Wall clock time and date at job start Tue Mar 31 2020 11:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 O 1.42903 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.35778 * 116.99992 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.12557 * 0.21910 * 5 4 3 7 7 C 1.38435 * 120.06344 * 180.27172 * 6 5 4 8 8 F 1.35101 * 119.84380 * 179.75886 * 7 6 5 9 9 C 1.38775 * 120.30963 * 359.74367 * 7 6 5 10 10 C 1.37796 * 120.25553 * 0.02562 * 9 7 6 11 11 C 1.39659 * 119.92976 * 359.97438 * 10 9 7 12 12 C 1.47800 * 120.15198 * 179.97438 * 11 10 9 13 13 C 1.40051 * 119.89306 * 64.73423 * 12 11 10 14 14 C 1.36175 * 120.11505 * 179.71324 * 13 12 11 15 15 C 1.40978 * 119.88703 * 0.57506 * 14 13 12 16 16 C 1.40983 * 120.11324 * 179.71915 * 15 14 13 17 17 H 1.07996 * 120.00048 * 150.07938 * 16 15 14 18 18 C 1.39969 * 119.99714 * 330.07775 * 16 15 14 19 19 N 1.30829 * 119.99750 * 161.73486 * 18 16 15 20 20 Si 1.86801 * 120.00188 * 341.73284 * 18 16 15 21 21 H 1.48501 * 109.47080 * 95.41796 * 20 18 16 22 22 H 1.48499 * 109.47045 * 215.41868 * 20 18 16 23 23 H 1.48503 * 109.47087 * 335.41627 * 20 18 16 24 24 C 1.40947 * 119.77818 * 359.69656 * 15 14 13 25 25 C 1.36211 * 119.88416 * 0.02562 * 24 15 14 26 26 C 1.50696 * 119.94256 * 180.02562 * 25 24 15 27 27 H 1.09007 * 109.47745 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47309 * 300.00432 * 1 2 3 29 29 H 1.09006 * 109.47243 * 59.99974 * 1 2 3 30 30 H 1.09000 * 109.46948 * 239.99331 * 2 1 3 31 31 H 1.09002 * 109.46631 * 120.00420 * 2 1 3 32 32 H 1.09003 * 109.46952 * 59.99947 * 3 2 1 33 33 H 1.08994 * 109.47367 * 299.99581 * 3 2 1 34 34 H 1.08004 * 119.97275 * 0.02562 * 6 5 4 35 35 H 1.08009 * 119.87204 * 179.97438 * 9 7 6 36 36 H 1.08002 * 120.03729 * 179.97438 * 10 9 7 37 37 H 1.08001 * 119.94072 * 359.96537 * 13 12 11 38 38 H 1.08008 * 120.05503 * 180.27270 * 14 13 12 39 39 H 0.97002 * 119.99504 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.05739 * 180.02562 * 24 15 14 41 41 H 1.09001 * 109.47162 * 270.02114 * 26 25 24 42 42 H 1.08997 * 109.47099 * 30.01749 * 26 25 24 43 43 H 1.08998 * 109.47451 * 150.01954 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0855 2.6522 0.0001 6 6 3.3338 3.8152 0.0037 7 6 3.9637 5.0480 -0.0024 8 9 3.2260 6.1798 -0.0039 9 6 5.3492 5.1266 -0.0069 10 6 6.1098 3.9775 -0.0057 11 6 5.4851 2.7284 0.0005 12 6 6.2962 1.4928 0.0013 13 6 7.1166 1.1971 1.0971 14 6 7.8612 0.0570 1.1051 15 6 7.8147 -0.8202 0.0024 16 6 8.5882 -1.9989 0.0031 17 1 8.2427 -2.8718 -0.5308 18 6 9.8039 -2.0377 0.6957 19 7 10.3445 -3.1884 1.0041 20 14 10.6544 -0.4465 1.1796 21 1 10.2876 -0.0936 2.5747 22 1 12.1258 -0.6228 1.0841 23 1 10.2259 0.6419 0.2647 24 6 6.9918 -0.5152 -1.1005 25 6 6.2464 0.6249 -1.0963 26 6 5.3657 0.9520 -2.2746 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 2.2552 3.7606 0.0073 35 1 5.8332 6.0921 -0.0121 36 1 7.1878 4.0428 -0.0095 37 1 7.1556 1.8723 1.9391 38 1 8.4902 -0.1724 1.9526 39 1 11.1869 -3.2153 1.4844 40 1 6.9523 -1.1842 -1.9473 41 1 5.9304 1.5401 -2.9981 42 1 5.0271 0.0278 -2.7428 43 1 4.5026 1.5247 -1.9352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244359521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:05 Heat of formation + Delta-G solvation = -70.856483 kcal Electronic energy + Delta-G solvation = -25740.130038 eV Core-core repulsion = 22049.414834 eV Total energy + Delta-G solvation = -3690.715203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.90366 -41.36200 -39.67149 -38.25909 -35.79370 -34.79446 -33.63676 -32.89985 -31.26476 -30.39123 -27.86450 -27.51851 -26.55948 -23.94373 -23.30755 -22.50627 -22.23936 -21.59891 -19.46649 -18.92584 -17.90039 -17.75324 -17.36105 -16.95725 -16.69704 -16.51781 -15.93560 -15.55254 -15.27967 -15.22808 -15.00838 -14.69928 -14.52749 -14.35357 -14.05630 -13.88206 -13.54093 -13.34381 -13.12425 -12.99620 -12.92324 -12.72237 -12.54087 -12.37601 -12.24494 -12.09648 -11.91439 -11.88283 -11.58013 -11.47728 -11.41176 -10.96103 -9.90096 -9.50674 -9.32125 -8.91895 -8.86849 -6.47467 0.05472 0.33801 0.79253 0.94940 1.26994 1.41583 1.49865 2.13042 2.21173 2.51232 2.65909 3.23590 3.48302 3.77277 3.88007 3.95193 3.98673 4.08996 4.21726 4.28225 4.28512 4.32329 4.47840 4.55746 4.62234 4.68652 4.72513 4.79758 4.88667 4.99815 5.01539 5.04442 5.09607 5.14340 5.15091 5.18544 5.22155 5.33670 5.38809 5.44172 5.69238 5.74433 5.90152 5.94011 6.08492 6.26506 6.42115 6.48650 6.75851 6.85623 8.16498 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.004305 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.112835 B = 6502.291663 C = 7970.448510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.049 3.951 4 O -0.314 6.314 5 C 0.156 3.844 6 C -0.244 4.244 7 C 0.117 3.883 8 F -0.141 7.141 9 C -0.181 4.181 10 C -0.054 4.054 11 C -0.063 4.063 12 C -0.163 4.163 13 C -0.061 4.061 14 C -0.254 4.254 15 C 0.082 3.918 16 C -0.482 4.482 17 H 0.055 0.945 18 C 0.049 3.951 19 N -0.848 5.848 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.251 1.251 24 C -0.225 4.225 25 C -0.024 4.024 26 C -0.104 4.104 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.294 0.706 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 14.703 -1.688 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.026 4.026 4 O -0.227 6.227 5 C 0.110 3.890 6 C -0.263 4.263 7 C 0.098 3.902 8 F -0.120 7.120 9 C -0.200 4.200 10 C -0.072 4.072 11 C -0.064 4.064 12 C -0.164 4.164 13 C -0.079 4.079 14 C -0.273 4.273 15 C 0.079 3.921 16 C -0.512 4.512 17 H 0.073 0.927 18 C -0.166 4.166 19 N -0.474 5.474 20 Si 0.789 3.211 21 H -0.184 1.184 22 H -0.204 1.204 23 H -0.175 1.175 24 C -0.245 4.245 25 C -0.024 4.024 26 C -0.161 4.161 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.614 14.317 -1.607 20.521 hybrid contribution 0.468 -0.104 0.325 0.579 sum -14.145 14.213 -1.282 20.093 Atomic orbital electron populations 1.21658 0.92290 1.03105 1.02885 1.21489 0.97463 0.94262 1.02963 1.23154 0.77357 0.99655 1.02428 1.86252 1.22524 1.26298 1.87618 1.18836 0.91169 0.84186 0.94851 1.21146 1.01652 0.90521 1.12985 1.17517 0.89401 0.81351 1.01922 1.91478 1.77253 1.49365 1.93911 1.21128 0.91375 1.00549 1.06945 1.21149 1.00752 0.89471 0.95827 1.18295 0.89569 0.93500 1.05044 1.17997 1.04834 0.97027 0.96590 1.20642 0.94699 0.95563 0.96955 1.20735 1.07729 0.99769 0.99088 1.17878 0.91672 0.91443 0.91061 1.19442 1.04853 0.98155 1.28724 0.92686 1.26852 0.97498 1.00706 0.91511 1.69730 1.18527 1.28823 1.30292 0.85475 0.76329 0.79047 0.80203 1.18410 1.20388 1.17452 1.20698 1.05731 0.99556 0.98493 1.19506 0.94781 0.92930 0.95162 1.20790 0.98426 1.01715 0.95125 0.91310 0.91670 0.91413 0.91656 0.92162 0.91006 0.90520 0.82636 0.82463 0.83632 0.86384 0.88647 0.89542 0.88445 0.91245 0.92007 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -2.46 6.30 30.59 0.19 -2.26 16 3 C 0.05 1.00 4.74 71.98 0.34 1.35 16 4 O -0.31 -9.31 8.04 -91.07 -0.73 -10.05 16 5 C 0.16 4.52 5.27 22.80 0.12 4.64 16 6 C -0.24 -5.85 9.01 22.37 0.20 -5.65 16 7 C 0.12 2.79 7.30 22.45 0.16 2.96 16 8 F -0.14 -3.27 17.26 44.97 0.78 -2.50 16 9 C -0.18 -4.12 10.00 22.29 0.22 -3.90 16 10 C -0.05 -1.44 9.73 22.51 0.22 -1.22 16 11 C -0.06 -2.03 4.63 -19.93 -0.09 -2.12 16 12 C -0.16 -6.44 4.97 -19.88 -0.10 -6.54 16 13 C -0.06 -2.54 9.66 22.23 0.21 -2.33 16 14 C -0.25 -12.25 7.10 22.46 0.16 -12.09 16 15 C 0.08 4.28 5.10 -21.27 -0.11 4.17 16 16 C -0.48 -27.58 9.54 23.36 0.22 -27.36 16 17 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 18 C 0.05 2.67 5.40 85.26 0.46 3.13 16 19 N -0.85 -46.96 13.93 21.83 0.30 -46.66 16 20 Si 0.97 43.22 24.51 68.60 1.68 44.90 16 21 H -0.26 -10.97 6.70 99.48 0.67 -10.30 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.25 -11.40 6.87 99.48 0.68 -10.72 16 24 C -0.23 -10.72 9.36 22.46 0.21 -10.51 16 25 C -0.02 -0.97 5.64 -19.91 -0.11 -1.09 16 26 C -0.10 -3.43 9.42 71.23 0.67 -2.76 16 27 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.29 7.65 -2.39 -0.02 1.27 16 33 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 34 H 0.16 2.97 6.29 -2.91 -0.02 2.95 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.10 4.60 4.73 -2.91 -0.01 4.59 16 39 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 40 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 43 H 0.07 2.21 4.62 -2.39 -0.01 2.20 16 Total: -1.00 -62.06 353.99 6.69 -55.37 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.96 Total: 21.73 kcal Atomic # 6 Polarization: -66.50 SS G_CDS: 3.70 Total: -62.80 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.30 Total: -46.66 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.73 Total: -10.05 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.68 Total: 44.90 kcal Total: -62.06 6.69 -55.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244359521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.485 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds