Wall clock time and date at job start Tue Mar 31 2020 10:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 C 1.53001 * 109.47204 * 239.99897 * 2 1 3 5 5 O 1.45207 * 109.47115 * 120.00000 * 2 1 3 6 6 C 1.34641 * 116.99909 * 59.99855 * 5 2 1 7 7 O 1.21506 * 120.00183 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99953 * 180.02562 * 6 5 2 9 9 C 1.47816 * 134.36549 * 179.97438 * 8 6 5 10 10 C 1.52736 * 85.70254 * 156.23821 * 9 8 6 11 11 C 1.47827 * 134.36468 * 359.95127 * 8 6 5 12 12 C 1.52583 * 116.52230 * 264.38605 * 10 9 8 13 13 C 1.53286 * 112.10712 * 233.51938 * 12 10 9 14 14 H 1.09003 * 109.43084 * 90.01247 * 13 12 10 15 15 N 1.46505 * 109.59353 * 210.20682 * 13 12 10 16 16 C 1.36932 * 120.00124 * 206.04726 * 15 13 12 17 17 H 1.08001 * 119.99842 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00287 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99611 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47335 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47137 * 119.99777 * 20 18 16 23 23 H 1.48495 * 109.47237 * 239.99920 * 20 18 16 24 24 C 1.55253 * 109.01767 * 330.15608 * 13 12 10 25 25 S 1.82610 * 115.07111 * 139.55215 * 10 9 8 26 26 H 1.09001 * 109.47369 * 300.00227 * 1 2 3 27 27 H 1.09004 * 109.47320 * 59.99792 * 1 2 3 28 28 H 1.09003 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47174 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46951 * 299.99840 * 3 2 1 31 31 H 1.09003 * 109.47262 * 60.00104 * 3 2 1 32 32 H 1.09003 * 109.46824 * 300.00038 * 4 2 1 33 33 H 1.08997 * 109.46931 * 59.99613 * 4 2 1 34 34 H 1.08999 * 109.47314 * 180.02562 * 4 2 1 35 35 H 1.09000 * 113.83883 * 42.04690 * 9 8 6 36 36 H 1.09003 * 113.83844 * 270.43316 * 9 8 6 37 37 H 1.09000 * 113.83389 * 89.56431 * 11 8 6 38 38 H 1.08994 * 113.94851 * 317.97398 * 11 8 6 39 39 H 1.08995 * 108.96524 * 354.21792 * 12 10 9 40 40 H 1.09005 * 108.96386 * 112.83004 * 12 10 9 41 41 H 0.97000 * 119.99490 * 26.05044 * 15 13 12 42 42 H 0.97001 * 119.99628 * 180.02562 * 19 18 16 43 43 H 1.08993 * 111.12012 * 283.04488 * 24 13 12 44 44 H 1.09003 * 111.15334 * 158.91742 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9508 -2.5095 0.5041 8 7 2.0671 -2.6655 2.4172 9 6 1.8692 -4.0502 2.8949 10 6 3.1685 -3.8459 3.6714 11 6 2.9019 -2.3438 3.5941 12 6 4.4466 -4.3462 3.0047 13 6 5.2414 -5.2887 3.9155 14 1 4.9154 -6.3152 3.7480 15 7 6.6707 -5.1721 3.6157 16 6 7.5117 -6.2222 3.8707 17 1 7.1212 -7.1366 4.2926 18 6 8.8660 -6.1116 3.5871 19 7 9.3419 -4.9971 3.0735 20 14 10.0131 -7.5444 3.9344 21 1 9.2360 -8.6732 4.5065 22 1 10.6588 -7.9794 2.6698 23 1 11.0562 -7.1200 4.9024 24 6 4.9863 -4.8962 5.3958 25 16 3.1791 -4.5432 5.3591 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.9396 -4.8018 2.1085 36 1 0.9919 -4.1762 3.5295 37 1 2.3376 -1.9524 4.4405 38 1 3.7860 -1.7508 3.3606 39 1 4.1844 -4.8760 2.0890 40 1 5.0713 -3.4902 2.7493 41 1 7.0212 -4.3510 3.2365 42 1 10.2882 -4.9200 2.8749 43 1 5.5544 -4.0074 5.6700 44 1 5.2107 -5.7253 6.0669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254678522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:50 Heat of formation + Delta-G solvation = -46.762015 kcal Electronic energy + Delta-G solvation = -24548.177264 eV Core-core repulsion = 21013.870788 eV Total energy + Delta-G solvation = -3534.306476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00796 -40.61485 -37.95882 -37.37690 -35.09302 -34.48547 -31.91088 -30.15254 -28.36907 -28.30675 -27.78033 -27.58688 -25.92385 -23.51583 -22.17188 -21.08697 -20.14457 -19.41295 -18.98291 -17.87403 -17.69534 -17.05659 -16.67727 -16.31057 -16.00535 -15.81093 -15.37625 -15.32864 -14.99781 -14.83331 -14.43380 -14.29647 -13.86243 -13.46190 -13.34985 -13.12369 -12.98207 -12.94544 -12.89976 -12.87059 -12.74269 -12.58760 -12.49356 -12.35247 -12.16340 -12.04064 -11.81617 -11.75736 -11.40587 -11.26868 -11.07481 -10.82956 -9.96240 -9.12541 -8.69758 -7.97733 -5.27765 0.52808 1.14502 1.30082 1.48622 1.49726 1.58800 1.74832 2.54037 2.65059 3.00649 3.28365 3.41013 3.67464 3.75250 3.79640 3.93801 3.94179 4.12377 4.16289 4.22580 4.34144 4.37906 4.42814 4.52313 4.59952 4.60882 4.61477 4.75930 4.79216 4.80254 4.83183 4.87177 4.88503 5.11416 5.11849 5.22175 5.27523 5.32259 5.45399 5.51299 6.23026 6.48489 7.18317 7.30881 8.00094 8.24580 9.25158 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.003180 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.955003 B = 8804.237668 C = 9858.809312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.671 3.329 7 O -0.592 6.592 8 N -0.633 5.633 9 C 0.164 3.836 10 C -0.043 4.043 11 C 0.136 3.864 12 C -0.102 4.102 13 C 0.176 3.824 14 H 0.062 0.938 15 N -0.725 5.725 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.296 1.296 23 H -0.294 1.294 24 C -0.074 4.074 25 S -0.258 6.258 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.081 0.919 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.182 10.855 -2.236 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.427 3.573 7 O -0.484 6.484 8 N -0.377 5.377 9 C 0.042 3.958 10 C -0.154 4.154 11 C 0.012 3.988 12 C -0.141 4.141 13 C 0.065 3.935 14 H 0.080 0.920 15 N -0.365 5.365 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.223 1.223 23 H -0.221 1.221 24 C -0.226 4.226 25 S -0.029 6.029 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.274 10.497 -1.821 22.022 hybrid contribution 2.050 -0.336 -0.873 2.253 sum -17.224 10.161 -2.694 20.179 Atomic orbital electron populations 1.22449 0.93526 1.03632 1.03750 1.22469 0.94919 0.92678 0.81336 1.21885 1.02236 0.90623 1.04478 1.22485 1.01381 1.02235 0.97690 1.86336 1.71762 1.22752 1.47406 1.17639 0.77830 0.80577 0.81259 1.90879 1.42519 1.71053 1.43901 1.48870 1.53740 1.14551 1.20518 1.23221 0.95862 0.81326 0.95417 1.24156 0.98008 0.98657 0.94605 1.23580 0.94625 0.93913 0.86695 1.21736 0.93249 0.99989 0.99158 1.21342 0.84206 0.98043 0.89916 0.91955 1.42634 1.02514 1.16116 1.75199 1.19640 0.89413 0.94563 1.33829 0.90242 1.25522 0.98692 0.99708 1.02263 1.69810 1.13360 1.27466 1.50947 0.85134 0.78954 0.79243 0.76785 1.18904 1.22331 1.22132 1.25256 0.90606 1.04308 1.02391 1.87341 1.14423 1.81684 1.19460 0.91793 0.88829 0.92071 0.91694 0.87675 0.91009 0.92100 0.88744 0.92568 0.88576 0.86730 0.86418 0.88785 0.90247 0.91182 0.79214 0.93967 0.90007 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 2 C 0.12 2.51 1.13 -10.80 -0.01 2.50 16 3 C -0.14 -1.91 8.85 71.98 0.64 -1.28 16 4 C -0.18 -3.83 8.37 71.98 0.60 -3.23 16 5 O -0.37 -9.62 9.87 -55.50 -0.55 -10.17 16 6 C 0.67 19.37 8.22 129.79 1.07 20.44 16 7 O -0.59 -19.38 12.61 19.82 0.25 -19.13 16 8 N -0.63 -16.01 3.61 -988.48 -3.57 -19.58 16 9 C 0.16 3.67 8.14 86.04 0.70 4.37 16 10 C -0.04 -1.04 1.37 -11.04 -0.02 -1.05 16 11 C 0.14 2.98 8.20 86.04 0.71 3.69 16 12 C -0.10 -3.07 5.68 30.55 0.17 -2.90 16 13 C 0.18 6.30 3.17 45.86 0.15 6.45 16 14 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 15 N -0.72 -33.84 5.14 -318.82 -1.64 -35.48 16 16 C -0.24 -12.67 9.94 84.03 0.84 -11.83 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 19 N -0.97 -56.87 13.06 21.65 0.28 -56.59 16 20 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 C -0.07 -2.37 7.16 72.76 0.52 -1.85 16 25 S -0.26 -6.66 22.59 -56.49 -1.28 -7.94 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.10 2.19 7.86 -2.39 -0.02 2.17 16 36 H 0.11 2.17 8.13 -2.39 -0.02 2.15 16 37 H 0.12 2.16 8.13 -2.39 -0.02 2.14 16 38 H 0.09 2.09 7.86 -2.39 -0.02 2.07 16 39 H 0.08 2.41 7.70 -2.39 -0.02 2.39 16 40 H 0.07 2.26 7.26 -2.38 -0.02 2.24 16 41 H 0.38 18.95 7.51 -92.71 -0.70 18.26 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -63.80 365.56 2.25 -61.55 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.30 Total: 31.54 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.43 Total: 9.26 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.93 Total: -111.65 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.30 Total: -29.31 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.28 Total: -7.94 kcal Total: -63.80 2.25 -61.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254678522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.790 kcal (2) G-P(sol) polarization free energy of solvation -63.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds