Wall clock time and date at job start Tue Mar 31 2020 10:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47124 * 120.00439 * 2 1 3 5 5 O 1.42899 * 109.46939 * 174.99771 * 4 2 1 6 6 C 1.35789 * 116.99814 * 180.02562 * 5 4 2 7 7 C 1.38565 * 120.13681 * 0.02562 * 6 5 4 8 8 C 1.38189 * 120.07976 * 179.97438 * 7 6 5 9 9 C 1.38494 * 120.36635 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.27722 * 0.02562 * 9 8 7 11 11 C 1.39601 * 119.90485 * 359.97438 * 10 9 8 12 12 C 1.47874 * 120.17776 * 180.02562 * 11 10 9 13 13 C 1.40084 * 119.86434 * 309.99976 * 12 11 10 14 14 C 1.36168 * 120.17893 * 179.97438 * 13 12 11 15 15 C 1.40959 * 119.90175 * 359.97438 * 14 13 12 16 16 C 1.40921 * 120.12902 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00050 * 204.82500 * 16 15 14 18 18 C 1.39977 * 120.00334 * 24.82234 * 16 15 14 19 19 N 1.30836 * 119.99565 * 17.87269 * 18 16 15 20 20 Si 1.86794 * 120.00522 * 197.87616 * 18 16 15 21 21 H 1.48504 * 109.47271 * 59.99597 * 20 18 16 22 22 H 1.48492 * 109.47730 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46785 * 300.00175 * 20 18 16 24 24 C 1.41190 * 119.74060 * 359.97438 * 15 14 13 25 25 F 1.35099 * 120.08887 * 180.02562 * 24 15 14 26 26 C 1.36531 * 119.81927 * 359.77205 * 24 15 14 27 27 H 1.08998 * 109.46544 * 299.99813 * 1 2 3 28 28 H 1.09000 * 109.47251 * 59.99902 * 1 2 3 29 29 H 1.08999 * 109.46745 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46544 * 240.00187 * 2 1 3 31 31 H 1.08994 * 109.46865 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47595 * 300.00429 * 3 2 1 33 33 H 1.09003 * 109.47041 * 60.00179 * 3 2 1 34 34 H 1.09001 * 109.47425 * 54.99943 * 4 2 1 35 35 H 1.08999 * 109.46982 * 294.99743 * 4 2 1 36 36 H 1.07993 * 119.95701 * 0.02562 * 7 6 5 37 37 H 1.08006 * 119.81376 * 180.28541 * 8 7 6 38 38 H 1.07998 * 119.86435 * 179.97438 * 9 8 7 39 39 H 1.07993 * 120.04585 * 180.02562 * 10 9 8 40 40 H 1.07999 * 119.90925 * 359.97438 * 13 12 11 41 41 H 1.07999 * 120.04963 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99817 * 180.02562 * 19 18 16 43 43 H 1.07999 * 119.95636 * 180.25292 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0800 -1.4429 2.2318 7 6 3.3320 -1.9424 3.2858 8 6 3.9598 -2.5726 4.3433 9 6 5.3379 -2.7094 4.3585 10 6 6.0969 -2.2171 3.3179 11 6 5.4745 -1.5784 2.2439 12 6 6.2826 -1.0486 1.1245 13 6 7.3907 -0.2334 1.3888 14 6 8.1396 0.2575 0.3629 15 6 7.7990 -0.0561 -0.9685 16 6 8.5710 0.4489 -2.0338 17 1 8.1297 0.5654 -3.0126 18 6 9.9097 0.7996 -1.8234 19 7 10.5462 0.3498 -0.7725 20 14 10.7873 1.9097 -3.0427 21 1 10.0826 3.2146 -3.1203 22 1 12.1863 2.1280 -2.5955 23 1 10.7906 1.2686 -4.3822 24 6 6.6820 -0.8789 -1.2305 25 9 6.3495 -1.1843 -2.5038 26 6 5.9418 -1.3694 -0.1933 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6055 -1.7199 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 2.2570 -1.8397 3.2805 37 1 3.3722 -2.9644 5.1604 38 1 5.8202 -3.2030 5.1892 39 1 7.1712 -2.3261 3.3334 40 1 7.6518 0.0064 2.4089 41 1 8.9932 0.8861 0.5690 42 1 11.4738 0.5931 -0.6265 43 1 5.0894 -2.0023 -0.3910 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244056287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:27 Heat of formation + Delta-G solvation = -63.068432 kcal Electronic energy + Delta-G solvation = -25671.141264 eV Core-core repulsion = 21980.763776 eV Total energy + Delta-G solvation = -3690.377488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.18495 -39.88856 -37.72603 -36.92142 -35.07812 -34.00367 -31.44889 -29.77217 -29.09323 -28.74441 -27.15290 -26.47010 -25.21532 -22.41630 -21.98987 -20.79803 -20.43565 -19.79535 -17.79635 -17.45543 -16.33367 -15.93730 -15.61607 -15.32938 -14.74361 -14.49810 -14.29308 -14.15525 -14.10620 -13.94809 -13.68167 -13.00117 -12.90538 -12.61903 -12.40582 -12.37233 -12.14583 -11.91417 -11.76373 -11.42008 -11.24666 -11.17668 -11.11480 -11.04068 -10.90840 -10.71094 -10.51262 -10.50096 -10.31929 -9.87130 -9.55699 -9.34591 -8.54862 -7.91283 -7.45199 -7.18891 -6.90939 -4.43684 1.59841 1.80997 2.66206 2.92364 3.00475 3.03496 3.12986 3.49747 3.83271 4.14674 4.50599 4.76767 4.81631 5.06729 5.12531 5.16856 5.34058 5.37337 5.41170 5.50344 5.53424 5.66222 5.72018 5.80570 5.82141 5.89006 6.02067 6.05620 6.07801 6.23641 6.28937 6.29922 6.44343 6.51505 6.66727 6.73400 6.87517 6.93523 7.04055 7.16768 7.23027 7.51497 7.57082 7.88205 7.94952 7.99192 8.06007 8.47217 8.63823 8.80592 9.99846 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.004212 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.587563 B = 6645.868290 C = 8199.513607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.063 3.937 5 O -0.294 6.294 6 C 0.123 3.877 7 C -0.211 4.211 8 C -0.107 4.107 9 C -0.156 4.156 10 C -0.089 4.089 11 C -0.020 4.020 12 C -0.169 4.169 13 C -0.083 4.083 14 C -0.155 4.155 15 C 0.094 3.906 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.076 3.924 19 N -0.780 5.780 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.034 4.034 25 F -0.165 7.165 26 C -0.078 4.078 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.285 0.715 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.008 -0.913 6.524 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.013 4.013 5 O -0.207 6.207 6 C 0.077 3.923 7 C -0.229 4.229 8 C -0.125 4.125 9 C -0.174 4.174 10 C -0.107 4.107 11 C -0.021 4.021 12 C -0.170 4.170 13 C -0.102 4.102 14 C -0.175 4.175 15 C 0.091 3.909 16 C -0.472 4.472 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.404 5.404 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.054 4.054 25 F -0.145 7.145 26 C -0.098 4.098 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.096 0.904 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.691 -0.836 6.400 13.354 hybrid contribution 0.174 0.235 -0.450 0.536 sum -11.517 -0.601 5.950 12.977 Atomic orbital electron populations 1.21775 0.94280 1.01838 1.02212 1.21100 0.95237 0.97303 0.97716 1.21803 1.02806 0.94628 1.01151 1.22824 0.80013 0.99664 0.98760 1.86202 1.20189 1.73251 1.41081 1.19157 0.91893 0.93896 0.87337 1.21054 0.99358 1.06157 0.96375 1.20766 0.94616 0.99515 0.97625 1.20895 0.93840 1.03368 0.99329 1.21176 0.99921 0.96710 0.92906 1.18326 0.89092 0.99029 0.95605 1.17582 1.00156 1.09145 0.90162 1.20480 0.94286 0.97735 0.97652 1.20786 1.01539 1.03970 0.91156 1.17678 0.89975 0.89177 0.94104 1.19539 0.94890 1.35406 0.97403 0.89795 1.25975 0.97761 0.94497 0.96171 1.69814 1.11385 1.33326 1.25843 0.86260 0.78072 0.80983 0.80934 1.18544 1.20098 1.18732 1.17396 1.03112 1.07206 0.77695 1.91269 1.92576 1.92532 1.38095 1.20144 0.98080 0.99974 0.91565 0.92590 0.91866 0.92602 0.89945 0.91137 0.92714 0.93103 0.92665 0.92579 0.86330 0.86767 0.86596 0.85531 0.88802 0.85745 0.90361 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.10 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.15 -1.86 9.09 37.16 0.34 -1.53 16 4 C 0.06 0.82 4.12 37.16 0.15 0.98 16 5 O -0.29 -5.16 8.03 -19.08 -0.15 -5.31 16 6 C 0.12 2.17 6.60 -38.76 -0.26 1.92 16 7 C -0.21 -3.11 9.03 -39.48 -0.36 -3.47 16 8 C -0.11 -1.46 10.03 -39.51 -0.40 -1.86 16 9 C -0.16 -2.24 10.03 -39.62 -0.40 -2.64 16 10 C -0.09 -1.51 9.50 -39.20 -0.37 -1.88 16 11 C -0.02 -0.39 5.48 -104.74 -0.57 -0.96 16 12 C -0.17 -3.79 5.30 -104.66 -0.55 -4.34 16 13 C -0.08 -1.90 9.43 -39.63 -0.37 -2.28 16 14 C -0.16 -3.92 8.62 -39.30 -0.34 -4.26 16 15 C 0.09 2.52 5.58 -106.73 -0.60 1.92 16 16 C -0.44 -11.80 8.76 -37.92 -0.33 -12.14 16 17 H 0.08 2.21 7.73 -52.49 -0.41 1.80 16 18 C 0.08 1.86 5.13 -17.32 -0.09 1.77 16 19 N -0.78 -19.40 10.96 55.55 0.61 -18.79 16 20 Si 0.91 18.25 29.60 -169.99 -5.03 13.22 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 24 C -0.03 -0.88 7.26 -39.08 -0.28 -1.17 16 25 F -0.17 -4.28 16.70 2.25 0.04 -4.24 16 26 C -0.08 -1.86 8.68 -39.60 -0.34 -2.21 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.10 7.82 -51.93 -0.41 0.70 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.12 1.46 6.30 -52.49 -0.33 1.12 16 37 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.13 2.07 8.04 -52.49 -0.42 1.64 16 40 H 0.09 1.94 8.03 -52.49 -0.42 1.51 16 41 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 42 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 43 H 0.10 2.25 7.69 -52.49 -0.40 1.85 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -27.85 361.94 -9.82 -37.68 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.03 Total: 6.52 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: -4.72 Total: -34.52 kcal Atomic # 7 Polarization: -19.40 SS G_CDS: 0.61 Total: -18.79 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.15 Total: -5.31 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.04 Total: -4.24 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.85 -9.82 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244056287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.392 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds