Wall clock time and date at job start Tue Mar 31 2020 10:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47124 * 120.00439 * 2 1 3 5 5 O 1.42899 * 109.46939 * 174.99771 * 4 2 1 6 6 C 1.35789 * 116.99814 * 180.02562 * 5 4 2 7 7 C 1.38565 * 120.13681 * 0.02562 * 6 5 4 8 8 C 1.38189 * 120.07976 * 179.97438 * 7 6 5 9 9 C 1.38494 * 120.36635 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.27722 * 0.02562 * 9 8 7 11 11 C 1.39601 * 119.90485 * 359.97438 * 10 9 8 12 12 C 1.47874 * 120.17776 * 180.02562 * 11 10 9 13 13 C 1.40084 * 119.86434 * 309.99976 * 12 11 10 14 14 C 1.36168 * 120.17893 * 179.97438 * 13 12 11 15 15 C 1.40959 * 119.90175 * 359.97438 * 14 13 12 16 16 C 1.40921 * 120.12902 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00050 * 204.82500 * 16 15 14 18 18 C 1.39977 * 120.00334 * 24.82234 * 16 15 14 19 19 N 1.30836 * 119.99565 * 17.87269 * 18 16 15 20 20 Si 1.86794 * 120.00522 * 197.87616 * 18 16 15 21 21 H 1.48504 * 109.47271 * 59.99597 * 20 18 16 22 22 H 1.48492 * 109.47730 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46785 * 300.00175 * 20 18 16 24 24 C 1.41190 * 119.74060 * 359.97438 * 15 14 13 25 25 F 1.35099 * 120.08887 * 180.02562 * 24 15 14 26 26 C 1.36531 * 119.81927 * 359.77205 * 24 15 14 27 27 H 1.08998 * 109.46544 * 299.99813 * 1 2 3 28 28 H 1.09000 * 109.47251 * 59.99902 * 1 2 3 29 29 H 1.08999 * 109.46745 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46544 * 240.00187 * 2 1 3 31 31 H 1.08994 * 109.46865 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47595 * 300.00429 * 3 2 1 33 33 H 1.09003 * 109.47041 * 60.00179 * 3 2 1 34 34 H 1.09001 * 109.47425 * 54.99943 * 4 2 1 35 35 H 1.08999 * 109.46982 * 294.99743 * 4 2 1 36 36 H 1.07993 * 119.95701 * 0.02562 * 7 6 5 37 37 H 1.08006 * 119.81376 * 180.28541 * 8 7 6 38 38 H 1.07998 * 119.86435 * 179.97438 * 9 8 7 39 39 H 1.07993 * 120.04585 * 180.02562 * 10 9 8 40 40 H 1.07999 * 119.90925 * 359.97438 * 13 12 11 41 41 H 1.07999 * 120.04963 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99817 * 180.02562 * 19 18 16 43 43 H 1.07999 * 119.95636 * 180.25292 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0800 -1.4429 2.2318 7 6 3.3320 -1.9424 3.2858 8 6 3.9598 -2.5726 4.3433 9 6 5.3379 -2.7094 4.3585 10 6 6.0969 -2.2171 3.3179 11 6 5.4745 -1.5784 2.2439 12 6 6.2826 -1.0486 1.1245 13 6 7.3907 -0.2334 1.3888 14 6 8.1396 0.2575 0.3629 15 6 7.7990 -0.0561 -0.9685 16 6 8.5710 0.4489 -2.0338 17 1 8.1297 0.5654 -3.0126 18 6 9.9097 0.7996 -1.8234 19 7 10.5462 0.3498 -0.7725 20 14 10.7873 1.9097 -3.0427 21 1 10.0826 3.2146 -3.1203 22 1 12.1863 2.1280 -2.5955 23 1 10.7906 1.2686 -4.3822 24 6 6.6820 -0.8789 -1.2305 25 9 6.3495 -1.1843 -2.5038 26 6 5.9418 -1.3694 -0.1933 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6055 -1.7199 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 2.2570 -1.8397 3.2805 37 1 3.3722 -2.9644 5.1604 38 1 5.8202 -3.2030 5.1892 39 1 7.1712 -2.3261 3.3334 40 1 7.6518 0.0064 2.4089 41 1 8.9932 0.8861 0.5690 42 1 11.4738 0.5931 -0.6265 43 1 5.0894 -2.0023 -0.3910 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244056287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:26 Heat of formation + Delta-G solvation = -74.270833 kcal Electronic energy + Delta-G solvation = -25671.627037 eV Core-core repulsion = 21980.763776 eV Total energy + Delta-G solvation = -3690.863261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.23093 -41.15257 -39.30751 -38.35252 -36.09722 -35.82068 -33.02703 -31.23176 -30.83372 -30.33455 -28.07057 -27.52610 -26.93638 -23.95078 -23.42695 -22.42014 -21.96276 -20.96159 -19.38662 -19.04191 -17.91125 -17.26159 -17.10011 -16.79185 -16.27836 -16.23277 -15.98320 -15.82782 -15.31309 -15.28486 -14.83457 -14.53705 -14.39746 -14.04494 -13.82080 -13.61254 -13.44607 -13.38312 -13.08952 -12.96493 -12.81776 -12.67467 -12.36483 -12.25007 -12.15165 -12.03325 -11.94212 -11.76275 -11.60584 -11.52865 -11.27403 -11.14700 -9.95412 -9.42055 -9.33053 -8.83388 -8.71894 -6.40620 0.24683 0.58873 0.88890 1.01663 1.35637 1.47164 1.51501 2.16546 2.37686 2.58314 2.95903 3.51099 3.79041 3.85763 3.88390 4.06298 4.12625 4.12759 4.25301 4.32959 4.38249 4.49020 4.54642 4.59280 4.60685 4.69311 4.75667 4.84143 4.95641 4.98183 5.00122 5.09082 5.13821 5.19229 5.23785 5.34699 5.39531 5.43677 5.56717 5.58492 5.66901 5.76185 5.97866 6.01267 6.10674 6.14171 6.51241 6.66889 6.70883 6.86010 8.19573 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.004212 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.587563 B = 6645.868290 C = 8199.513607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.057 3.943 5 O -0.326 6.326 6 C 0.112 3.888 7 C -0.209 4.209 8 C -0.089 4.089 9 C -0.155 4.155 10 C -0.093 4.093 11 C -0.068 4.068 12 C -0.148 4.148 13 C -0.087 4.087 14 C -0.167 4.167 15 C 0.064 3.936 16 C -0.488 4.488 17 H 0.071 0.929 18 C 0.040 3.960 19 N -0.807 5.807 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.258 1.258 23 H -0.262 1.262 24 C -0.064 4.064 25 F -0.173 7.173 26 C -0.083 4.083 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.296 0.704 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.863 -1.386 9.106 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.018 4.018 5 O -0.239 6.239 6 C 0.067 3.933 7 C -0.228 4.228 8 C -0.107 4.107 9 C -0.173 4.173 10 C -0.111 4.111 11 C -0.069 4.069 12 C -0.150 4.150 13 C -0.105 4.105 14 C -0.186 4.186 15 C 0.061 3.939 16 C -0.516 4.516 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.432 5.432 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.181 1.181 23 H -0.187 1.187 24 C -0.084 4.084 25 F -0.152 7.152 26 C -0.102 4.102 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.563 -1.324 9.000 16.332 hybrid contribution 0.551 0.261 -1.030 1.197 sum -13.012 -1.062 7.970 15.296 Atomic orbital electron populations 1.21725 0.91366 1.02943 1.03254 1.21141 0.97508 0.96159 0.96624 1.21774 1.00151 0.95860 1.02387 1.23105 0.77944 1.00979 0.99723 1.86177 1.22661 1.73419 1.41690 1.19324 0.91515 0.94195 0.88287 1.21401 1.00735 1.05209 0.95427 1.21310 0.94616 0.97015 0.97767 1.21258 0.94349 1.02517 0.99131 1.21281 1.00248 0.96631 0.92960 1.18325 0.90069 1.02526 0.95943 1.17952 0.99329 1.06826 0.90846 1.20747 0.94240 0.97302 0.98209 1.20793 1.01934 1.04553 0.91320 1.17987 0.90775 0.90104 0.95053 1.19664 0.96476 1.38374 0.97044 0.91084 1.26777 0.97555 0.95185 0.98174 1.69827 1.12165 1.33916 1.27261 0.85191 0.77449 0.78584 0.78193 1.18283 1.18128 1.18655 1.17726 1.04178 1.08512 0.77985 1.91223 1.92671 1.92677 1.38665 1.20278 0.98038 1.00021 0.91865 0.91164 0.91231 0.91470 0.92091 0.95149 0.91778 0.91591 0.90976 0.90930 0.83458 0.82626 0.83356 0.85738 0.86470 0.86544 0.89315 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.99 0.66 -1.45 16 2 C -0.10 -2.24 3.16 -10.79 -0.03 -2.27 16 3 C -0.14 -3.70 9.09 71.98 0.65 -3.05 16 4 C 0.06 1.40 4.12 71.98 0.30 1.69 16 5 O -0.33 -11.39 8.03 -91.19 -0.73 -12.12 16 6 C 0.11 3.83 6.60 22.80 0.15 3.98 16 7 C -0.21 -5.38 9.03 22.34 0.20 -5.18 16 8 C -0.09 -1.99 10.03 22.32 0.22 -1.76 16 9 C -0.15 -3.83 10.03 22.25 0.22 -3.60 16 10 C -0.09 -3.01 9.50 22.51 0.21 -2.79 16 11 C -0.07 -2.61 5.48 -19.94 -0.11 -2.72 16 12 C -0.15 -6.84 5.30 -19.89 -0.11 -6.95 16 13 C -0.09 -4.11 9.43 22.24 0.21 -3.90 16 14 C -0.17 -8.87 8.62 22.45 0.19 -8.68 16 15 C 0.06 3.65 5.58 -21.23 -0.12 3.53 16 16 C -0.49 -27.56 8.76 23.35 0.20 -27.36 16 17 H 0.07 4.02 7.73 -2.91 -0.02 4.00 16 18 C 0.04 2.05 5.13 85.26 0.44 2.49 16 19 N -0.81 -41.48 10.96 21.83 0.24 -41.24 16 20 Si 0.99 38.30 29.60 68.60 2.03 40.33 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 22 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 C -0.06 -3.55 7.26 22.60 0.16 -3.39 16 25 F -0.17 -9.59 16.70 44.97 0.75 -8.84 16 26 C -0.08 -4.15 8.68 22.26 0.19 -3.95 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.00 7.82 -2.39 -0.02 0.98 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 35 H 0.07 1.52 7.67 -2.39 -0.02 1.50 16 36 H 0.15 2.89 6.30 -2.91 -0.02 2.87 16 37 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.12 3.95 8.04 -2.91 -0.02 3.93 16 40 H 0.12 4.89 8.03 -2.91 -0.02 4.87 16 41 H 0.12 6.28 6.17 -2.91 -0.02 6.26 16 42 H 0.30 13.50 8.30 -92.71 -0.77 12.73 16 43 H 0.11 5.00 7.69 -2.91 -0.02 4.97 16 Total: -1.00 -65.29 361.94 6.95 -58.33 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 1.00 Total: 28.90 kcal Atomic # 6 Polarization: -69.02 SS G_CDS: 3.66 Total: -65.36 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.24 Total: -41.24 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.73 Total: -12.12 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 0.75 Total: -8.84 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -65.29 6.95 -58.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244056287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.940 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds