Wall clock time and date at job start Tue Mar 31 2020 10:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 C 1.52998 * 109.46830 * 119.99984 * 2 1 3 5 5 O 1.42901 * 109.46963 * 65.00387 * 4 2 1 6 6 C 1.35908 * 116.99413 * 179.97438 * 5 4 2 7 7 C 1.38833 * 119.99977 * 359.72409 * 6 5 4 8 8 C 1.38205 * 120.18804 * 179.76387 * 7 6 5 9 9 C 1.38066 * 120.18141 * 0.51067 * 8 7 6 10 10 C 1.39347 * 119.98944 * 359.74397 * 9 8 7 11 11 C 1.48390 * 120.09645 * 180.02562 * 10 9 8 12 12 C 1.38668 * 120.01140 * 309.70750 * 11 10 9 13 13 C 1.40551 * 119.65425 * 179.72998 * 12 11 10 14 14 C 1.41336 * 120.15921 * 180.29026 * 13 12 11 15 15 H 1.08007 * 119.99898 * 334.86734 * 14 13 12 16 16 C 1.39901 * 120.00307 * 154.86341 * 14 13 12 17 17 N 1.30861 * 119.99776 * 342.94651 * 16 14 13 18 18 Si 1.86797 * 120.00069 * 162.94895 * 16 14 13 19 19 H 1.48498 * 109.47182 * 60.00336 * 18 16 14 20 20 H 1.48503 * 109.46947 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47230 * 299.99921 * 18 16 14 22 22 C 1.40856 * 119.68575 * 0.51607 * 13 12 11 23 23 C 1.37552 * 120.02100 * 359.75424 * 22 13 12 24 24 C 1.38766 * 120.34957 * 359.97438 * 23 22 13 25 25 F 1.35102 * 119.83897 * 180.02562 * 24 23 22 26 26 C 1.38504 * 119.99017 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.47200 * 60.00226 * 1 2 3 28 28 H 1.09001 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47272 * 300.00262 * 1 2 3 30 30 H 1.09003 * 109.47062 * 240.00417 * 2 1 3 31 31 H 1.08999 * 109.46841 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46952 * 299.99925 * 3 2 1 33 33 H 1.08997 * 109.47314 * 59.99764 * 3 2 1 34 34 H 1.09003 * 109.46650 * 184.99836 * 4 2 1 35 35 H 1.08997 * 109.47501 * 304.99873 * 4 2 1 36 36 H 1.07997 * 119.90156 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.90926 * 180.24976 * 8 7 6 38 38 H 1.07996 * 120.00630 * 179.72072 * 9 8 7 39 39 H 1.08004 * 120.17723 * 359.96668 * 12 11 10 40 40 H 0.96994 * 120.00123 * 179.97438 * 17 16 14 41 41 H 1.07996 * 119.98287 * 179.73345 * 22 13 12 42 42 H 1.07994 * 119.82260 * 179.97438 * 23 22 13 43 43 H 1.07994 * 120.09411 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6620 -2.0982 1.1919 6 6 2.0406 -2.8857 2.2329 7 6 2.7665 -2.3439 3.2850 8 6 3.1493 -3.1401 4.3479 9 6 2.8210 -4.4810 4.3642 10 6 2.0972 -5.0338 3.3095 11 6 1.7427 -6.4746 3.3249 12 6 2.7203 -7.4269 3.5704 13 6 2.3750 -8.7892 3.5889 14 6 3.3618 -9.7684 3.8441 15 1 4.3991 -9.5587 3.6285 16 6 2.9948 -11.0092 4.3760 17 7 1.8253 -11.1575 4.9441 18 14 4.1743 -12.4542 4.2755 19 1 5.4328 -12.1165 4.9879 20 1 3.5527 -13.6455 4.9076 21 1 4.4754 -12.7492 2.8516 22 6 1.0419 -9.1743 3.3470 23 6 0.0837 -8.2190 3.0993 24 6 0.4222 -6.8733 3.0864 25 9 -0.5273 -5.9437 2.8425 26 6 1.7066 -4.2298 2.2414 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1263 -0.6443 1.2951 35 1 1.6054 -0.2618 2.1370 36 1 3.0290 -1.2964 3.2749 37 1 3.7104 -2.7130 5.1659 38 1 3.1255 -5.1015 5.1940 39 1 3.7410 -7.1232 3.7503 40 1 1.5708 -12.0179 5.3126 41 1 0.7722 -10.2200 3.3558 42 1 -0.9373 -8.5179 2.9139 43 1 1.1451 -4.6535 1.4219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244194699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:49 Heat of formation + Delta-G solvation = -65.359485 kcal Electronic energy + Delta-G solvation = -24792.225212 eV Core-core repulsion = 21101.748377 eV Total energy + Delta-G solvation = -3690.476836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.50727 -39.95749 -38.05320 -36.94110 -35.32087 -33.73439 -31.59840 -30.07934 -29.65246 -27.97587 -27.39315 -26.60576 -25.11487 -22.75533 -22.22264 -20.76991 -20.66509 -20.03424 -18.08207 -16.84201 -16.32991 -16.13399 -15.82110 -15.56236 -15.38225 -14.66960 -14.52678 -14.33340 -14.27343 -13.80987 -13.49065 -13.20722 -12.97355 -12.73123 -12.52920 -12.45564 -12.27928 -11.98986 -11.95239 -11.50657 -11.38785 -11.31101 -11.23716 -11.16920 -11.04461 -10.87824 -10.67141 -10.61955 -10.32897 -9.99551 -9.57454 -9.27343 -8.66487 -7.95244 -7.59724 -7.25708 -6.89175 -4.47206 1.50846 1.79508 2.59002 2.74800 3.01410 3.02974 3.09075 3.26637 3.84538 4.13040 4.44788 4.53799 4.58817 4.83295 5.03899 5.09682 5.19071 5.21460 5.32193 5.39384 5.42898 5.51047 5.58871 5.66133 5.68264 5.72831 5.78202 5.83753 5.91132 6.04265 6.09628 6.11272 6.31350 6.56516 6.69099 6.73058 6.80101 6.86431 7.00906 7.07024 7.14997 7.35185 7.58351 7.65368 7.75297 7.85811 8.06521 8.43086 8.71690 8.75445 10.06123 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.002693 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.093570 B =10396.068397 C =10887.774103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.065 3.935 5 O -0.315 6.315 6 C 0.125 3.875 7 C -0.221 4.221 8 C -0.085 4.085 9 C -0.144 4.144 10 C 0.022 3.978 11 C -0.064 4.064 12 C -0.182 4.182 13 C 0.102 3.898 14 C -0.457 4.457 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.792 5.792 18 Si 0.911 3.089 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.024 4.024 25 F -0.167 7.167 26 C -0.136 4.136 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.284 0.716 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 15.912 -4.661 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.229 6.229 6 C 0.080 3.920 7 C -0.240 4.240 8 C -0.103 4.103 9 C -0.162 4.162 10 C 0.022 3.978 11 C -0.065 4.065 12 C -0.202 4.202 13 C 0.099 3.901 14 C -0.486 4.486 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.417 5.417 18 Si 0.736 3.264 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.044 4.044 25 F -0.146 7.146 26 C -0.154 4.154 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.897 15.722 -4.705 16.435 hybrid contribution 0.399 -0.407 0.256 0.625 sum 1.297 15.315 -4.449 16.001 Atomic orbital electron populations 1.21820 0.94327 1.02805 1.01507 1.21126 0.97035 0.95648 0.97611 1.21779 1.01143 0.94958 1.02369 1.22830 0.99262 0.80177 0.98828 1.86044 1.74573 1.20374 1.41876 1.18822 0.95312 0.90619 0.87230 1.21097 1.06061 1.00279 0.96585 1.20786 0.98668 0.93600 0.97252 1.21201 1.00937 0.94947 0.99165 1.18707 0.93965 0.92698 0.92454 1.18288 0.92605 0.90587 1.04978 1.20923 0.97163 0.92016 1.10053 1.17573 0.92812 0.91089 0.88632 1.19528 0.95274 0.96973 1.36800 0.90078 1.25933 0.95839 1.00118 0.92459 1.69798 1.20527 1.25957 1.25395 0.86306 0.80784 0.79568 0.79780 1.18905 1.20267 1.18703 1.21292 0.93006 0.98719 1.02400 1.20647 0.99264 0.91189 1.03825 1.17260 0.85052 0.85699 1.16400 1.91301 1.64069 1.65851 1.93378 1.20488 1.04168 0.90376 1.00395 0.92633 0.91607 0.92780 0.90084 0.92406 0.91819 0.92397 0.92300 0.92257 0.86220 0.86132 0.85582 0.87633 0.90528 0.85457 0.87839 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.09 37.16 0.34 -1.02 16 2 C -0.10 -0.86 3.16 -90.62 -0.29 -1.15 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C 0.06 0.70 4.12 37.16 0.15 0.85 16 5 O -0.31 -4.70 9.67 -19.45 -0.19 -4.89 16 6 C 0.12 2.07 6.68 -39.26 -0.26 1.81 16 7 C -0.22 -3.24 9.03 -39.37 -0.36 -3.59 16 8 C -0.08 -1.27 10.03 -39.66 -0.40 -1.66 16 9 C -0.14 -2.55 9.50 -39.23 -0.37 -2.93 16 10 C 0.02 0.44 5.31 -104.92 -0.56 -0.12 16 11 C -0.06 -1.45 5.47 -104.91 -0.57 -2.03 16 12 C -0.18 -4.30 9.24 -38.55 -0.36 -4.66 16 13 C 0.10 2.58 5.56 -106.86 -0.59 1.99 16 14 C -0.46 -11.47 9.04 -37.78 -0.34 -11.82 16 15 H 0.08 1.95 7.90 -52.48 -0.41 1.53 16 16 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 17 N -0.79 -19.52 10.96 55.54 0.61 -18.91 16 18 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.13 -3.37 8.68 -38.84 -0.34 -3.70 16 23 C -0.13 -3.06 9.99 -39.64 -0.40 -3.45 16 24 C -0.02 -0.57 7.18 -38.73 -0.28 -0.85 16 25 F -0.17 -3.81 15.86 2.25 0.04 -3.78 16 26 C -0.14 -2.59 8.79 -39.10 -0.34 -2.93 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.58 7.64 -51.93 -0.40 0.19 16 35 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 36 H 0.12 1.40 6.28 -52.49 -0.33 1.07 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.13 2.16 8.04 -52.49 -0.42 1.74 16 39 H 0.11 2.34 8.04 -52.48 -0.42 1.92 16 40 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 41 H 0.13 3.23 6.18 -52.49 -0.32 2.90 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.13 2.52 7.78 -52.49 -0.41 2.11 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -26.97 363.23 -9.85 -36.82 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.04 Total: 6.67 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -4.71 Total: -34.18 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.61 Total: -18.91 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.19 Total: -4.89 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.97 -9.85 -36.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244194699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.540 kcal (2) G-P(sol) polarization free energy of solvation -26.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds