Wall clock time and date at job start Tue Mar 31 2020 10:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47175 * 2 1 4 4 H 1.08999 * 109.46778 * 54.99896 * 3 2 1 5 5 O 1.42906 * 109.46896 * 295.00289 * 3 2 1 6 6 C 1.35676 * 117.00124 * 95.29682 * 5 3 2 7 7 C 1.39311 * 119.81706 * 182.36805 * 6 5 3 8 8 C 1.36440 * 120.18413 * 179.76034 * 7 6 5 9 9 C 1.40826 * 119.81030 * 0.51902 * 8 7 6 10 10 C 1.41217 * 120.17915 * 179.71874 * 9 8 7 11 11 H 1.07991 * 119.99710 * 25.39540 * 10 9 8 12 12 C 1.39895 * 119.99884 * 205.40250 * 10 9 8 13 13 N 1.30877 * 120.00003 * 16.79718 * 12 10 9 14 14 Si 1.86802 * 119.99848 * 196.80221 * 12 10 9 15 15 H 1.48497 * 109.47007 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46905 * 119.99721 * 14 12 10 17 17 H 1.48489 * 109.47238 * 239.99896 * 14 12 10 18 18 C 1.40843 * 119.64395 * 359.73874 * 9 8 7 19 19 C 1.36436 * 119.80749 * 0.02562 * 18 9 8 20 20 C 1.50695 * 109.47364 * 175.00139 * 3 2 1 21 21 C 1.38268 * 119.98766 * 94.72262 * 20 3 2 22 22 C 1.38222 * 120.05140 * 179.72798 * 21 20 3 23 23 C 1.38223 * 120.02239 * 0.54616 * 22 21 20 24 24 C 1.38438 * 119.97538 * 359.72925 * 23 22 21 25 25 F 1.35107 * 120.02374 * 180.02562 * 24 23 22 26 26 C 1.38180 * 119.98799 * 275.00024 * 20 3 2 27 27 C 1.50703 * 120.00899 * 0.02562 * 26 20 3 28 28 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46859 * 300.00123 * 1 2 3 30 30 H 1.08998 * 109.47022 * 59.99874 * 1 2 3 31 31 H 1.08996 * 109.47445 * 119.99815 * 2 1 3 32 32 H 1.08996 * 109.47155 * 240.00351 * 2 1 3 33 33 H 1.07998 * 119.90514 * 0.03048 * 7 6 5 34 34 H 1.08000 * 120.08971 * 180.25725 * 8 7 6 35 35 H 0.97006 * 119.99666 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.09280 * 179.97438 * 18 9 8 37 37 H 1.08005 * 119.90471 * 179.97438 * 19 18 9 38 38 H 1.07997 * 119.97171 * 359.97438 * 21 20 3 39 39 H 1.07996 * 119.98750 * 180.27976 * 22 21 20 40 40 H 1.08007 * 120.00931 * 179.70492 * 23 22 21 41 41 H 1.09000 * 109.46778 * 90.00154 * 27 26 20 42 42 H 1.09000 * 109.46909 * 209.99809 * 27 26 20 43 43 H 1.08994 * 109.47374 * 330.00327 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5203 2.8144 -1.2049 7 6 0.0704 3.4217 -2.3752 8 6 -1.0792 4.1564 -2.3686 9 6 -1.8057 4.3091 -1.1719 10 6 -2.9934 5.0728 -1.1549 11 1 -3.5692 5.1958 -2.0602 12 6 -3.4239 5.6701 0.0346 13 7 -2.5924 5.8084 1.0357 14 14 -5.1858 6.2700 0.1941 15 1 -5.9173 5.9989 -1.0695 16 1 -5.8515 5.5582 1.3145 17 1 -5.1890 7.7302 0.4638 18 6 -1.3410 3.6963 0.0081 19 6 -0.1921 2.9609 -0.0168 20 6 3.5419 1.4444 0.1238 21 6 4.3288 1.5091 -1.0113 22 6 5.7064 1.5166 -0.8990 23 6 6.2991 1.4479 0.3479 24 6 5.5122 1.3773 1.4847 25 9 6.0904 1.3107 2.7040 26 6 4.1322 1.3756 1.3713 27 6 3.2742 1.2982 2.6078 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.6309 3.3069 -3.2912 34 1 -1.4288 4.6231 -3.2777 35 1 -2.8911 6.2222 1.8607 36 1 -1.8922 3.8089 0.9300 37 1 0.1659 2.4907 0.8873 38 1 3.8666 1.5579 -1.9861 39 1 6.3200 1.5717 -1.7860 40 1 7.3756 1.4490 0.4351 41 1 3.0740 0.2536 2.8462 42 1 3.7958 1.7677 3.4419 43 1 2.3324 1.8171 2.4297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:00 Heat of formation + Delta-G solvation = -57.877701 kcal Electronic energy + Delta-G solvation = -25726.218415 eV Core-core repulsion = 22036.066014 eV Total energy + Delta-G solvation = -3690.152401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91494 -41.36033 -39.91237 -38.19007 -35.46231 -34.78791 -33.46057 -31.97813 -31.38427 -30.83603 -28.29531 -27.31315 -26.42727 -23.69135 -23.31481 -22.93533 -22.34028 -21.03617 -19.31567 -18.91975 -18.33419 -17.26161 -16.95036 -16.74041 -16.63912 -16.44839 -16.12568 -15.75622 -15.40186 -14.82778 -14.57680 -14.39377 -14.37054 -14.14544 -14.04873 -13.80964 -13.53034 -13.51973 -13.14282 -12.98219 -12.93834 -12.74388 -12.71795 -12.54570 -12.39917 -12.21211 -11.96073 -11.66996 -11.61867 -11.43846 -10.98458 -10.82921 -9.76458 -9.59790 -9.50268 -8.83317 -8.56773 -6.19969 0.14956 0.18092 0.96913 1.08894 1.40144 1.51344 1.54672 2.23807 2.45019 2.59171 2.75302 3.28327 3.57467 3.73751 3.75279 3.83234 3.98288 4.06770 4.10840 4.29972 4.37110 4.40660 4.45644 4.56930 4.64406 4.67051 4.77389 4.84692 4.90016 4.96709 5.02208 5.04016 5.15469 5.17494 5.19158 5.20256 5.37655 5.40494 5.43313 5.46816 5.61114 5.71615 5.92294 6.01906 6.09901 6.27510 6.59389 6.83129 6.98636 7.13459 8.39307 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.003208 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.379444 B = 8725.558498 C = 9111.288772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.118 3.882 4 H 0.080 0.920 5 O -0.318 6.318 6 C 0.013 3.987 7 C -0.123 4.123 8 C -0.205 4.205 9 C 0.055 3.945 10 C -0.500 4.500 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.834 5.834 14 Si 0.978 3.022 15 H -0.259 1.259 16 H -0.265 1.265 17 H -0.268 1.268 18 C -0.150 4.150 19 C -0.170 4.170 20 C -0.072 4.072 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.148 4.148 24 C 0.077 3.923 25 F -0.143 7.143 26 C -0.119 4.119 27 C -0.122 4.122 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.285 0.715 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.778 -10.299 1.528 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.062 3.938 4 H 0.098 0.902 5 O -0.233 6.233 6 C -0.031 4.031 7 C -0.142 4.142 8 C -0.224 4.224 9 C 0.053 3.947 10 C -0.531 4.531 11 H 0.091 0.909 12 C -0.178 4.178 13 N -0.461 5.461 14 Si 0.800 3.200 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.193 1.193 18 C -0.170 4.170 19 C -0.189 4.189 20 C -0.072 4.072 21 C -0.129 4.129 22 C -0.111 4.111 23 C -0.166 4.166 24 C 0.058 3.942 25 F -0.122 7.122 26 C -0.120 4.120 27 C -0.179 4.179 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.180 0.820 40 H 0.177 0.823 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.945 -10.235 1.650 16.585 hybrid contribution -0.847 0.622 0.584 1.203 sum 12.098 -9.613 2.234 15.613 Atomic orbital electron populations 1.21854 0.95401 1.02085 1.01623 1.21898 0.96198 0.94320 1.03653 1.21243 0.90617 0.94393 0.87547 0.90216 1.85827 1.39368 1.63462 1.34693 1.18556 0.89541 1.00628 0.94331 1.19854 0.97569 1.00772 0.96017 1.20764 0.97062 1.06197 0.98418 1.17919 0.93200 0.91683 0.91915 1.19723 1.07656 1.29161 0.96512 0.90886 1.26656 1.02794 0.93939 0.94441 1.69892 1.36878 1.34186 1.05132 0.85214 0.77190 0.78268 0.79362 1.18286 1.18992 1.19343 1.20884 0.97727 0.99359 0.99014 1.20768 0.97847 1.03777 0.96496 1.19520 0.94336 1.00485 0.92840 1.21255 0.94152 0.98647 0.98846 1.21319 0.94177 0.97694 0.97905 1.21446 1.01573 1.02506 0.91100 1.17599 0.90614 1.05296 0.80664 1.91458 1.84623 1.94019 1.42115 1.19764 0.92823 1.03370 0.96030 1.20881 0.98997 1.03860 0.94116 0.91010 0.93115 0.94064 0.89067 0.90805 0.86312 0.87574 0.90421 0.87796 0.86471 0.84881 0.81964 0.82325 0.88957 0.90723 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 8.49 71.98 0.61 -3.77 16 2 C -0.12 -3.19 5.62 30.60 0.17 -3.02 16 3 C 0.12 3.61 1.87 29.85 0.06 3.66 16 4 H 0.08 2.60 3.29 -2.39 -0.01 2.60 16 5 O -0.32 -11.78 8.48 -89.93 -0.76 -12.54 16 6 C 0.01 0.57 5.36 22.79 0.12 0.69 16 7 C -0.12 -5.51 9.92 22.11 0.22 -5.29 16 8 C -0.20 -10.03 9.74 22.48 0.22 -9.82 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.84 16 10 C -0.50 -27.08 9.04 23.40 0.21 -26.86 16 11 H 0.07 3.83 7.90 -2.92 -0.02 3.81 16 12 C 0.04 1.77 5.15 85.24 0.44 2.21 16 13 N -0.83 -43.78 10.95 21.82 0.24 -43.54 16 14 Si 0.98 38.52 29.59 68.60 2.03 40.55 16 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 18 C -0.15 -7.78 8.64 22.49 0.19 -7.59 16 19 C -0.17 -7.66 7.21 22.11 0.16 -7.50 16 20 C -0.07 -1.96 5.06 -19.87 -0.10 -2.06 16 21 C -0.11 -2.76 9.35 22.27 0.21 -2.55 16 22 C -0.09 -1.81 10.04 22.26 0.22 -1.58 16 23 C -0.15 -2.90 10.03 22.31 0.22 -2.68 16 24 C 0.08 1.84 7.24 22.37 0.16 2.01 16 25 F -0.14 -3.47 16.48 44.97 0.74 -2.73 16 26 C -0.12 -3.02 5.89 -19.82 -0.12 -3.14 16 27 C -0.12 -2.75 9.22 71.24 0.66 -2.09 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.50 6.91 -2.38 -0.02 1.48 16 30 H 0.04 1.43 6.37 -2.39 -0.02 1.41 16 31 H 0.09 1.96 7.93 -2.39 -0.02 1.94 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 34 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.29 13.56 8.30 -92.70 -0.77 12.79 16 36 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 37 H 0.12 4.69 4.62 -2.91 -0.01 4.68 16 38 H 0.13 3.38 7.36 -2.91 -0.02 3.36 16 39 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.60 7.64 -2.39 -0.02 1.58 16 43 H 0.07 1.66 6.03 -2.39 -0.01 1.65 16 Total: -1.00 -59.79 349.45 6.82 -52.97 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 1.03 Total: 31.83 kcal Atomic # 6 Polarization: -70.09 SS G_CDS: 3.54 Total: -66.55 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.24 Total: -43.54 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.76 Total: -12.54 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.74 Total: -2.73 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -59.79 6.82 -52.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.907 kcal (2) G-P(sol) polarization free energy of solvation -59.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds