Wall clock time and date at job start Tue Mar 31 2020 10:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47175 * 2 1 4 4 H 1.08999 * 109.46778 * 54.99896 * 3 2 1 5 5 O 1.42906 * 109.46896 * 295.00289 * 3 2 1 6 6 C 1.35676 * 117.00124 * 95.29682 * 5 3 2 7 7 C 1.39311 * 119.81706 * 182.36805 * 6 5 3 8 8 C 1.36440 * 120.18413 * 179.76034 * 7 6 5 9 9 C 1.40826 * 119.81030 * 0.51902 * 8 7 6 10 10 C 1.41217 * 120.17915 * 179.71874 * 9 8 7 11 11 H 1.07991 * 119.99710 * 25.39540 * 10 9 8 12 12 C 1.39895 * 119.99884 * 205.40250 * 10 9 8 13 13 N 1.30877 * 120.00003 * 16.79718 * 12 10 9 14 14 Si 1.86802 * 119.99848 * 196.80221 * 12 10 9 15 15 H 1.48497 * 109.47007 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46905 * 119.99721 * 14 12 10 17 17 H 1.48489 * 109.47238 * 239.99896 * 14 12 10 18 18 C 1.40843 * 119.64395 * 359.73874 * 9 8 7 19 19 C 1.36436 * 119.80749 * 0.02562 * 18 9 8 20 20 C 1.50695 * 109.47364 * 175.00139 * 3 2 1 21 21 C 1.38268 * 119.98766 * 94.72262 * 20 3 2 22 22 C 1.38222 * 120.05140 * 179.72798 * 21 20 3 23 23 C 1.38223 * 120.02239 * 0.54616 * 22 21 20 24 24 C 1.38438 * 119.97538 * 359.72925 * 23 22 21 25 25 F 1.35107 * 120.02374 * 180.02562 * 24 23 22 26 26 C 1.38180 * 119.98799 * 275.00024 * 20 3 2 27 27 C 1.50703 * 120.00899 * 0.02562 * 26 20 3 28 28 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46859 * 300.00123 * 1 2 3 30 30 H 1.08998 * 109.47022 * 59.99874 * 1 2 3 31 31 H 1.08996 * 109.47445 * 119.99815 * 2 1 3 32 32 H 1.08996 * 109.47155 * 240.00351 * 2 1 3 33 33 H 1.07998 * 119.90514 * 0.03048 * 7 6 5 34 34 H 1.08000 * 120.08971 * 180.25725 * 8 7 6 35 35 H 0.97006 * 119.99666 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.09280 * 179.97438 * 18 9 8 37 37 H 1.08005 * 119.90471 * 179.97438 * 19 18 9 38 38 H 1.07997 * 119.97171 * 359.97438 * 21 20 3 39 39 H 1.07996 * 119.98750 * 180.27976 * 22 21 20 40 40 H 1.08007 * 120.00931 * 179.70492 * 23 22 21 41 41 H 1.09000 * 109.46778 * 90.00154 * 27 26 20 42 42 H 1.09000 * 109.46909 * 209.99809 * 27 26 20 43 43 H 1.08994 * 109.47374 * 330.00327 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5203 2.8144 -1.2049 7 6 0.0704 3.4217 -2.3752 8 6 -1.0792 4.1564 -2.3686 9 6 -1.8057 4.3091 -1.1719 10 6 -2.9934 5.0728 -1.1549 11 1 -3.5692 5.1958 -2.0602 12 6 -3.4239 5.6701 0.0346 13 7 -2.5924 5.8084 1.0357 14 14 -5.1858 6.2700 0.1941 15 1 -5.9173 5.9989 -1.0695 16 1 -5.8515 5.5582 1.3145 17 1 -5.1890 7.7302 0.4638 18 6 -1.3410 3.6963 0.0081 19 6 -0.1921 2.9609 -0.0168 20 6 3.5419 1.4444 0.1238 21 6 4.3288 1.5091 -1.0113 22 6 5.7064 1.5166 -0.8990 23 6 6.2991 1.4479 0.3479 24 6 5.5122 1.3773 1.4847 25 9 6.0904 1.3107 2.7040 26 6 4.1322 1.3756 1.3713 27 6 3.2742 1.2982 2.6078 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.6309 3.3069 -3.2912 34 1 -1.4288 4.6231 -3.2777 35 1 -2.8911 6.2222 1.8607 36 1 -1.8922 3.8089 0.9300 37 1 0.1659 2.4907 0.8873 38 1 3.8666 1.5579 -1.9861 39 1 6.3200 1.5717 -1.7860 40 1 7.3756 1.4490 0.4351 41 1 3.0740 0.2536 2.8462 42 1 3.7958 1.7677 3.4419 43 1 2.3324 1.8171 2.4297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225266155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:01 Heat of formation + Delta-G solvation = -47.646253 kcal Electronic energy + Delta-G solvation = -25725.774746 eV Core-core repulsion = 22036.066014 eV Total energy + Delta-G solvation = -3689.708732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.92930 -40.06618 -38.55452 -36.54717 -34.00987 -33.23973 -32.37713 -30.81474 -29.61887 -29.08419 -27.25755 -26.09087 -24.70403 -22.39026 -22.03329 -21.58943 -20.85770 -19.62051 -17.64710 -17.34883 -17.16284 -16.08995 -15.73592 -15.68008 -15.29941 -15.09825 -14.60986 -14.22699 -13.93681 -13.66610 -13.49484 -13.25366 -12.91788 -12.80628 -12.58471 -12.40358 -12.20083 -12.05328 -11.87691 -11.68580 -11.55802 -11.38809 -11.32250 -11.13807 -10.98352 -10.74069 -10.58882 -10.36160 -9.92778 -9.76736 -9.29147 -9.03601 -8.76637 -8.61551 -7.65732 -7.00009 -6.73340 -4.26775 1.12601 1.15806 2.74370 2.94852 3.07898 3.12908 3.18852 3.51937 3.85177 3.94451 4.32560 4.58755 4.64542 4.70212 4.88976 5.02173 5.17989 5.24543 5.29713 5.45922 5.53934 5.59520 5.63070 5.65329 5.84573 5.94194 6.02237 6.07876 6.09426 6.12502 6.16030 6.23983 6.31763 6.38927 6.46018 6.66181 6.74349 6.87833 6.89559 7.05802 7.26969 7.40146 7.54116 7.88593 7.98844 8.13741 8.42655 8.63681 8.89255 8.97440 10.21165 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003208 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.379444 B = 8725.558498 C = 9111.288772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.121 3.879 4 H 0.091 0.909 5 O -0.316 6.316 6 C -0.005 4.005 7 C -0.114 4.114 8 C -0.196 4.196 9 C 0.088 3.912 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.075 3.925 13 N -0.801 5.801 14 Si 0.906 3.094 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.275 1.275 18 C -0.131 4.131 19 C -0.173 4.173 20 C -0.053 4.053 21 C -0.098 4.098 22 C -0.101 4.101 23 C -0.155 4.155 24 C 0.091 3.909 25 F -0.141 7.141 26 C -0.111 4.111 27 C -0.121 4.121 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.278 0.722 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.273 -9.306 1.460 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.064 3.936 4 H 0.108 0.892 5 O -0.232 6.232 6 C -0.047 4.047 7 C -0.133 4.133 8 C -0.216 4.216 9 C 0.086 3.914 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.427 5.427 14 Si 0.730 3.270 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.151 4.151 19 C -0.192 4.192 20 C -0.053 4.053 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.174 4.174 24 C 0.072 3.928 25 F -0.120 7.120 26 C -0.112 4.112 27 C -0.178 4.178 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.419 -9.228 1.585 14.766 hybrid contribution -0.603 0.423 0.621 0.964 sum 10.815 -8.804 2.206 14.119 Atomic orbital electron populations 1.21901 0.94533 1.01217 1.03549 1.21930 0.97182 0.95439 1.02276 1.21052 0.89273 0.93779 0.89496 0.89155 1.85830 1.40865 1.63850 1.32668 1.18494 0.89387 1.01953 0.94913 1.19584 0.97838 1.01120 0.94712 1.20583 0.96545 1.05840 0.98623 1.17591 0.92307 0.90680 0.90848 1.19501 1.06672 1.27484 0.95670 0.90533 1.25858 0.98836 0.94231 0.95222 1.69839 1.35034 1.33367 1.04494 0.86303 0.82643 0.78653 0.79366 1.18471 1.19811 1.20095 1.20938 0.96502 0.97921 0.99704 1.20617 0.98776 1.04533 0.95254 1.19617 0.95351 0.98405 0.91931 1.21142 0.92985 0.98127 0.99399 1.21007 0.94894 0.99275 0.96709 1.21092 1.00205 1.04311 0.91751 1.17401 0.90557 1.04696 0.80175 1.91463 1.84688 1.93942 1.41887 1.19648 0.92201 1.03333 0.95994 1.20844 0.99605 1.02856 0.94454 0.93192 0.92433 0.91014 0.91440 0.91310 0.88640 0.88327 0.91079 0.86180 0.88475 0.84421 0.85088 0.85038 0.90596 0.91074 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.49 37.16 0.32 -1.98 16 2 C -0.13 -1.80 5.62 -26.73 -0.15 -1.95 16 3 C 0.12 1.90 1.87 -27.88 -0.05 1.85 16 4 H 0.09 1.50 3.29 -51.93 -0.17 1.32 16 5 O -0.32 -5.98 8.48 -18.73 -0.16 -6.14 16 6 C 0.00 -0.10 5.36 -38.78 -0.21 -0.31 16 7 C -0.11 -2.54 9.92 -39.83 -0.40 -2.93 16 8 C -0.20 -4.70 9.74 -39.25 -0.38 -5.08 16 9 C 0.09 2.28 5.57 -106.80 -0.59 1.69 16 10 C -0.46 -12.08 9.04 -37.83 -0.34 -12.42 16 11 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 12 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 13 N -0.80 -20.44 10.95 55.54 0.61 -19.84 16 14 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 18 C -0.13 -3.28 8.64 -39.25 -0.34 -3.61 16 19 C -0.17 -3.83 7.21 -39.83 -0.29 -4.12 16 20 C -0.05 -0.76 5.06 -104.63 -0.53 -1.29 16 21 C -0.10 -1.32 9.35 -39.58 -0.37 -1.69 16 22 C -0.10 -1.13 10.04 -39.59 -0.40 -1.53 16 23 C -0.15 -1.77 10.03 -39.51 -0.40 -2.16 16 24 C 0.09 1.18 7.24 -39.42 -0.29 0.90 16 25 F -0.14 -1.85 16.48 2.25 0.04 -1.81 16 26 C -0.11 -1.50 5.89 -104.56 -0.62 -2.11 16 27 C -0.12 -1.44 9.22 36.01 0.33 -1.11 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.86 6.91 -51.93 -0.36 0.50 16 30 H 0.07 1.25 6.37 -51.93 -0.33 0.92 16 31 H 0.07 0.81 7.93 -51.93 -0.41 0.39 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 36 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 37 H 0.10 1.92 4.62 -52.48 -0.24 1.68 16 38 H 0.14 1.86 7.36 -52.49 -0.39 1.47 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.80 7.64 -51.93 -0.40 0.40 16 43 H 0.08 0.96 6.03 -51.93 -0.31 0.64 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -27.15 349.45 -9.51 -36.66 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.44 Total: 8.48 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -4.79 Total: -36.09 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.84 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.16 Total: -6.14 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.15 -9.51 -36.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.986 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds