Wall clock time and date at job start Tue Mar 31 2020 10:30:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52997 * 109.47336 * 2 1
4 4 C 1.53001 * 109.47204 * 239.99897 * 2 1 3
5 5 O 1.45207 * 109.47115 * 120.00000 * 2 1 3
6 6 C 1.34641 * 116.99909 * 59.99855 * 5 2 1
7 7 O 1.21506 * 120.00183 * 359.97438 * 6 5 2
8 8 N 1.34774 * 119.99953 * 180.02562 * 6 5 2
9 9 C 1.47816 * 134.36549 * 179.97438 * 8 6 5
10 10 C 1.52736 * 85.70254 * 156.23821 * 9 8 6
11 11 C 1.47827 * 134.36468 * 359.95127 * 8 6 5
12 12 C 1.52583 * 116.52230 * 264.38605 * 10 9 8
13 13 C 1.53286 * 112.10712 * 233.51938 * 12 10 9
14 14 H 1.09003 * 109.43084 * 90.01247 * 13 12 10
15 15 N 1.46505 * 109.59353 * 210.20682 * 13 12 10
16 16 C 1.36932 * 120.00124 * 206.04726 * 15 13 12
17 17 H 1.08001 * 119.99842 * 0.02562 * 16 15 13
18 18 C 1.38813 * 120.00287 * 180.02562 * 16 15 13
19 19 N 1.31619 * 119.99611 * 0.02562 * 18 16 15
20 20 Si 1.86793 * 120.00111 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47335 * 0.02562 * 20 18 16
22 22 H 1.48509 * 109.47137 * 119.99777 * 20 18 16
23 23 H 1.48495 * 109.47237 * 239.99920 * 20 18 16
24 24 C 1.55253 * 109.01767 * 330.15608 * 13 12 10
25 25 S 1.82610 * 115.07111 * 139.55215 * 10 9 8
26 26 H 1.09001 * 109.47369 * 300.00227 * 1 2 3
27 27 H 1.09004 * 109.47320 * 59.99792 * 1 2 3
28 28 H 1.09003 * 109.47261 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.47174 * 180.02562 * 3 2 1
30 30 H 1.09007 * 109.46951 * 299.99840 * 3 2 1
31 31 H 1.09003 * 109.47262 * 60.00104 * 3 2 1
32 32 H 1.09003 * 109.46824 * 300.00038 * 4 2 1
33 33 H 1.08997 * 109.46931 * 59.99613 * 4 2 1
34 34 H 1.08999 * 109.47314 * 180.02562 * 4 2 1
35 35 H 1.09000 * 113.83883 * 42.04690 * 9 8 6
36 36 H 1.09003 * 113.83844 * 270.43316 * 9 8 6
37 37 H 1.09000 * 113.83389 * 89.56431 * 11 8 6
38 38 H 1.08994 * 113.94851 * 317.97398 * 11 8 6
39 39 H 1.08995 * 108.96524 * 354.21792 * 12 10 9
40 40 H 1.09005 * 108.96386 * 112.83004 * 12 10 9
41 41 H 0.97000 * 119.99490 * 26.05044 * 15 13 12
42 42 H 0.97001 * 119.99628 * 180.02562 * 19 18 16
43 43 H 1.08993 * 111.12012 * 283.04488 * 24 13 12
44 44 H 1.09003 * 111.15334 * 158.91742 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 2.0140 -0.6845 1.1856
6 6 1.6522 -1.9724 1.3384
7 8 0.9508 -2.5095 0.5041
8 7 2.0671 -2.6655 2.4172
9 6 1.8692 -4.0502 2.8949
10 6 3.1685 -3.8459 3.6714
11 6 2.9019 -2.3438 3.5941
12 6 4.4466 -4.3462 3.0047
13 6 5.2414 -5.2887 3.9155
14 1 4.9154 -6.3152 3.7480
15 7 6.6707 -5.1721 3.6157
16 6 7.5117 -6.2222 3.8707
17 1 7.1212 -7.1366 4.2926
18 6 8.8660 -6.1116 3.5871
19 7 9.3419 -4.9971 3.0735
20 14 10.0131 -7.5444 3.9344
21 1 9.2360 -8.6732 4.5065
22 1 10.6588 -7.9794 2.6698
23 1 11.0562 -7.1200 4.9024
24 6 4.9863 -4.8962 5.3958
25 16 3.1791 -4.5432 5.3591
26 1 -0.3634 0.5139 0.8900
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0277 0.0005
29 1 3.1300 1.4424 -0.0005
30 1 1.6767 1.9563 -0.8901
31 1 1.6767 1.9563 0.8900
32 1 1.6766 -1.7490 -1.2492
33 1 1.6766 -0.2075 -2.1392
34 1 3.1300 -0.7217 -1.2490
35 1 1.9396 -4.8018 2.1085
36 1 0.9919 -4.1762 3.5295
37 1 2.3376 -1.9524 4.4405
38 1 3.7860 -1.7508 3.3606
39 1 4.1844 -4.8760 2.0890
40 1 5.0713 -3.4902 2.7493
41 1 7.0212 -4.3510 3.2365
42 1 10.2882 -4.9200 2.8749
43 1 5.5544 -4.0074 5.6700
44 1 5.2107 -5.7253 6.0669
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001254678522.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:30:51
Heat of formation + Delta-G solvation = -29.516381 kcal
Electronic energy + Delta-G solvation = -24547.429437 eV
Core-core repulsion = 21013.870788 eV
Total energy + Delta-G solvation = -3533.558649 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.145 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.96427 -39.57304 -36.77002 -35.93580 -34.15767 -32.71781 -30.41500 -28.64385
-27.59984 -27.53627 -26.62229 -26.48339 -24.05722 -22.38255 -20.87089 -19.90545
-19.07344 -18.03882 -17.49536 -16.82643 -16.59174 -15.82198 -15.35117 -15.04679
-14.77781 -14.53972 -14.29058 -14.05798 -13.68377 -13.43401 -13.27849 -13.07604
-12.68426 -12.51579 -12.34037 -12.08535 -12.05387 -12.03702 -11.72849 -11.61376
-11.52795 -11.25151 -11.09712 -10.94224 -10.84002 -10.49129 -10.41779 -10.16203
-10.13940 -9.97010 -9.68260 -9.06349 -8.91101 -7.59054 -7.14764 -5.91950
-3.23022 1.61217 2.23547 2.57020 2.84850 3.35629 3.42036 3.43829
3.61806 4.07704 4.39321 4.53838 4.57965 4.59202 4.72389 4.82011
5.05161 5.26615 5.27226 5.28338 5.35479 5.36190 5.41736 5.48892
5.49445 5.57746 5.61961 5.67635 5.68526 5.72245 5.75259 5.81262
5.95489 6.06560 6.10585 6.17218 6.17618 6.39854 6.47498 6.68205
7.54690 7.58112 8.24739 8.26149 9.37181 9.88501 10.23615 11.29865
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.017018 B = 0.003180 C = 0.002839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.955003 B = 8804.237668 C = 9858.809312
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.135 3.865
3 C -0.140 4.140
4 C -0.184 4.184
5 O -0.360 6.360
6 C 0.677 3.323
7 O -0.570 6.570
8 N -0.629 5.629
9 C 0.162 3.838
10 C -0.046 4.046
11 C 0.130 3.870
12 C -0.111 4.111
13 C 0.178 3.822
14 H 0.068 0.932
15 N -0.712 5.712
16 C -0.250 4.250
17 H 0.074 0.926
18 C -0.007 4.007
19 N -0.928 5.928
20 Si 0.909 3.091
21 H -0.279 1.279
22 H -0.290 1.290
23 H -0.290 1.290
24 C -0.073 4.073
25 S -0.294 6.294
26 H 0.058 0.942
27 H 0.069 0.931
28 H 0.087 0.913
29 H 0.068 0.932
30 H 0.079 0.921
31 H 0.066 0.934
32 H 0.087 0.913
33 H 0.069 0.931
34 H 0.061 0.939
35 H 0.096 0.904
36 H 0.095 0.905
37 H 0.097 0.903
38 H 0.093 0.907
39 H 0.080 0.920
40 H 0.079 0.921
41 H 0.386 0.614
42 H 0.257 0.743
43 H 0.088 0.912
44 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.591 10.262 -2.700 19.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C 0.098 3.902
3 C -0.198 4.198
4 C -0.241 4.241
5 O -0.275 6.275
6 C 0.432 3.568
7 O -0.460 6.460
8 N -0.373 5.373
9 C 0.039 3.961
10 C -0.158 4.158
11 C 0.006 3.994
12 C -0.151 4.151
13 C 0.065 3.935
14 H 0.086 0.914
15 N -0.352 5.352
16 C -0.381 4.381
17 H 0.092 0.908
18 C -0.204 4.204
19 N -0.575 5.575
20 Si 0.740 3.260
21 H -0.204 1.204
22 H -0.217 1.217
23 H -0.217 1.217
24 C -0.225 4.225
25 S -0.065 6.065
26 H 0.077 0.923
27 H 0.088 0.912
28 H 0.106 0.894
29 H 0.087 0.913
30 H 0.098 0.902
31 H 0.085 0.915
32 H 0.106 0.894
33 H 0.088 0.912
34 H 0.080 0.920
35 H 0.114 0.886
36 H 0.113 0.887
37 H 0.115 0.885
38 H 0.111 0.889
39 H 0.099 0.901
40 H 0.097 0.903
41 H 0.220 0.780
42 H 0.067 0.933
43 H 0.107 0.893
44 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -17.630 9.917 -2.319 20.360
hybrid contribution 1.693 -0.173 -0.710 1.844
sum -15.937 9.744 -3.029 18.924
Atomic orbital electron populations
1.22510 0.94136 1.04983 1.02329 1.22072 0.94242 0.91564 0.82280
1.21856 1.02464 0.92474 1.02963 1.22524 1.01837 1.03459 0.96315
1.86327 1.71652 1.23355 1.46182 1.17464 0.77890 0.80167 0.81229
1.90887 1.41492 1.70497 1.43115 1.48779 1.53843 1.14161 1.20503
1.23122 0.95927 0.81636 0.95379 1.24239 0.98715 0.97624 0.95206
1.23490 0.94451 0.94935 0.86563 1.21917 0.92558 1.00949 0.99651
1.21174 0.86418 0.97516 0.88377 0.91433 1.42507 1.00699 1.17178
1.74826 1.19291 0.88969 0.93965 1.35876 0.90778 1.24787 0.97051
0.97432 1.01137 1.69670 1.13580 1.25553 1.48720 0.86099 0.80930
0.81516 0.77503 1.20374 1.21716 1.21707 1.25629 0.87966 1.04656
1.04211 1.87444 1.17877 1.81770 1.19453 0.92282 0.91197 0.89440
0.91315 0.90194 0.91533 0.89381 0.91226 0.91963 0.88593 0.88675
0.88471 0.88858 0.90101 0.90279 0.77963 0.93308 0.89293 0.88224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.85 8.37 37.15 0.31 -1.54 16
2 C 0.14 1.48 1.13 -90.62 -0.10 1.37 16
3 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16
4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16
5 O -0.36 -4.86 9.87 -40.33 -0.40 -5.26 16
6 C 0.68 9.96 8.22 54.05 0.44 10.41 16
7 O -0.57 -9.32 12.61 -19.28 -0.24 -9.56 16
8 N -0.63 -8.37 3.61 -190.96 -0.69 -9.06 16
9 C 0.16 1.96 8.14 -3.46 -0.03 1.93 16
10 C -0.05 -0.60 1.37 -91.29 -0.13 -0.73 16
11 C 0.13 1.56 8.20 -3.44 -0.03 1.53 16
12 C -0.11 -1.71 5.68 -26.80 -0.15 -1.86 16
13 C 0.18 3.22 3.17 -66.59 -0.21 3.01 16
14 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16
15 N -0.71 -16.44 5.14 -52.12 -0.27 -16.70 16
16 C -0.25 -6.51 9.94 -15.06 -0.15 -6.66 16
17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16
19 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16
20 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16
21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
24 C -0.07 -1.20 7.16 38.35 0.27 -0.93 16
25 S -0.29 -4.13 22.59 -107.50 -2.43 -6.56 16
26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16
29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16
33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.10 1.16 7.86 -51.93 -0.41 0.75 16
36 H 0.10 1.04 8.13 -51.93 -0.42 0.61 16
37 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16
38 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16
39 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16
40 H 0.08 1.27 7.26 -51.93 -0.38 0.90 16
41 H 0.39 9.52 7.51 -40.82 -0.31 9.21 16
42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
43 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16
44 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16
LS Contribution 365.56 15.07 5.51 5.51
Total: -1.00 -29.53 365.56 -9.17 -38.70
By element:
Atomic # 1 Polarization: 15.91 SS G_CDS: -7.12 Total: 8.79 kcal
Atomic # 6 Polarization: 2.95 SS G_CDS: 0.78 Total: 3.72 kcal
Atomic # 7 Polarization: -51.57 SS G_CDS: -0.23 Total: -51.80 kcal
Atomic # 8 Polarization: -14.18 SS G_CDS: -0.64 Total: -14.82 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal
Atomic # 16 Polarization: -4.13 SS G_CDS: -2.43 Total: -6.56 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -29.53 -9.17 -38.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254678522.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.180 kcal
(2) G-P(sol) polarization free energy of solvation -29.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.516 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds