Wall clock time and date at job start Tue Mar 31 2020 10:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46753 * 2 1 4 4 C 1.53008 * 109.46922 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46841 * 179.97438 * 4 3 2 6 6 C 1.35860 * 116.99618 * 179.97438 * 5 4 3 7 7 C 1.38567 * 120.12011 * 0.03863 * 6 5 4 8 8 C 1.38192 * 120.06674 * 179.97438 * 7 6 5 9 9 C 1.38381 * 120.30071 * 0.02562 * 8 7 6 10 10 C 1.38015 * 120.23440 * 359.97438 * 9 8 7 11 11 C 1.39296 * 119.93150 * 0.02562 * 10 9 8 12 12 C 1.48346 * 120.14589 * 180.02562 * 11 10 9 13 13 C 1.39603 * 120.01684 * 64.72441 * 12 11 10 14 14 C 1.38467 * 120.41621 * 179.74184 * 13 12 11 15 15 C 1.37656 * 120.45201 * 0.55637 * 14 13 12 16 16 C 1.40752 * 120.02564 * 359.69974 * 15 14 13 17 17 C 1.41321 * 120.20941 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99962 * 204.64994 * 17 16 15 19 19 C 1.39928 * 119.99923 * 24.65562 * 17 16 15 20 20 N 1.30847 * 120.00043 * 17.80249 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 197.80950 * 19 17 16 22 22 H 1.48499 * 109.47354 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47337 * 119.99812 * 21 19 17 24 24 H 1.48496 * 109.47046 * 239.99656 * 21 19 17 25 25 C 1.39090 * 120.01461 * 244.99692 * 12 11 10 26 26 F 1.35095 * 120.22489 * 0.02562 * 25 12 11 27 27 H 1.09004 * 109.47466 * 300.00001 * 1 2 3 28 28 H 1.09001 * 109.47694 * 60.00350 * 1 2 3 29 29 H 1.09005 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47290 * 240.00006 * 2 1 3 31 31 H 1.08996 * 109.47280 * 119.99429 * 2 1 3 32 32 H 1.09000 * 109.47697 * 60.00254 * 3 2 1 33 33 H 1.09000 * 109.47221 * 299.99641 * 3 2 1 34 34 H 1.08990 * 109.47287 * 59.99905 * 4 3 2 35 35 H 1.09000 * 109.46799 * 299.99800 * 4 3 2 36 36 H 1.08005 * 119.96634 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.85039 * 180.28618 * 8 7 6 38 38 H 1.08000 * 119.88468 * 179.97438 * 9 8 7 39 39 H 1.08005 * 120.03276 * 180.02562 * 10 9 8 40 40 H 1.08002 * 119.79354 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.77519 * 180.25645 * 14 13 12 42 42 H 1.08006 * 119.98709 * 179.72245 * 15 14 13 43 43 H 0.97001 * 119.99795 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.3930 2.9679 -0.0013 7 6 6.2395 1.8708 -0.0016 8 6 7.6093 2.0531 -0.0023 9 6 8.1437 3.3296 -0.0020 10 6 7.3122 4.4311 -0.0017 11 6 5.9300 4.2586 -0.0011 12 6 5.0318 5.4392 -0.0013 13 6 5.0193 6.3070 -1.0948 14 6 4.1804 7.4085 -1.1061 15 6 3.3562 7.6687 -0.0347 16 6 3.3574 6.8092 1.0799 17 6 2.5132 7.0730 2.1822 18 1 2.7689 6.6945 3.1610 19 6 1.3461 7.8244 2.0056 20 7 0.8480 7.9872 0.8066 21 14 0.4992 8.5951 3.4814 22 1 1.2563 8.2642 4.7153 23 1 0.4507 10.0695 3.3102 24 1 -0.8831 8.0639 3.5920 25 6 4.2058 5.6853 1.0904 26 9 4.2181 4.8523 2.1539 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8908 35 1 3.9336 0.9286 0.8891 36 1 5.8282 0.8721 -0.0014 37 1 8.2657 1.1956 -0.0072 38 1 9.2153 3.4643 -0.0021 39 1 7.7328 5.4259 -0.0020 40 1 5.6653 6.1159 -1.9390 41 1 4.1761 8.0708 -1.9592 42 1 2.7080 8.5326 -0.0495 43 1 0.0388 8.5078 0.6842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241020385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:54 Heat of formation + Delta-G solvation = -62.518912 kcal Electronic energy + Delta-G solvation = -25830.870732 eV Core-core repulsion = 22140.517073 eV Total energy + Delta-G solvation = -3690.353659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -47.11217 -39.80808 -37.53904 -36.84894 -34.98210 -33.87577 -31.64674 -30.06299 -29.58711 -28.98315 -27.59251 -25.29160 -24.07969 -22.69548 -21.56616 -21.09968 -20.61273 -20.12236 -17.86763 -17.12174 -16.16584 -15.96876 -15.65490 -15.33808 -15.18518 -14.65647 -14.39095 -14.23877 -13.93519 -13.81992 -13.53129 -13.14601 -12.81831 -12.75413 -12.71489 -12.11407 -11.83800 -11.71958 -11.65715 -11.46559 -11.26731 -11.10554 -11.08110 -11.04909 -10.85361 -10.69146 -10.53238 -10.39136 -10.36439 -9.80534 -9.50568 -9.24038 -8.57196 -7.86408 -7.42609 -7.14040 -6.79485 -4.37663 1.60249 1.79528 2.69211 2.79510 3.06735 3.12845 3.15694 3.51703 3.91943 4.11974 4.54262 4.89741 4.90487 5.04101 5.09316 5.16842 5.24595 5.33347 5.37846 5.50240 5.55814 5.67184 5.73510 5.75535 5.79322 5.83505 5.95146 6.03554 6.11851 6.23725 6.24455 6.32052 6.37063 6.60454 6.63800 6.69909 6.83910 6.91859 7.12080 7.13268 7.22213 7.52637 7.65064 7.85530 7.95389 8.01298 8.11936 8.55505 8.76184 8.86406 10.14022 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.005229 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.725308 B = 5353.109805 C = 7341.800204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.061 3.939 5 O -0.292 6.292 6 C 0.145 3.855 7 C -0.216 4.216 8 C -0.093 4.093 9 C -0.164 4.164 10 C -0.073 4.073 11 C -0.050 4.050 12 C -0.057 4.057 13 C -0.201 4.201 14 C -0.113 4.113 15 C -0.145 4.145 16 C 0.084 3.916 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.077 3.923 20 N -0.791 5.791 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.007 3.993 26 F -0.157 7.157 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 -10.785 -2.659 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.015 4.015 5 O -0.204 6.204 6 C 0.099 3.901 7 C -0.235 4.235 8 C -0.111 4.111 9 C -0.182 4.182 10 C -0.091 4.091 11 C -0.051 4.051 12 C -0.058 4.058 13 C -0.220 4.220 14 C -0.132 4.132 15 C -0.164 4.164 16 C 0.081 3.919 17 C -0.483 4.483 18 H 0.099 0.901 19 C -0.141 4.141 20 N -0.416 5.416 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.014 4.014 26 F -0.136 7.136 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.143 0.857 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.062 -10.578 -2.733 11.656 hybrid contribution -0.386 -0.078 0.702 0.805 sum 3.675 -10.656 -2.031 11.454 Atomic orbital electron populations 1.21750 0.95315 1.01435 1.02415 1.21408 0.96369 0.95889 1.01910 1.21570 0.92658 0.97219 1.04455 1.22766 0.95560 0.82634 1.00532 1.86265 1.18539 1.27881 1.87743 1.19070 0.82596 0.93244 0.95144 1.21091 0.94397 0.97549 1.10456 1.20812 0.94085 0.97033 0.99164 1.20891 0.99363 0.92440 1.05494 1.21080 0.91422 0.99042 0.97534 1.18294 0.92952 0.90544 1.03309 1.18060 0.97850 0.94710 0.95189 1.20192 1.05370 0.98572 0.97896 1.20619 0.97354 0.97195 0.98006 1.21204 1.00689 1.00456 0.94061 1.17548 0.91056 0.89080 0.94229 1.19499 1.04344 1.28542 0.95934 0.90052 1.25874 0.96807 0.94331 0.97065 1.69834 1.18200 1.30378 1.23195 0.86238 0.79112 0.79278 0.82039 1.18288 1.19583 1.19908 1.17780 1.05490 0.92358 0.85727 1.91268 1.96113 1.70950 1.55285 0.92378 0.92485 0.92790 0.92017 0.91924 0.90350 0.90685 0.92681 0.92533 0.85986 0.86457 0.86315 0.85426 0.88620 0.88696 0.85737 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.25 5.93 -26.73 -0.16 -1.40 16 3 C -0.12 -1.69 5.58 -26.73 -0.15 -1.84 16 4 C 0.06 0.90 4.74 37.16 0.18 1.08 16 5 O -0.29 -5.86 9.33 -19.30 -0.18 -6.04 16 6 C 0.15 2.82 6.48 -38.88 -0.25 2.56 16 7 C -0.22 -3.39 9.03 -39.48 -0.36 -3.75 16 8 C -0.09 -1.30 10.03 -39.55 -0.40 -1.70 16 9 C -0.16 -2.38 10.03 -39.61 -0.40 -2.78 16 10 C -0.07 -1.26 9.73 -39.27 -0.38 -1.65 16 11 C -0.05 -1.04 5.01 -104.76 -0.52 -1.56 16 12 C -0.06 -1.35 4.94 -104.91 -0.52 -1.87 16 13 C -0.20 -4.53 9.73 -38.99 -0.38 -4.91 16 14 C -0.11 -2.62 10.01 -39.71 -0.40 -3.01 16 15 C -0.14 -3.73 8.69 -38.84 -0.34 -4.06 16 16 C 0.08 2.30 5.57 -106.80 -0.60 1.70 16 17 C -0.45 -12.39 8.78 -37.78 -0.33 -12.72 16 18 H 0.08 2.22 7.74 -52.48 -0.41 1.81 16 19 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 20 N -0.79 -20.31 10.96 55.55 0.61 -19.70 16 21 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C 0.01 0.18 6.95 -38.29 -0.27 -0.09 16 26 F -0.16 -4.18 16.10 2.25 0.04 -4.15 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 35 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 36 H 0.12 1.60 6.30 -52.48 -0.33 1.27 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.26 6.16 -52.48 -0.32 2.94 16 43 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -29.47 364.69 -10.12 -39.60 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.06 Total: 6.29 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -4.99 Total: -35.29 kcal Atomic # 7 Polarization: -20.31 SS G_CDS: 0.61 Total: -19.70 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.18 Total: -6.04 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.47 -10.12 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241020385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.923 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds