Wall clock time and date at job start Tue Mar 31 2020 11:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 O 1.42903 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.35778 * 116.99992 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.12557 * 0.21910 * 5 4 3 7 7 C 1.38435 * 120.06344 * 180.27172 * 6 5 4 8 8 F 1.35101 * 119.84380 * 179.75886 * 7 6 5 9 9 C 1.38775 * 120.30963 * 359.74367 * 7 6 5 10 10 C 1.37796 * 120.25553 * 0.02562 * 9 7 6 11 11 C 1.39659 * 119.92976 * 359.97438 * 10 9 7 12 12 C 1.47800 * 120.15198 * 179.97438 * 11 10 9 13 13 C 1.40051 * 119.89306 * 64.73423 * 12 11 10 14 14 C 1.36175 * 120.11505 * 179.71324 * 13 12 11 15 15 C 1.40978 * 119.88703 * 0.57506 * 14 13 12 16 16 C 1.40983 * 120.11324 * 179.71915 * 15 14 13 17 17 H 1.07996 * 120.00048 * 150.07938 * 16 15 14 18 18 C 1.39969 * 119.99714 * 330.07775 * 16 15 14 19 19 N 1.30829 * 119.99750 * 161.73486 * 18 16 15 20 20 Si 1.86801 * 120.00188 * 341.73284 * 18 16 15 21 21 H 1.48501 * 109.47080 * 95.41796 * 20 18 16 22 22 H 1.48499 * 109.47045 * 215.41868 * 20 18 16 23 23 H 1.48503 * 109.47087 * 335.41627 * 20 18 16 24 24 C 1.40947 * 119.77818 * 359.69656 * 15 14 13 25 25 C 1.36211 * 119.88416 * 0.02562 * 24 15 14 26 26 C 1.50696 * 119.94256 * 180.02562 * 25 24 15 27 27 H 1.09007 * 109.47745 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47309 * 300.00432 * 1 2 3 29 29 H 1.09006 * 109.47243 * 59.99974 * 1 2 3 30 30 H 1.09000 * 109.46948 * 239.99331 * 2 1 3 31 31 H 1.09002 * 109.46631 * 120.00420 * 2 1 3 32 32 H 1.09003 * 109.46952 * 59.99947 * 3 2 1 33 33 H 1.08994 * 109.47367 * 299.99581 * 3 2 1 34 34 H 1.08004 * 119.97275 * 0.02562 * 6 5 4 35 35 H 1.08009 * 119.87204 * 179.97438 * 9 7 6 36 36 H 1.08002 * 120.03729 * 179.97438 * 10 9 7 37 37 H 1.08001 * 119.94072 * 359.96537 * 13 12 11 38 38 H 1.08008 * 120.05503 * 180.27270 * 14 13 12 39 39 H 0.97002 * 119.99504 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.05739 * 180.02562 * 24 15 14 41 41 H 1.09001 * 109.47162 * 270.02114 * 26 25 24 42 42 H 1.08997 * 109.47099 * 30.01749 * 26 25 24 43 43 H 1.08998 * 109.47451 * 150.01954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0855 2.6522 0.0001 6 6 3.3338 3.8152 0.0037 7 6 3.9637 5.0480 -0.0024 8 9 3.2260 6.1798 -0.0039 9 6 5.3492 5.1266 -0.0069 10 6 6.1098 3.9775 -0.0057 11 6 5.4851 2.7284 0.0005 12 6 6.2962 1.4928 0.0013 13 6 7.1166 1.1971 1.0971 14 6 7.8612 0.0570 1.1051 15 6 7.8147 -0.8202 0.0024 16 6 8.5882 -1.9989 0.0031 17 1 8.2427 -2.8718 -0.5308 18 6 9.8039 -2.0377 0.6957 19 7 10.3445 -3.1884 1.0041 20 14 10.6544 -0.4465 1.1796 21 1 10.2876 -0.0936 2.5747 22 1 12.1258 -0.6228 1.0841 23 1 10.2259 0.6419 0.2647 24 6 6.9918 -0.5152 -1.1005 25 6 6.2464 0.6249 -1.0963 26 6 5.3657 0.9520 -2.2746 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 2.2552 3.7606 0.0073 35 1 5.8332 6.0921 -0.0121 36 1 7.1878 4.0428 -0.0095 37 1 7.1556 1.8723 1.9391 38 1 8.4902 -0.1724 1.9526 39 1 11.1869 -3.2153 1.4844 40 1 6.9523 -1.1842 -1.9473 41 1 5.9304 1.5401 -2.9981 42 1 5.0271 0.0278 -2.7428 43 1 4.5026 1.5247 -1.9352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244359521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:06 Heat of formation + Delta-G solvation = -58.943626 kcal Electronic energy + Delta-G solvation = -25739.613457 eV Core-core repulsion = 22049.414834 eV Total energy + Delta-G solvation = -3690.198623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.80958 -40.14760 -38.07275 -37.04261 -34.06178 -33.86436 -31.94379 -31.34846 -30.08484 -28.91366 -26.63992 -26.19315 -24.95289 -22.81139 -22.04826 -21.32653 -20.63088 -20.03993 -18.34372 -17.06740 -16.71194 -16.38647 -16.23953 -15.65791 -15.45847 -15.20025 -14.48158 -14.42261 -14.02325 -13.88054 -13.54366 -13.33564 -13.14620 -12.87078 -12.67631 -12.35813 -12.26079 -12.10961 -12.08690 -11.74360 -11.46503 -11.36731 -11.23299 -11.18176 -10.93588 -10.76594 -10.57681 -10.45773 -10.20247 -9.84209 -9.61527 -9.13975 -8.72004 -8.04244 -7.64634 -7.28204 -7.00807 -4.50086 1.26698 1.46395 2.53150 2.74702 3.09283 3.20764 3.24251 3.30034 3.77664 3.95658 4.34905 4.42312 4.73840 4.78022 4.91108 5.05085 5.08944 5.12871 5.26415 5.29734 5.37007 5.49638 5.54492 5.75824 5.82637 5.88421 5.91994 5.96280 6.09961 6.13835 6.17095 6.25415 6.28677 6.34871 6.51944 6.57844 6.59753 6.82946 6.89372 6.94646 7.17043 7.45046 7.54395 7.68704 7.81515 7.88717 8.10935 8.31876 8.65235 8.76693 10.00963 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.004305 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.112835 B = 6502.291663 C = 7970.448510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.054 3.946 4 O -0.287 6.287 5 C 0.157 3.843 6 C -0.249 4.249 7 C 0.112 3.888 8 F -0.146 7.146 9 C -0.188 4.188 10 C -0.060 4.060 11 C -0.027 4.027 12 C -0.191 4.191 13 C -0.050 4.050 14 C -0.244 4.244 15 C 0.102 3.898 16 C -0.441 4.441 17 H 0.091 0.909 18 C 0.084 3.916 19 N -0.804 5.804 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.243 1.243 24 C -0.212 4.212 25 C -0.017 4.017 26 C -0.110 4.110 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.286 0.714 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 10.728 -1.695 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.021 4.021 4 O -0.199 6.199 5 C 0.111 3.889 6 C -0.268 4.268 7 C 0.093 3.907 8 F -0.125 7.125 9 C -0.207 4.207 10 C -0.078 4.078 11 C -0.027 4.027 12 C -0.192 4.192 13 C -0.068 4.068 14 C -0.263 4.263 15 C 0.099 3.901 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.136 4.136 19 N -0.428 5.428 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.219 1.219 23 H -0.166 1.166 24 C -0.231 4.231 25 C -0.017 4.017 26 C -0.167 4.167 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.501 10.341 -1.612 16.304 hybrid contribution 0.138 0.900 0.396 0.993 sum -12.363 11.241 -1.216 16.753 Atomic orbital electron populations 1.21686 0.94570 1.02395 1.01881 1.21463 0.95560 0.94858 1.04271 1.22879 0.79371 0.98888 1.00957 1.86280 1.20182 1.25870 1.87592 1.18868 0.91612 0.83485 0.94922 1.20991 1.00532 0.91304 1.13998 1.17367 0.89072 0.81238 1.03066 1.91454 1.77323 1.49612 1.94088 1.20909 0.91557 0.99936 1.08272 1.21075 1.00113 0.89906 0.96705 1.18360 0.88969 0.94167 1.01238 1.17586 1.06977 0.96597 0.98063 1.20307 0.94996 0.95896 0.95642 1.20655 1.07015 0.99064 0.99589 1.17750 0.91092 0.91390 0.89873 1.19501 1.02893 0.98131 1.26362 0.89114 1.26224 0.97542 0.98087 0.91721 1.69704 1.17419 1.27377 1.28264 0.86276 0.76629 0.82762 0.80352 1.19596 1.21902 1.16565 1.20524 1.05339 0.98445 0.98812 1.19087 0.95118 0.93893 0.93623 1.20796 0.98633 1.00921 0.96313 0.91779 0.92571 0.92576 0.90561 0.90552 0.92359 0.92349 0.84898 0.85181 0.84501 0.88929 0.88272 0.90357 0.88233 0.92753 0.92727 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.32 6.30 -26.74 -0.17 -1.49 16 3 C 0.05 0.64 4.74 37.15 0.18 0.81 16 4 O -0.29 -4.58 8.04 -19.05 -0.15 -4.73 16 5 C 0.16 2.53 5.27 -38.76 -0.20 2.32 16 6 C -0.25 -3.51 9.01 -39.42 -0.35 -3.86 16 7 C 0.11 1.58 7.30 -39.31 -0.29 1.30 16 8 F -0.15 -2.02 17.26 2.25 0.04 -1.98 16 9 C -0.19 -2.56 10.00 -39.54 -0.40 -2.96 16 10 C -0.06 -0.91 9.73 -39.21 -0.38 -1.29 16 11 C -0.03 -0.46 4.63 -104.73 -0.48 -0.95 16 12 C -0.19 -3.92 4.97 -104.64 -0.52 -4.44 16 13 C -0.05 -1.08 9.66 -39.64 -0.38 -1.47 16 14 C -0.24 -5.83 7.10 -39.29 -0.28 -6.10 16 15 C 0.10 2.56 5.10 -106.79 -0.55 2.01 16 16 C -0.44 -11.77 9.54 -37.89 -0.36 -12.13 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 18 C 0.08 2.17 5.40 -17.33 -0.09 2.07 16 19 N -0.80 -21.13 13.93 55.55 0.77 -20.36 16 20 Si 0.91 20.54 24.51 -169.99 -4.17 16.38 16 21 H -0.27 -5.91 6.70 56.52 0.38 -5.53 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.24 -5.57 6.87 56.52 0.39 -5.18 16 24 C -0.21 -4.90 9.36 -39.29 -0.37 -5.27 16 25 C -0.02 -0.36 5.64 -104.69 -0.59 -0.95 16 26 C -0.11 -1.91 9.42 36.00 0.34 -1.57 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 33 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 34 H 0.13 1.59 6.29 -52.48 -0.33 1.26 16 35 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.10 2.37 4.73 -52.48 -0.25 2.12 16 39 H 0.29 6.79 8.30 -40.82 -0.34 6.46 16 40 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.06 1.01 4.62 -51.93 -0.24 0.77 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -27.50 353.99 -8.56 -36.06 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.85 Total: 4.06 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: -4.53 Total: -34.76 kcal Atomic # 7 Polarization: -21.13 SS G_CDS: 0.77 Total: -20.36 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.15 Total: -4.73 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.17 Total: 16.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.50 -8.56 -36.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244359521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.881 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds