Wall clock time and date at job start Tue Mar 31 2020 10:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 C 1.53001 * 109.47204 * 239.99897 * 2 1 3 5 5 O 1.45207 * 109.47115 * 120.00000 * 2 1 3 6 6 C 1.34641 * 116.99909 * 59.99855 * 5 2 1 7 7 O 1.21506 * 120.00183 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99953 * 180.02562 * 6 5 2 9 9 C 1.47816 * 134.36549 * 179.97438 * 8 6 5 10 10 C 1.52736 * 85.70254 * 156.23821 * 9 8 6 11 11 C 1.47827 * 134.36468 * 359.95127 * 8 6 5 12 12 C 1.52583 * 116.52230 * 264.38605 * 10 9 8 13 13 C 1.53286 * 112.10712 * 233.51938 * 12 10 9 14 14 H 1.09003 * 109.43084 * 90.01247 * 13 12 10 15 15 N 1.46505 * 109.59353 * 210.20682 * 13 12 10 16 16 C 1.36932 * 120.00124 * 206.04726 * 15 13 12 17 17 H 1.08001 * 119.99842 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00287 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99611 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47335 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47137 * 119.99777 * 20 18 16 23 23 H 1.48495 * 109.47237 * 239.99920 * 20 18 16 24 24 C 1.55253 * 109.01767 * 330.15608 * 13 12 10 25 25 S 1.82610 * 115.07111 * 139.55215 * 10 9 8 26 26 H 1.09001 * 109.47369 * 300.00227 * 1 2 3 27 27 H 1.09004 * 109.47320 * 59.99792 * 1 2 3 28 28 H 1.09003 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47174 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46951 * 299.99840 * 3 2 1 31 31 H 1.09003 * 109.47262 * 60.00104 * 3 2 1 32 32 H 1.09003 * 109.46824 * 300.00038 * 4 2 1 33 33 H 1.08997 * 109.46931 * 59.99613 * 4 2 1 34 34 H 1.08999 * 109.47314 * 180.02562 * 4 2 1 35 35 H 1.09000 * 113.83883 * 42.04690 * 9 8 6 36 36 H 1.09003 * 113.83844 * 270.43316 * 9 8 6 37 37 H 1.09000 * 113.83389 * 89.56431 * 11 8 6 38 38 H 1.08994 * 113.94851 * 317.97398 * 11 8 6 39 39 H 1.08995 * 108.96524 * 354.21792 * 12 10 9 40 40 H 1.09005 * 108.96386 * 112.83004 * 12 10 9 41 41 H 0.97000 * 119.99490 * 26.05044 * 15 13 12 42 42 H 0.97001 * 119.99628 * 180.02562 * 19 18 16 43 43 H 1.08993 * 111.12012 * 283.04488 * 24 13 12 44 44 H 1.09003 * 111.15334 * 158.91742 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9508 -2.5095 0.5041 8 7 2.0671 -2.6655 2.4172 9 6 1.8692 -4.0502 2.8949 10 6 3.1685 -3.8459 3.6714 11 6 2.9019 -2.3438 3.5941 12 6 4.4466 -4.3462 3.0047 13 6 5.2414 -5.2887 3.9155 14 1 4.9154 -6.3152 3.7480 15 7 6.6707 -5.1721 3.6157 16 6 7.5117 -6.2222 3.8707 17 1 7.1212 -7.1366 4.2926 18 6 8.8660 -6.1116 3.5871 19 7 9.3419 -4.9971 3.0735 20 14 10.0131 -7.5444 3.9344 21 1 9.2360 -8.6732 4.5065 22 1 10.6588 -7.9794 2.6698 23 1 11.0562 -7.1200 4.9024 24 6 4.9863 -4.8962 5.3958 25 16 3.1791 -4.5432 5.3591 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.9396 -4.8018 2.1085 36 1 0.9919 -4.1762 3.5295 37 1 2.3376 -1.9524 4.4405 38 1 3.7860 -1.7508 3.3606 39 1 4.1844 -4.8760 2.0890 40 1 5.0713 -3.4902 2.7493 41 1 7.0212 -4.3510 3.2365 42 1 10.2882 -4.9200 2.8749 43 1 5.5544 -4.0074 5.6700 44 1 5.2107 -5.7253 6.0669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254678522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:51 Heat of formation + Delta-G solvation = -29.516381 kcal Electronic energy + Delta-G solvation = -24547.429437 eV Core-core repulsion = 21013.870788 eV Total energy + Delta-G solvation = -3533.558649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96427 -39.57304 -36.77002 -35.93580 -34.15767 -32.71781 -30.41500 -28.64385 -27.59984 -27.53627 -26.62229 -26.48339 -24.05722 -22.38255 -20.87089 -19.90545 -19.07344 -18.03882 -17.49536 -16.82643 -16.59174 -15.82198 -15.35117 -15.04679 -14.77781 -14.53972 -14.29058 -14.05798 -13.68377 -13.43401 -13.27849 -13.07604 -12.68426 -12.51579 -12.34037 -12.08535 -12.05387 -12.03702 -11.72849 -11.61376 -11.52795 -11.25151 -11.09712 -10.94224 -10.84002 -10.49129 -10.41779 -10.16203 -10.13940 -9.97010 -9.68260 -9.06349 -8.91101 -7.59054 -7.14764 -5.91950 -3.23022 1.61217 2.23547 2.57020 2.84850 3.35629 3.42036 3.43829 3.61806 4.07704 4.39321 4.53838 4.57965 4.59202 4.72389 4.82011 5.05161 5.26615 5.27226 5.28338 5.35479 5.36190 5.41736 5.48892 5.49445 5.57746 5.61961 5.67635 5.68526 5.72245 5.75259 5.81262 5.95489 6.06560 6.10585 6.17218 6.17618 6.39854 6.47498 6.68205 7.54690 7.58112 8.24739 8.26149 9.37181 9.88501 10.23615 11.29865 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.003180 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.955003 B = 8804.237668 C = 9858.809312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.677 3.323 7 O -0.570 6.570 8 N -0.629 5.629 9 C 0.162 3.838 10 C -0.046 4.046 11 C 0.130 3.870 12 C -0.111 4.111 13 C 0.178 3.822 14 H 0.068 0.932 15 N -0.712 5.712 16 C -0.250 4.250 17 H 0.074 0.926 18 C -0.007 4.007 19 N -0.928 5.928 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C -0.073 4.073 25 S -0.294 6.294 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.088 0.912 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.591 10.262 -2.700 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.432 3.568 7 O -0.460 6.460 8 N -0.373 5.373 9 C 0.039 3.961 10 C -0.158 4.158 11 C 0.006 3.994 12 C -0.151 4.151 13 C 0.065 3.935 14 H 0.086 0.914 15 N -0.352 5.352 16 C -0.381 4.381 17 H 0.092 0.908 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.740 3.260 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.225 4.225 25 S -0.065 6.065 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.630 9.917 -2.319 20.360 hybrid contribution 1.693 -0.173 -0.710 1.844 sum -15.937 9.744 -3.029 18.924 Atomic orbital electron populations 1.22510 0.94136 1.04983 1.02329 1.22072 0.94242 0.91564 0.82280 1.21856 1.02464 0.92474 1.02963 1.22524 1.01837 1.03459 0.96315 1.86327 1.71652 1.23355 1.46182 1.17464 0.77890 0.80167 0.81229 1.90887 1.41492 1.70497 1.43115 1.48779 1.53843 1.14161 1.20503 1.23122 0.95927 0.81636 0.95379 1.24239 0.98715 0.97624 0.95206 1.23490 0.94451 0.94935 0.86563 1.21917 0.92558 1.00949 0.99651 1.21174 0.86418 0.97516 0.88377 0.91433 1.42507 1.00699 1.17178 1.74826 1.19291 0.88969 0.93965 1.35876 0.90778 1.24787 0.97051 0.97432 1.01137 1.69670 1.13580 1.25553 1.48720 0.86099 0.80930 0.81516 0.77503 1.20374 1.21716 1.21707 1.25629 0.87966 1.04656 1.04211 1.87444 1.17877 1.81770 1.19453 0.92282 0.91197 0.89440 0.91315 0.90194 0.91533 0.89381 0.91226 0.91963 0.88593 0.88675 0.88471 0.88858 0.90101 0.90279 0.77963 0.93308 0.89293 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 8.37 37.15 0.31 -1.54 16 2 C 0.14 1.48 1.13 -90.62 -0.10 1.37 16 3 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 5 O -0.36 -4.86 9.87 -40.33 -0.40 -5.26 16 6 C 0.68 9.96 8.22 54.05 0.44 10.41 16 7 O -0.57 -9.32 12.61 -19.28 -0.24 -9.56 16 8 N -0.63 -8.37 3.61 -190.96 -0.69 -9.06 16 9 C 0.16 1.96 8.14 -3.46 -0.03 1.93 16 10 C -0.05 -0.60 1.37 -91.29 -0.13 -0.73 16 11 C 0.13 1.56 8.20 -3.44 -0.03 1.53 16 12 C -0.11 -1.71 5.68 -26.80 -0.15 -1.86 16 13 C 0.18 3.22 3.17 -66.59 -0.21 3.01 16 14 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 15 N -0.71 -16.44 5.14 -52.12 -0.27 -16.70 16 16 C -0.25 -6.51 9.94 -15.06 -0.15 -6.66 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 20 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.07 -1.20 7.16 38.35 0.27 -0.93 16 25 S -0.29 -4.13 22.59 -107.50 -2.43 -6.56 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.16 7.86 -51.93 -0.41 0.75 16 36 H 0.10 1.04 8.13 -51.93 -0.42 0.61 16 37 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16 38 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16 39 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 40 H 0.08 1.27 7.26 -51.93 -0.38 0.90 16 41 H 0.39 9.52 7.51 -40.82 -0.31 9.21 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -29.53 365.56 -9.17 -38.70 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.12 Total: 8.79 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 0.78 Total: 3.72 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.23 Total: -51.80 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.64 Total: -14.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -2.43 Total: -6.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.53 -9.17 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254678522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.180 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds