85140
-11.54215 -11.47310 -11.32320 -11.14082 -10.00909 -9.52928 -9.14395 -8.81231
-8.68299 -6.45257 0.11737 0.50687 0.86696 0.95397 1.33766 1.44368
1.49476 2.15988 2.24193 2.57831 2.84049 3.48348 3.79766 3.89460
3.95394 4.00141 4.02697 4.12618 4.24676 4.30348 4.33123 4.38888
4.50906 4.56288 4.64199 4.71061 4.82981 4.86431 4.93461 4.96350
5.05001 5.11677 5.13749 5.17959 5.22221 5.25557 5.35807 5.36992
5.43591 5.52388 5.68383 5.76009 5.90447 5.98400 6.02930 6.14348
6.51451 6.52613 6.74621 6.83400 8.22934
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.011454 B = 0.003993 C = 0.003213
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2444.013400 B = 7010.024522 C = 8713.146504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.124 4.124
3 C 0.051 3.949
4 O -0.339 6.339
5 C 0.116 3.884
6 C -0.206 4.206
7 C -0.075 4.075
8 C -0.122 4.122
9 C -0.105 4.105
10 C -0.003 4.003
11 C -0.048 4.048
12 C -0.182 4.182
13 C -0.120 4.120
14 C -0.058 4.058
15 F -0.170 7.170
16 C 0.055 3.945
17 C -0.495 4.495
18 H 0.071 0.929
19 C 0.039 3.961
20 N -0.816 5.816
21 Si 0.982 3.018
22 H -0.261 1.261
23 H -0.261 1.261
24 H -0.260 1.260
25 C -0.140 4.140
26 C -0.164 4.164
27 H 0.071 0.929
28 H 0.063 0.937
29 H 0.066 0.934
30 H 0.068 0.932
31 H 0.064 0.936
32 H 0.070 0.930
33 H 0.075 0.925
34 H 0.156 0.844
35 H 0.160 0.840
36 H 0.081 0.919
37 H 0.081 0.919
38 H 0.047 0.953
39 H 0.135 0.865
40 H 0.134 0.866
41 H 0.291 0.709
42 H 0.110 0.890
43 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.393 0.313 -4.725 18.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.162 4.162
3 C -0.024 4.024
4 O -0.254 6.254
5 C 0.071 3.929
6 C -0.224 4.224
7 C -0.093 4.093
8 C -0.122 4.122
9 C -0.161 4.161
10 C -0.003 4.003
11 C -0.048 4.048
12 C -0.201 4.201
13 C -0.139 4.139
14 C -0.078 4.078
15 F -0.149 7.149
16 C 0.052 3.948
17 C -0.523 4.523
18 H 0.089 0.911
19 C -0.177 4.177
20 N -0.442 5.442
21 Si 0.802 3.198
22 H -0.184 1.184
23 H -0.185 1.185
24 H -0.185 1.185
25 C -0.160 4.160
26 C -0.183 4.183
27 H 0.090 0.910
28 H 0.082 0.918
29 H 0.085 0.915
30 H 0.087 0.913
31 H 0.083 0.917
32 H 0.088 0.912
33 H 0.093 0.907
34 H 0.174 0.826
35 H 0.178 0.822
36 H 0.100 0.900
37 H 0.100 0.900
38 H 0.066 0.934
39 H 0.153 0.847
40 H 0.152 0.848
41 H 0.102 0.898
42 H 0.128 0.872
43 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -17.433 0.140 -4.522 18.011
hybrid contribution 1.048 -0.665 0.660 1.405
sum -16.385 -0.524 -3.862 16.842
Atomic orbital electron populations
1.21666 0.92289 1.03237 1.02871 1.21524 0.97540 0.93976 1.03129
1.23146 0.76861 0.99944 1.02405 1.86037 1.23224 1.27181 1.88934
1.18861 0.91380 0.85126 0.97500 1.21466 1.00922 0.91403 1.08643
1.21075 0.92936 0.98192 0.97106 1.20117 0.94088 0.94926 1.03050
1.20797 1.00081 0.92443 1.02813 1.18650 0.91812 0.92583 0.97303
1.18711 0.91266 0.98280 0.96552 1.20571 0.92515 1.04722 1.02328
1.20756 0.94534 1.00106 0.98487 1.18268 0.76157 1.07093 1.06286
1.91236 1.31131 1.95855 1.96711 1.17893 0.93381 0.91402 0.92130
1.19679 1.00153 1.31725 1.00792 0.91115 1.26704 0.94940 0.97541
0.98483 1.69855 1.18978 1.35304 1.20017 0.85163 0.79259 0.77668
0.77741 1.18431 1.18526 1.18464 1.21167 0.92537 1.02268 0.99989
1.20432 0.92334 0.97505 1.07991 0.90994 0.91786 0.91507 0.91335
0.91733 0.91153 0.90654 0.82610 0.82228 0.89997 0.89984 0.93389
0.84719 0.84806 0.89816 0.87249 0.87674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.60 9.91 71.98 0.71 -0.88 16
2 C -0.12 -2.10 6.30 30.60 0.19 -1.91 16
3 C 0.05 1.02 4.74 71.98 0.34 1.36 16
4 O -0.34 -10.37 10.13 -92.54 -0.94 -11.31 16
5 C 0.12 3.84 6.68 22.47 0.15 3.99 16
6 C -0.21 -5.40 9.03 22.41 0.20 -5.20 16
7 C -0.08 -1.96 9.68 22.22 0.22 -1.75 16
8 C -0.12 -3.97 5.87 -19.64 -0.12 -4.09 16
9 C -0.10 -3.01 8.44 71.23 0.60 -2.41 16
10 C 0.00 -0.13 5.46 -20.05 -0.11 -0.24 16
11 C -0.05 -2.19 4.71 -20.08 -0.09 -2.28 16
12 C -0.18 -7.62 7.90 22.65 0.18 -7.44 16
13 C -0.12 -5.33 9.99 22.23 0.22 -5.11 16
14 C -0.06 -3.04 7.31 22.92 0.17 -2.88 16
15 F -0.17 -8.95 16.71 44.97 0.75 -8.20 16
16 C 0.05 3.09 5.57 -21.27 -0.12 2.97 16
17 C -0.49 -28.09 8.77 23.44 0.21 -27.88 16
18 H 0.07 4.03 7.74 -2.91 -0.02 4.00 16
19 C 0.04 2.04 5.15 85.24 0.44 2.47 16
20 N -0.82 -43.44 10.95 21.82 0.24 -43.21 16
21 Si 0.98 39.60 29.59 68.60 2.03 41.63 16
22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16
23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16
24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16
25 C -0.14 -7.46 8.13 22.93 0.19 -7.28 16
26 C -0.16 -6.50 9.44 22.58 0.21 -6.29 16
27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16
28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.07 1.25 7.67 -2.39 -0.02 1.24 16
33 H 0.08 1.26 7.64 -2.39 -0.02 1.24 16
34 H 0.16 2.91 6.28 -2.91 -0.02 2.89 16
35 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16
36 H 0.08 2.03 7.48 -2.39 -0.02 2.01 16
37 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16
38 H 0.05 1.68 6.45 -2.39 -0.02 1.67 16
39 H 0.14 4.70 6.82 -2.91 -0.02 4.68 16
40 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16
41 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16
42 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16
43 H 0.11 4.52 8.04 -2.91 -0.02 4.50 16
Total: -1.00 -65.35 359.29 6.69 -58.66
By element:
Atomic # 1 Polarization: 26.25 SS G_CDS: 1.02 Total: 27.27 kcal
Atomic # 6 Polarization: -68.43 SS G_CDS: 3.59 Total: -64.84 kcal
Atomic # 7 Polarization: -43.44 SS G_CDS: 0.24 Total: -43.21 kcal
Atomic # 8 Polarization: -10.37 SS G_CDS: -0.94 Total: -11.31 kcal
Atomic # 9 Polarization: -8.95 SS G_CDS: 0.75 Total: -8.20 kcal
Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal
Total: -65.35 6.69 -58.66 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001222179517.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.937 kcal
(2) G-P(sol) polarization free energy of solvation -65.346 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds