Wall clock time and date at job start Tue Mar 31 2020 10:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46869 * 2 1 4 4 C 1.53005 * 109.46943 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47189 * 180.02562 * 4 3 2 6 6 C 1.35780 * 117.00074 * 179.97438 * 5 4 3 7 7 C 1.38528 * 120.12794 * 0.02562 * 6 5 4 8 8 C 1.38237 * 120.14552 * 179.97438 * 7 6 5 9 9 C 1.38431 * 120.41090 * 359.97438 * 8 7 6 10 10 C 1.38132 * 120.25654 * 0.02562 * 9 8 7 11 11 F 1.35096 * 120.08000 * 180.02562 * 10 9 8 12 12 C 1.39897 * 119.84223 * 359.74218 * 10 9 8 13 13 C 1.47680 * 120.20048 * 180.27297 * 12 10 9 14 14 C 1.39275 * 120.34704 * 269.93585 * 13 12 10 15 15 C 1.38010 * 119.97508 * 179.72338 * 14 13 12 16 16 C 1.38976 * 120.68649 * 0.55469 * 15 14 13 17 17 C 1.36403 * 120.70647 * 359.72889 * 16 15 14 18 18 C 1.40755 * 119.99584 * 359.97438 * 17 16 15 19 19 C 1.40827 * 120.34130 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00288 * 149.86068 * 19 18 17 21 21 C 1.40047 * 119.99825 * 329.86201 * 19 18 17 22 22 N 1.30794 * 119.99664 * 161.97189 * 21 19 18 23 23 Si 1.86794 * 119.99720 * 341.97480 * 21 19 18 24 24 H 1.48499 * 109.47251 * 95.39800 * 23 21 19 25 25 H 1.48505 * 109.46912 * 215.39249 * 23 21 19 26 26 H 1.48495 * 109.47418 * 335.39129 * 23 21 19 27 27 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46812 * 299.99619 * 1 2 3 29 29 H 1.08997 * 109.47227 * 59.99596 * 1 2 3 30 30 H 1.09004 * 109.46812 * 240.00381 * 2 1 3 31 31 H 1.08997 * 109.47227 * 120.00404 * 2 1 3 32 32 H 1.08997 * 109.47430 * 60.00512 * 3 2 1 33 33 H 1.09003 * 109.47607 * 299.99791 * 3 2 1 34 34 H 1.09004 * 109.47049 * 60.00190 * 4 3 2 35 35 H 1.08997 * 109.46917 * 300.00259 * 4 3 2 36 36 H 1.07994 * 119.92470 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.79200 * 179.97438 * 8 7 6 38 38 H 1.08004 * 119.87586 * 180.02562 * 9 8 7 39 39 H 1.07994 * 120.01200 * 359.97438 * 14 13 12 40 40 H 1.07997 * 119.65818 * 180.25968 * 15 14 13 41 41 H 1.08002 * 119.64826 * 179.74236 * 16 15 14 42 42 H 1.08002 * 120.00188 * 180.02562 * 17 16 15 43 43 H 0.97006 * 119.99881 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3924 2.9677 0.0000 7 6 6.2387 1.8710 -0.0010 8 6 7.6092 2.0517 -0.0014 9 6 8.1479 3.3269 -0.0014 10 6 7.3196 4.4324 -0.0004 11 9 7.8491 5.6752 -0.0009 12 6 5.9310 4.2618 -0.0048 13 6 5.0381 5.4381 -0.0099 14 6 4.6075 5.9998 1.1896 15 6 3.7777 7.1025 1.1760 16 6 3.3542 7.6566 -0.0261 17 6 3.7542 7.1255 -1.2171 18 6 4.6054 6.0046 -1.2373 19 6 5.0233 5.4507 -2.4628 20 1 5.9838 4.9623 -2.5351 21 6 4.1933 5.5334 -3.5878 22 7 4.6920 5.3513 -4.7832 23 14 2.3741 5.9036 -3.3811 24 1 2.1427 7.3603 -3.5535 25 1 1.5975 5.1549 -4.4018 26 1 1.9358 5.4899 -2.0240 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 5.8269 0.8727 -0.0014 37 1 8.2638 1.1927 -0.0018 38 1 9.2199 3.4581 -0.0022 39 1 4.9261 5.5751 2.1301 40 1 3.4503 7.5364 2.1092 41 1 2.7015 8.5170 -0.0172 42 1 3.4185 7.5654 -2.1446 43 1 4.1171 5.4082 -5.5624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243274234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:56 Heat of formation + Delta-G solvation = -57.153620 kcal Electronic energy + Delta-G solvation = -26313.094874 eV Core-core repulsion = 22622.973871 eV Total energy + Delta-G solvation = -3690.121003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.17894 -39.71870 -37.75189 -36.81420 -34.99286 -33.58331 -31.88567 -30.34397 -29.77196 -29.00220 -27.96836 -25.09569 -24.03155 -22.69582 -21.52692 -21.28335 -20.96581 -19.79608 -17.90939 -17.35307 -16.18825 -16.17565 -16.15118 -15.42870 -15.17833 -14.99172 -14.49871 -14.28507 -14.20477 -13.82099 -13.66718 -13.51707 -12.85385 -12.64518 -12.55866 -12.43697 -12.05984 -11.98871 -11.67561 -11.50470 -11.38927 -11.25364 -11.13900 -10.82569 -10.80702 -10.79235 -10.51657 -10.35877 -10.23167 -9.80849 -9.54137 -9.15176 -8.09825 -7.69122 -7.61845 -7.51266 -6.93079 -4.44097 1.65121 1.80063 2.57081 2.75325 3.13201 3.22069 3.36151 3.45842 4.01349 4.07334 4.53734 4.80115 4.85528 4.92875 5.02641 5.17639 5.22212 5.26810 5.33764 5.43684 5.52443 5.62798 5.69638 5.74379 5.75999 5.77689 5.94015 6.04712 6.05753 6.15428 6.18649 6.29563 6.37600 6.43725 6.62650 6.65475 6.74101 6.77807 6.95136 7.22048 7.24870 7.42552 7.66636 7.75634 7.90333 7.94373 8.16111 8.38930 8.71140 8.83004 10.08834 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.006868 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.015025 B = 4076.113324 C = 5458.651106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.121 4.121 4 C 0.058 3.942 5 O -0.289 6.289 6 C 0.169 3.831 7 C -0.228 4.228 8 C -0.069 4.069 9 C -0.198 4.198 10 C 0.139 3.861 11 F -0.131 7.131 12 C -0.047 4.047 13 C -0.159 4.159 14 C -0.053 4.053 15 C -0.247 4.247 16 C -0.073 4.073 17 C -0.233 4.233 18 C 0.117 3.883 19 C -0.434 4.434 20 H 0.089 0.911 21 C 0.087 3.913 22 N -0.805 5.805 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.240 1.240 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 -9.987 7.794 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.159 4.159 4 C -0.018 4.018 5 O -0.201 6.201 6 C 0.123 3.877 7 C -0.247 4.247 8 C -0.087 4.087 9 C -0.217 4.217 10 C 0.119 3.881 11 F -0.109 7.109 12 C -0.049 4.049 13 C -0.160 4.160 14 C -0.071 4.071 15 C -0.266 4.266 16 C -0.092 4.092 17 C -0.252 4.252 18 C 0.114 3.886 19 C -0.462 4.462 20 H 0.107 0.893 21 C -0.132 4.132 22 N -0.429 5.429 23 Si 0.733 3.267 24 H -0.197 1.197 25 H -0.219 1.219 26 H -0.163 1.163 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.456 -9.845 7.490 12.612 hybrid contribution -0.506 0.170 -0.265 0.596 sum -2.962 -9.675 7.225 12.433 Atomic orbital electron populations 1.21751 0.95408 1.01514 1.02227 1.21421 0.96265 0.95909 1.02122 1.21570 0.92901 0.97280 1.04144 1.22796 0.95339 0.82753 1.00874 1.86191 1.18537 1.27738 1.87662 1.18780 0.82526 0.92381 0.94034 1.21096 0.94268 0.97755 1.11535 1.20568 0.94142 0.96088 0.97901 1.20828 0.99730 0.91730 1.09435 1.17564 0.90463 0.79576 1.00487 1.91481 1.86215 1.39717 1.93475 1.17940 0.90819 0.91965 1.04137 1.18113 1.07094 0.97591 0.93216 1.20577 0.96154 0.95036 0.95377 1.20212 1.08217 1.02028 0.96186 1.20373 0.97844 0.97860 0.93099 1.20722 1.07739 1.00215 0.96498 1.17577 0.89287 0.89693 0.92071 1.19338 1.04469 1.31180 0.91253 0.89313 1.26162 1.01703 0.91184 0.94172 1.69694 1.38364 1.35629 0.99202 0.86385 0.81746 0.78586 0.79985 1.19703 1.21924 1.16287 0.92724 0.92581 0.92463 0.91758 0.91898 0.90784 0.90548 0.92200 0.92515 0.85644 0.85641 0.85392 0.89029 0.88908 0.89033 0.88255 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.57 5.58 -26.73 -0.15 -1.72 16 4 C 0.06 0.83 4.74 37.16 0.18 1.01 16 5 O -0.29 -5.68 9.59 -19.05 -0.18 -5.86 16 6 C 0.17 3.36 6.70 -38.75 -0.26 3.10 16 7 C -0.23 -3.68 9.03 -39.47 -0.36 -4.04 16 8 C -0.07 -1.03 10.03 -39.51 -0.40 -1.43 16 9 C -0.20 -3.35 10.01 -39.55 -0.40 -3.74 16 10 C 0.14 2.87 7.28 -39.00 -0.28 2.58 16 11 F -0.13 -2.86 16.83 2.25 0.04 -2.82 16 12 C -0.05 -1.04 4.13 -104.69 -0.43 -1.48 16 13 C -0.16 -3.86 4.55 -104.24 -0.47 -4.34 16 14 C -0.05 -1.20 9.78 -39.28 -0.38 -1.58 16 15 C -0.25 -5.38 10.03 -39.39 -0.40 -5.77 16 16 C -0.07 -1.66 9.96 -39.97 -0.40 -2.06 16 17 C -0.23 -5.82 7.11 -39.29 -0.28 -6.10 16 18 C 0.12 3.07 5.12 -106.55 -0.55 2.53 16 19 C -0.43 -12.06 8.94 -37.93 -0.34 -12.40 16 20 H 0.09 2.64 7.55 -52.49 -0.40 2.24 16 21 C 0.09 2.33 5.41 -17.32 -0.09 2.24 16 22 N -0.81 -21.80 13.93 55.55 0.77 -21.02 16 23 Si 0.91 21.31 24.52 -169.99 -4.17 17.14 16 24 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.24 -5.81 6.86 56.52 0.39 -5.43 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 36 H 0.13 1.64 6.29 -52.49 -0.33 1.31 16 37 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.10 2.47 4.76 -52.49 -0.25 2.22 16 43 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -29.80 359.30 -8.94 -38.73 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.02 Total: 3.97 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: -4.80 Total: -35.55 kcal Atomic # 7 Polarization: -21.80 SS G_CDS: 0.77 Total: -21.02 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.18 Total: -5.86 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.17 Total: 17.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.80 -8.94 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243274234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.419 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds