Wall clock time and date at job start Tue Mar 31 2020 10:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47601 * 2 1 4 4 C 1.53003 * 109.47585 * 120.00533 * 2 1 3 5 5 O 1.42902 * 109.47114 * 64.99261 * 4 2 1 6 6 C 1.35868 * 116.99814 * 180.02562 * 5 4 2 7 7 C 1.38835 * 119.93336 * 179.97438 * 6 5 4 8 8 C 1.37912 * 120.06120 * 180.02562 * 7 6 5 9 9 C 1.39362 * 119.93915 * 0.02562 * 8 7 6 10 10 C 1.48387 * 120.06845 * 180.02562 * 9 8 7 11 11 C 1.39710 * 119.98400 * 359.97438 * 10 9 8 12 12 C 1.38619 * 120.34827 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.83322 * 180.02562 * 12 11 10 14 14 C 1.37938 * 120.32858 * 359.97438 * 12 11 10 15 15 C 1.40720 * 119.96879 * 0.02562 * 14 12 11 16 16 C 1.41425 * 120.17335 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00363 * 204.47668 * 16 15 14 18 18 C 1.39931 * 119.99962 * 24.48045 * 16 15 14 19 19 N 1.30834 * 119.99789 * 17.86515 * 18 16 15 20 20 Si 1.86794 * 120.00008 * 197.86834 * 18 16 15 21 21 H 1.48497 * 109.47430 * 94.68942 * 20 18 16 22 22 H 1.48509 * 109.46817 * 214.68791 * 20 18 16 23 23 H 1.48499 * 109.47111 * 334.68493 * 20 18 16 24 24 C 1.38748 * 119.98969 * 180.02562 * 10 9 8 25 25 C 1.39374 * 119.87257 * 0.27154 * 9 8 7 26 26 C 1.37914 * 119.92903 * 359.45376 * 25 9 8 27 27 H 1.08995 * 109.47209 * 59.99424 * 1 2 3 28 28 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46802 * 299.99401 * 1 2 3 30 30 H 1.09009 * 109.46804 * 240.00051 * 2 1 3 31 31 H 1.08995 * 109.47735 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46938 * 300.00381 * 3 2 1 33 33 H 1.09002 * 109.46893 * 59.99820 * 3 2 1 34 34 H 1.09008 * 109.46730 * 305.00087 * 4 2 1 35 35 H 1.08998 * 109.47712 * 184.99704 * 4 2 1 36 36 H 1.07995 * 119.97011 * 0.02562 * 7 6 5 37 37 H 1.07999 * 120.03127 * 180.02562 * 8 7 6 38 38 H 1.07998 * 119.82372 * 0.02882 * 11 10 9 39 39 H 1.08002 * 120.01690 * 179.74387 * 14 12 11 40 40 H 0.97002 * 119.99690 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.16628 * 359.96730 * 24 10 9 42 42 H 1.07993 * 120.03875 * 179.71966 * 25 9 8 43 43 H 1.08005 * 119.96396 * 180.25343 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0397 -2.8854 2.2329 7 6 1.7041 -4.2326 2.2402 8 6 2.0856 -5.0339 3.2958 9 6 2.8083 -4.4900 4.3561 10 6 3.2208 -5.3497 5.4931 11 6 2.8841 -6.7056 5.5013 12 6 3.2652 -7.5155 6.5598 13 9 2.9345 -8.8254 6.5568 14 6 3.9811 -6.9908 7.6156 15 6 4.3275 -5.6269 7.6214 16 6 5.0610 -5.0843 8.7019 17 1 4.9956 -4.0293 8.9234 18 6 5.8718 -5.9144 9.4841 19 7 6.2336 -7.0882 9.0336 20 14 6.4373 -5.3466 11.1714 21 1 5.5067 -5.8652 12.2059 22 1 7.8055 -5.8610 11.4338 23 1 6.4496 -3.8623 11.2158 24 6 3.9398 -4.8064 6.5481 25 6 3.1384 -3.1360 4.3490 26 6 2.7590 -2.3408 3.2880 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6054 -0.2619 2.1370 35 1 3.1264 -0.6445 1.2951 36 1 1.1437 -4.6534 1.4185 37 1 1.8247 -6.0818 3.3008 38 1 2.3241 -7.1250 4.6785 39 1 4.2718 -7.6255 8.4397 40 1 6.7953 -7.6638 9.5759 41 1 4.2010 -3.7585 6.5442 42 1 3.6944 -2.7108 5.1714 43 1 3.0181 -1.2923 3.2800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243436533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:20 Heat of formation + Delta-G solvation = -75.838335 kcal Electronic energy + Delta-G solvation = -24397.648610 eV Core-core repulsion = 20706.717377 eV Total energy + Delta-G solvation = -3690.931233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.59086 -41.19006 -39.69953 -38.26745 -36.22800 -35.51593 -32.58026 -32.31302 -31.29253 -29.15001 -28.03469 -27.48643 -27.30749 -24.18985 -23.88063 -22.24067 -21.85063 -20.97725 -19.47998 -19.11312 -17.83576 -17.26501 -16.96296 -16.85743 -16.63723 -16.26763 -16.21647 -15.93668 -15.29565 -15.14879 -14.87647 -14.75383 -14.27858 -14.11849 -13.96365 -13.70472 -13.53622 -13.38316 -13.05613 -12.95875 -12.87605 -12.69381 -12.58747 -12.27498 -12.04941 -12.00049 -11.96528 -11.78419 -11.55540 -11.51953 -11.34195 -11.08588 -9.98560 -9.88627 -9.41543 -8.73567 -8.48812 -6.47396 -0.00205 0.41709 0.77311 1.19346 1.38882 1.52458 1.53290 2.17844 2.23035 2.54525 2.96117 3.60698 3.61983 3.78012 3.87465 3.91507 3.95657 4.08257 4.14886 4.33111 4.34077 4.48470 4.54844 4.55660 4.66296 4.70662 4.75965 4.82412 4.87630 5.00584 5.02690 5.03551 5.09932 5.20974 5.23030 5.28000 5.34505 5.40110 5.42685 5.51212 5.65843 5.71525 5.80240 5.93542 5.97893 6.25275 6.48106 6.54342 6.81854 6.84378 8.24960 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002648 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.900663 B =10572.402006 C =11927.175406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.053 3.947 5 O -0.321 6.321 6 C 0.122 3.878 7 C -0.155 4.155 8 C -0.076 4.076 9 C -0.087 4.087 10 C 0.004 3.996 11 C -0.268 4.268 12 C 0.095 3.905 13 F -0.166 7.166 14 C -0.228 4.228 15 C 0.103 3.897 16 C -0.486 4.486 17 H 0.089 0.911 18 C 0.033 3.967 19 N -0.821 5.821 20 Si 0.987 3.013 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.251 1.251 24 C -0.226 4.226 25 C -0.077 4.077 26 C -0.204 4.204 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.291 0.709 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 13.962 -13.410 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.021 4.021 5 O -0.235 6.235 6 C 0.076 3.924 7 C -0.173 4.173 8 C -0.094 4.094 9 C -0.087 4.087 10 C 0.004 3.996 11 C -0.288 4.288 12 C 0.076 3.924 13 F -0.145 7.145 14 C -0.249 4.249 15 C 0.100 3.900 16 C -0.514 4.514 17 H 0.108 0.892 18 C -0.183 4.183 19 N -0.446 5.446 20 Si 0.807 3.193 21 H -0.189 1.189 22 H -0.193 1.193 23 H -0.175 1.175 24 C -0.246 4.246 25 C -0.095 4.095 26 C -0.222 4.222 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.149 0.851 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.545 13.676 -13.550 20.334 hybrid contribution 0.523 -0.610 1.100 1.362 sum -6.022 13.065 -12.450 19.026 Atomic orbital electron populations 1.21818 0.94386 1.01796 1.02384 1.21146 0.96935 0.96575 0.96439 1.21773 1.01525 0.93587 1.03164 1.23178 1.00224 0.78450 1.00280 1.86015 1.74358 1.21995 1.41143 1.19130 0.94723 0.91075 0.87447 1.20502 1.05146 0.91064 1.00614 1.21202 0.95834 1.00324 0.92068 1.18884 1.01311 0.93725 0.94799 1.18332 0.96037 0.91877 0.93383 1.20568 1.13464 0.94020 1.00742 1.17762 0.99999 0.77058 0.97539 1.91327 1.91380 1.34761 1.96990 1.21258 1.05861 0.98244 0.99511 1.17644 0.89458 0.90786 0.92072 1.19903 1.23183 0.96950 1.11360 0.89247 1.26900 0.94114 0.94113 1.03193 1.69890 1.26406 1.10254 1.38006 0.85112 0.78001 0.80128 0.76050 1.18869 1.19308 1.17468 1.21323 1.08172 0.99908 0.95154 1.21216 0.97704 0.92475 0.98117 1.21327 1.04344 1.01511 0.95052 0.91351 0.93336 0.92504 0.90441 0.91924 0.90788 0.91917 0.91364 0.91318 0.83501 0.84449 0.85354 0.87307 0.89847 0.86462 0.85071 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.09 71.98 0.65 -1.32 16 2 C -0.09 -1.23 3.16 -10.80 -0.03 -1.27 16 3 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 4 C 0.05 0.90 4.12 71.98 0.30 1.20 16 5 O -0.32 -7.47 9.67 -92.07 -0.89 -8.36 16 6 C 0.12 3.24 6.69 22.55 0.15 3.39 16 7 C -0.15 -4.24 9.97 22.34 0.22 -4.02 16 8 C -0.08 -2.41 9.42 22.46 0.21 -2.20 16 9 C -0.09 -3.16 5.88 -20.03 -0.12 -3.28 16 10 C 0.00 0.18 5.87 -20.10 -0.12 0.06 16 11 C -0.27 -12.16 9.41 22.72 0.21 -11.94 16 12 C 0.10 4.83 7.28 22.29 0.16 4.99 16 13 F -0.17 -8.03 17.26 44.97 0.78 -7.26 16 14 C -0.23 -12.48 8.66 22.81 0.20 -12.29 16 15 C 0.10 5.51 5.57 -21.32 -0.12 5.39 16 16 C -0.49 -25.28 9.05 23.47 0.21 -25.07 16 17 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 18 C 0.03 1.62 5.13 85.25 0.44 2.06 16 19 N -0.82 -42.91 10.96 21.82 0.24 -42.67 16 20 Si 0.99 37.07 29.59 68.60 2.03 39.10 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 24 C -0.23 -10.77 9.16 22.96 0.21 -10.56 16 25 C -0.08 -2.47 9.42 22.47 0.21 -2.26 16 26 C -0.20 -5.40 9.02 22.33 0.20 -5.20 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.80 7.82 -2.38 -0.02 0.78 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.07 1.07 7.65 -2.38 -0.02 1.05 16 35 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 4.04 6.18 -2.91 -0.02 4.02 16 38 H 0.13 5.05 6.18 -2.91 -0.02 5.04 16 39 H 0.11 6.27 6.16 -2.91 -0.02 6.25 16 40 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 41 H 0.12 5.07 6.18 -2.91 -0.02 5.05 16 42 H 0.13 4.08 6.19 -2.91 -0.02 4.06 16 43 H 0.15 3.08 6.28 -2.91 -0.02 3.06 16 Total: -1.00 -60.17 358.30 6.84 -53.34 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 1.03 Total: 28.85 kcal Atomic # 6 Polarization: -66.66 SS G_CDS: 3.66 Total: -63.00 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.24 Total: -42.67 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.89 Total: -8.36 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.78 Total: -7.26 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -60.17 6.84 -53.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243436533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.501 kcal (2) G-P(sol) polarization free energy of solvation -60.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds