Wall clock time and date at job start Tue Mar 31 2020 10:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47243 * 2 1 4 4 C 1.52994 * 109.47362 * 120.00120 * 2 1 3 5 5 O 1.42901 * 109.47071 * 64.99820 * 4 2 1 6 6 C 1.35792 * 116.99575 * 180.02562 * 5 4 2 7 7 C 1.38549 * 120.14319 * 359.97438 * 6 5 4 8 8 C 1.38201 * 120.08925 * 180.02562 * 7 6 5 9 9 C 1.38501 * 120.37013 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.27880 * 359.96846 * 9 8 7 11 11 C 1.39635 * 119.90647 * 0.02733 * 10 9 8 12 12 C 1.47761 * 120.18333 * 180.02562 * 11 10 9 13 13 C 1.39134 * 120.26919 * 64.72382 * 12 11 10 14 14 C 1.38085 * 120.17504 * 179.76894 * 13 12 11 15 15 C 1.38851 * 120.72231 * 0.50955 * 14 13 12 16 16 C 1.37705 * 120.53244 * 359.74327 * 15 14 13 17 17 F 1.35102 * 120.09399 * 179.97438 * 16 15 14 18 18 C 1.41034 * 119.80589 * 0.02562 * 16 15 14 19 19 C 1.40768 * 120.35052 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99931 * 209.08046 * 19 18 16 21 21 C 1.40048 * 120.00403 * 29.07611 * 19 18 16 22 22 N 1.30806 * 120.00478 * 213.40599 * 21 19 18 23 23 Si 1.86807 * 119.99628 * 33.40200 * 21 19 18 24 24 H 1.48497 * 109.47071 * 95.43975 * 23 21 19 25 25 H 1.48501 * 109.46998 * 215.43740 * 23 21 19 26 26 H 1.48498 * 109.47038 * 335.44167 * 23 21 19 27 27 H 1.09009 * 109.46791 * 59.99911 * 1 2 3 28 28 H 1.08992 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46996 * 300.00056 * 1 2 3 30 30 H 1.09005 * 109.47316 * 240.00256 * 2 1 3 31 31 H 1.08998 * 109.47387 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47056 * 300.00229 * 3 2 1 33 33 H 1.08996 * 109.47198 * 59.99527 * 3 2 1 34 34 H 1.09007 * 109.46743 * 304.99859 * 4 2 1 35 35 H 1.08996 * 109.47488 * 185.00439 * 4 2 1 36 36 H 1.08001 * 119.95497 * 0.05108 * 7 6 5 37 37 H 1.07991 * 119.81432 * 180.27896 * 8 7 6 38 38 H 1.07998 * 119.86007 * 179.97438 * 9 8 7 39 39 H 1.08001 * 120.04576 * 180.02562 * 10 9 8 40 40 H 1.08005 * 119.91081 * 359.97438 * 13 12 11 41 41 H 1.08003 * 119.64127 * 180.23567 * 14 13 12 42 42 H 1.08002 * 119.73051 * 179.76644 * 15 14 13 43 43 H 0.96999 * 120.00131 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1919 6 6 2.0395 -2.8848 2.2324 7 6 2.7587 -2.3459 3.2869 8 6 3.1428 -3.1476 4.3450 9 6 2.8133 -4.4927 4.3600 10 6 2.0978 -5.0449 3.3187 11 6 1.7038 -4.2455 2.2438 12 6 0.9364 -4.8307 1.1249 13 6 -0.3436 -5.3325 1.3390 14 6 -1.0609 -5.8746 0.2910 15 6 -0.5156 -5.9372 -0.9844 16 6 0.7506 -5.4541 -1.2284 17 9 1.2726 -5.5199 -2.4728 18 6 1.5012 -4.8913 -0.1754 19 6 2.7968 -4.3944 -0.4118 20 1 3.5316 -4.4039 0.3796 21 6 3.1332 -3.8878 -1.6734 22 7 4.3495 -4.0314 -2.1329 23 14 1.8448 -3.0072 -2.7001 24 1 1.9565 -1.5422 -2.4844 25 1 2.0622 -3.3140 -4.1367 26 1 0.4914 -3.4653 -2.2953 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6054 -0.2617 2.1369 35 1 3.1263 -0.6443 1.2951 36 1 3.0193 -1.2978 3.2821 37 1 3.6994 -2.7219 5.1668 38 1 3.1180 -5.1118 5.1909 39 1 1.8425 -6.0942 3.3345 40 1 -0.7785 -5.2948 2.3269 41 1 -2.0552 -6.2582 0.4662 42 1 -1.0894 -6.3680 -1.7916 43 1 4.5825 -3.6802 -3.0066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244056411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:15 Heat of formation + Delta-G solvation = -48.348220 kcal Electronic energy + Delta-G solvation = -27142.821450 eV Core-core repulsion = 23453.082279 eV Total energy + Delta-G solvation = -3689.739172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -47.71106 -39.65446 -37.59877 -36.73713 -34.84376 -33.71949 -31.72474 -30.19467 -29.39120 -28.02795 -26.99088 -26.17890 -25.19363 -22.62079 -21.59646 -20.92288 -20.26231 -19.61464 -17.86886 -17.51728 -16.28050 -15.74477 -15.67612 -15.34051 -14.77008 -14.70959 -14.32852 -14.10639 -14.00446 -13.94577 -13.56837 -12.91319 -12.80836 -12.75928 -12.35672 -12.19286 -12.03666 -11.90212 -11.67005 -11.37017 -11.30717 -11.10247 -10.98709 -10.88515 -10.64756 -10.57426 -10.28941 -10.27782 -10.07413 -9.85758 -9.40949 -9.07777 -8.34189 -7.74494 -7.52517 -7.23624 -7.07407 -4.42442 1.82934 2.05771 2.58666 2.60726 3.18384 3.27348 3.35066 3.78749 4.06217 4.33978 4.43788 5.00382 5.05219 5.20295 5.29393 5.32719 5.42340 5.55938 5.57241 5.63910 5.72090 5.78952 5.85759 5.91271 5.96907 5.97727 6.04360 6.09920 6.18885 6.22373 6.27683 6.44584 6.54706 6.56315 6.62811 6.79102 6.88249 6.95043 7.08267 7.12216 7.33514 7.41035 7.51527 7.66883 7.77329 8.07224 8.16762 8.28135 8.62547 8.70881 9.88256 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.008348 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.761897 B = 3353.370414 C = 4719.099312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.065 3.935 5 O -0.279 6.279 6 C 0.153 3.847 7 C -0.219 4.219 8 C -0.099 4.099 9 C -0.165 4.165 10 C -0.085 4.085 11 C -0.019 4.019 12 C -0.147 4.147 13 C -0.064 4.064 14 C -0.240 4.240 15 C -0.102 4.102 16 C -0.033 4.033 17 F -0.152 7.152 18 C 0.089 3.911 19 C -0.421 4.421 20 H 0.094 0.906 21 C 0.095 3.905 22 N -0.772 5.772 23 Si 0.931 3.069 24 H -0.288 1.288 25 H -0.287 1.287 26 H -0.247 1.247 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 6.820 6.531 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.199 4.199 4 C -0.011 4.011 5 O -0.191 6.191 6 C 0.107 3.893 7 C -0.238 4.238 8 C -0.118 4.118 9 C -0.184 4.184 10 C -0.103 4.103 11 C -0.019 4.019 12 C -0.148 4.148 13 C -0.083 4.083 14 C -0.259 4.259 15 C -0.121 4.121 16 C -0.052 4.052 17 F -0.131 7.131 18 C 0.086 3.914 19 C -0.446 4.446 20 H 0.111 0.889 21 C -0.130 4.130 22 N -0.393 5.393 23 Si 0.760 3.240 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.171 1.171 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.383 6.784 6.134 9.751 hybrid contribution 0.018 0.495 -0.640 0.809 sum -3.365 7.278 5.494 9.720 Atomic orbital electron populations 1.21788 0.94572 1.02919 1.00900 1.21273 0.96957 0.95545 0.98723 1.21749 1.01063 0.95232 1.01863 1.22764 0.99121 0.81115 0.98119 1.86252 1.72911 1.19171 1.40796 1.19134 0.93453 0.90500 0.86201 1.21060 1.05880 1.00270 0.96623 1.20741 0.99674 0.93852 0.97500 1.20803 1.02799 0.95214 0.99543 1.21101 0.97269 0.99053 0.92855 1.18024 0.99716 0.89448 0.94734 1.18030 0.94480 1.09900 0.92432 1.20623 0.93622 0.96944 0.97087 1.19956 1.00354 1.12979 0.92618 1.20549 0.93728 1.00590 0.97246 1.17507 0.95392 1.11974 0.80361 1.90856 1.87218 1.94659 1.40399 1.17418 0.92150 0.92085 0.89791 1.19157 0.95434 1.33186 0.96806 0.88857 1.26407 0.96298 0.93154 0.97093 1.69816 1.21603 1.30198 1.17636 0.86080 0.83937 0.76636 0.77368 1.21738 1.21346 1.17127 0.92993 0.91347 0.93086 0.89240 0.92546 0.92127 0.92685 0.92909 0.92572 0.86414 0.86963 0.86849 0.85980 0.88501 0.88297 0.88138 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.09 37.16 0.34 -1.81 16 2 C -0.11 -1.67 3.16 -90.62 -0.29 -1.95 16 3 C -0.14 -1.71 9.19 37.16 0.34 -1.36 16 4 C 0.06 1.06 4.12 37.15 0.15 1.21 16 5 O -0.28 -5.73 8.24 -19.09 -0.16 -5.89 16 6 C 0.15 3.09 6.04 -38.75 -0.23 2.86 16 7 C -0.22 -3.76 9.03 -39.48 -0.36 -4.12 16 8 C -0.10 -1.55 10.03 -39.50 -0.40 -1.95 16 9 C -0.17 -2.64 10.03 -39.62 -0.40 -3.04 16 10 C -0.08 -1.55 9.74 -39.19 -0.38 -1.93 16 11 C -0.02 -0.39 4.41 -104.76 -0.46 -0.85 16 12 C -0.15 -3.39 4.99 -104.27 -0.52 -3.91 16 13 C -0.06 -1.36 9.71 -39.30 -0.38 -1.74 16 14 C -0.24 -4.99 10.02 -39.41 -0.40 -5.38 16 15 C -0.10 -2.29 9.99 -39.55 -0.40 -2.69 16 16 C -0.03 -0.83 5.13 -38.72 -0.20 -1.03 16 17 F -0.15 -3.95 12.23 2.25 0.03 -3.92 16 18 C 0.09 2.29 4.86 -106.48 -0.52 1.77 16 19 C -0.42 -11.28 7.64 -37.95 -0.29 -11.57 16 20 H 0.09 2.66 7.43 -52.49 -0.39 2.27 16 21 C 0.10 2.51 4.66 -17.31 -0.08 2.43 16 22 N -0.77 -20.48 13.93 55.55 0.77 -19.71 16 23 Si 0.93 22.27 24.77 -169.99 -4.21 18.06 16 24 H -0.29 -6.40 5.37 56.52 0.30 -6.09 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.25 -6.17 5.48 56.52 0.31 -5.86 16 27 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.67 6.03 -51.93 -0.31 1.35 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 35 H 0.06 0.89 7.66 -51.93 -0.40 0.50 16 36 H 0.12 1.74 6.30 -52.49 -0.33 1.41 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.29 6.92 8.30 -40.82 -0.34 6.59 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -28.26 349.20 -8.97 -37.23 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.21 Total: 4.05 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: -4.46 Total: -35.08 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.77 Total: -19.71 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.16 Total: -5.89 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.03 Total: -3.92 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.21 Total: 18.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.26 -8.97 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244056411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.118 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds